Cebus imitator (Panamanian white-faced capuchin): 108313131
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Entry
108313131 CDS
T08783
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi03008
Ribosome biogenesis in eukaryotes
cimi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108313131 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
108313131 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cimi03021
]
108313131 (XRN2)
03019 Messenger RNA biogenesis [BR:
cimi03019
]
108313131 (XRN2)
03009 Ribosome biogenesis [BR:
cimi03009
]
108313131 (XRN2)
03016 Transfer RNA biogenesis [BR:
cimi03016
]
108313131 (XRN2)
Transcription machinery [BR:
cimi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108313131 (XRN2)
Messenger RNA biogenesis [BR:
cimi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
108313131 (XRN2)
Ribosome biogenesis [BR:
cimi03009
]
Eukaryotic type
Pre-60S particles
RNases
108313131 (XRN2)
Transfer RNA biogenesis [BR:
cimi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
108313131 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
108313131
NCBI-ProteinID:
XP_037599022
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPDHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFTPTGILTPHALGSRNSPGSQVANNPRQAAYEMRMQNNSSPSVSPNTSF
TSDGSPSPIGGIKRKAEDSDSEPEPEDNVREQTRLNFGCASWKWYYPFHYAPFASDFEGI
ADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLN
GKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILE
LYQTGSTEPVDVPPELCHGIQGKFSLDEEAVLPDQIVCSPVPMLRDLTQNTVVSINFKDP
QFAEDYIFKAVMLPGARKPAAVLKPHDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTL
GHVMPRGSGTGIYSNAAPPPGTYQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQ
QRFDRGVGAEPLLPWNRMLQTQNAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKY
PLPPPSGRYNWN
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttcttccgctggctcagccgcaagtacccgtccatcatagtcaac
tgcgtggaagagaagccaaaagaatgcaatggtgtaaagattccagttgatgccagtaaa
cctaatccaaatgatgtggagtttgataatctgtatttggatatgaatggaatcatccat
ccctgtactcatcctgaagacaaaccagcaccaaaaaatgaagatgaaatgatggttgca
atttttgagtacattgacagacttttcagtattgtaagaccaagacgacttctctacatg
gcaatagatggagtggcaccacgtgctaaaatgaaccagcagcgttcaaggaggttcaga
gcatcaaaagaaggaatggaagcagcagttgagaagcagcgagtcagggaagaaatattg
gcaaaaggtggctttcttcctccagaagaaataaaagaaagatttgacagcaactgtatt
acaccaggaactgaattcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaatttgacagttattttatctgatgctagtgct
cctggtgaaggagaacataaaatcatggattacattagaagacaaagagcccagcctgac
catgacccaaatactcatcattgtttatgtggagcagatgctgatctcattatgcttggc
cttgccacacatgaacccaactttaccattattagagaagaattcaaaccaaacaagccc
aaaccatgtggtctttgtaatcagtttggacatgaagtcaaggattgtgaaggtttgcca
agagaaaagaagggaaagcatgatgaacttgccgatagtcttccttgtgcagaaggagag
tttatcttccttcggcttaatgttcttcgtgagtatttggaaagagagctcaccatggcc
agcctaccattcacatttgatgttgaaaggagcattgatgattgggttttcatgtgcttc
tttgtgggaaatgacttcctccctcacttgccgtcattagagattagggaaggtgcgatt
gaccgtttggttaacatatacaaaaatgtggtacacaaaactgggggttaccttacagaa
agtggttatgtcaatctgcaaagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaaaagaaaggatgatgaggacagttttagaagacgacagaaagaa
aaaagaaagagaatgaagagagatcaaccagctttcactcctactggaatattaactcct
catgccttgggttcaagaaattcgccaggttctcaagtagccaataatccgagacaagca
gcctatgaaatgaggatgcagaataactctagtccttcagtatctcctaatacgagtttc
acatctgatggctctccatctccaataggaggaattaagcgaaaagcagaagacagtgac
agtgaacctgagccagaggataacgtcagagagcaaaccagattaaattttggctgtgct
tcctggaagtggtattatccatttcattatgcaccatttgcttcagactttgaaggcatt
gcagacatgccatctgattttgagaagggtacaaaaccgtttaaaccactggaacaactt
atgggagtttttccagctgcaagtggtaattttctacctccatcatggcggaagcttatg
agtgatcccgattctagtataattgacttctatcctgaagattttgctattgatttgaat
gggaagaaatatgcatggcaaggtgttgctctcttgccatttgtggatgagcgaaggcta
cgagctgccctagaagaggtatacccagacctcactccagaagagaccagaagaaacagc
cttggaggtgatgtcttatttgtggggaaacatcacccactccatgacttcattttagag
ctgtaccagacaggttccacagagccagtggatgtaccccctgaactatgtcatgggatt
caaggaaagttttctttggatgaagaagccgttcttccagatcaaatagtatgttctcct
gttcctatgttaagggatctgacacagaacactgtagtcagtattaattttaaagaccca
cagtttgctgaagattacatttttaaagctgtaatgcttccaggagcaagaaagccagca
gcagtattgaaacctcatgactgggaaaaatccagcaatggacggcagtggaagccccag
cttggctttaaccgtgaccggaggcctgtgcacctggatcaggcagccttcaggactttg
ggccacgttatgccaagaggctcaggaactggtatttacagcaatgctgcaccaccacct
gggacttaccagggaaacttatacaggccgctgttgagaggacaagcccaaattccaaaa
cttatgtcaaatatgaggccccaggattcctggcgaggtccccctccccttttccagcag
caaaggtttgacagaggcgttggggctgaacccctgctgccatggaaccggatgctgcaa
acccaaaatgcagccttccagccaaaccagtaccagatgctagccgggcctggtgggtat
ccacccagacgagatgatcgtggagggagacaggggtatcccagagaaggaaggaaatac
cctttgccaccaccctcaggaagatacaattggaattaa
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