Cebus imitator (Panamanian white-faced capuchin): 108311791
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Entry
108311791 CDS
T08783
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108311791 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cimi03041
]
108311791 (DHX38)
Enzymes [BR:
cimi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108311791 (DHX38)
Spliceosome [BR:
cimi03041
]
Complex C
Other components
Step II factors
108311791 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
Flavi_DEAD
AAA_30
Microtub_bd
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
108311791
NCBI-ProteinID:
XP_017394845
Ensembl:
ENSCCAG00000031157
UniProt:
A0A2K5RF64
LinkDB
All DBs
Position
Unknown
AA seq
1227 aa
AA seq
DB search
MGDTSEDASIHRLEGTDLDSQVGGLICKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSKISSYKDWEESKDDQKDAEEEGGAQAGRNIRKDRHYRSARVETPSH
PGGVSEEFWERSRQRERERREHGVYASSKEEKDWKKEKSRDRDYDRKRDRDERDRSRHSS
RSERDGGSERSSRRNEPESPRHRPKDAATPSRSTWEEEDGGYGSSRRSQWESPSPTPSYR
DSERSHRPSTRDRDRSVRGKYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREEG
EEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQ
KRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGR
IVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMG
VKKEEEPDKPVTEDGKVDYRTEQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQE
LLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEE
MGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLN
TDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQ
EDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYS
QLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDAL
QIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKS
LGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLI
VSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKN
NNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQ
AAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEW
LAELGPMFYSVKQAGKSRQENRRRAKEEATAMEEEMALAEEQLRARRQEQEKRSPLGSVR
STKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgggggacaccagtgaggatgcctctatccatcgattggaaggcactgatctggactct
caggttggcggtctaatttgcaagaccaaaagtgcggccagcgagcagcatgtcttcaag
gcccctgctcctcgcccttcgttactgggactggacttgctggcttccctgaaacggagg
gagcgagaggagaaggacgatggggaggacaagaagaagtccaaaatctcttcctacaag
gactgggaagagagcaaggatgaccagaaggatgctgaggaagagggtggtgcccaggct
ggccgaaatatccggaaagacagacattatcgatctgctcgggtagagactccatcccat
cctggtggtgtgagcgaagagttttgggaacgcagtcggcagagagagcgggagcggcgg
gaacatggtgtctatgcctcgtccaaagaggaaaaggattggaagaaggagaaatcgcgg
gatcgagactatgaccgcaagagggacagagatgagcgggatagaagtaggcacagtagc
agatcggagcgagatggagggtcagaacgtagcagcagaagaaatgaacctgagagccca
cgacatcgacctaaagatgcagccaccccttcaaggtctacctgggaggaagaggacggt
ggctatggctcctcaaggcgctcgcagtgggaatcgccctcgccaacaccttcctatcgg
gattctgagcggagccatcggccgtccactcgggatcgagacaggtctgtgaggggcaag
tactcggatgacacacctctgccaactccttcctacaaatacaacgagtgggctgatgac
agaagacacttggggtccaccccgcgtctgtccaggggccgaggaagacgtgaggagggc
gaagaaggcatttcgtttgacacggaggaggagcggcagcagtgggaggatgaccagagg
caagccgatcgggattggtacatgatggacgaggggtatgatgagttccacaacccgttg
gcctattcctccgaggactacgtgaggagacgggagcagcacctgcataaacagaagcag
aagcgcatttcggctcagcggagacagatcaacgaggataacgagcgctgggagacgaac
cgcatgctcaccagcggggtggtccatcggctggaggtggacgaggactttgaagaggac
aatgcggccaaggtgcacctaatggtgcacaatctggtgcctccctttctggatgggcgc
attgtcttcaccaagcagccggagccagtgattccagtgaaggatgccacttctgacctg
gccatcattgctcggaaaggcagccaaacagtgcggaagcacagggagcagaaggagcgc
aagaaggcccagcacaaacactgggaactggctgggaccaaactgggagatataatgggc
gtcaagaaggaggaagagccagataaacctgtgacggaggacgggaaggtagactacagg
acagagcagaagtttgcagatcacatgaagaaaaagagcgaagccagcagtgaatttgca
aagaagaagtccatcctggagcaaaggcagtacttgcccatcttcgcagtgcagcaggaa
ctgctcactattattagagacaacagcatcgtgatcgtggttggggagacgggaagtggt
aagaccactcagctgacgcagtatctgcatgaagatggttacacggactatgggatgatt
gggtgcacccagccacggcgcgtagctgccatgtcagtggccaagagagtcagtgaagag
atggggggaaaccttggcgaggaggtgggctacgccatccgcttcgaagactgcacttca
gagaacaccttgatcaaatacatgactgatgggatcctgctccgagagtccctccgggaa
gctgacctggatcactacagcgccatcatcatggatgaggcccacgagcgctccctcaac
accgacgtgctctttgggctgctccgggaggtagtggctcggcgctcagacctgaagctc
atcgtcacatcagccacgatggatgcggagaagtttgctgccttttttgggaatgtcccc
atcttccacatccctggccgtaccttccctgttgacatcctcttcagcaagaccccgcag
gaggattacgtggaggctgcggtgaagcaatcgttgcaggtgcacctgtcaggggcccct
ggggacatccttatcttcatgcctggccaagaggacattgaggtgacctcagaccagatt
gtggagcatctggaggaactggagaatgcgcctgccctggctgtgttgcctatctactcc
cagctgccttctgacctccaggccaaaatctttcagaaggctccggatggcgttcggaag
tgcattgttgccaccaacattgccgagacgtccctgacagttgatggcatcatgtttgtt
atcgattctggttattgcaaattaaaggtcttcaaccccaggatcggcatggacgctctg
cagatctatcccattagccaggccaatgccaaccagcggtcagggcgggccggcaggacg
ggcccaggtcagtgtttcaggctctacacccagagcgcctataagaacgagctcctgacc
accacggtgcccgagatccagaggaccaacctggccaatgtggtgctgctgctcaagtcc
ctcggggtgcaggacctgctgcagttccacttcatggacccgcccccggaggacaacatg
ctcaactccatgtatcagctctggatccttggggccctggacaacacaggtggtctgacc
tctaccgggcggctgatggtggagttcccgctggaccctgccctgtccaagatgctcatc
gtgtcctgtgacatgggctgtagctctgagatcctactcatcgtctccatgctctcggtc
ccggccatcttctacaggcccaagggcagagaagaggagagcgatcaaatccgggagaag
tttgctgtccctgagagtgatcacttgacctacctgaatgtctacctgcagtggaagaac
aataattactccaccatttggtgtaacgatcatttcatccatgctaaggccatgcggaag
gtccgggaggtgcgagctcaactcaaggacatcatggtgcagcagcggatgagcctggcc
tcatgtggcactgactgggacatcgtcaggaagtgcatctgtgctgcctacttccaccaa
gcagccaagctcaagggaattggggagtacgtgaacatccgcacagggatgccctgccac
ttgcaccccaccagctccctttttggaatgggctacaccccagattacatagtgtatcat
gagttggtcatgaccaccaaggagtatatgcaatgtgtgactgccgtggacggggagtgg
ctggcggagctgggccccatgttctatagcgtgaaacaggcaggcaagtcacggcaggag
aaccgtcgccgggccaaagaggaagccactgccatggaggaggagatggcgctggccgag
gagcagctgcgagcccggcggcaggagcaggagaagcgcagccccctgggcagtgtcagg
tctacgaagatctacactccaggccggaaagagcaaggagagcccatgacccctcgccgc
acaccagcccgctttggtctgtga
DBGET
integrated database retrieval system
