Cebus imitator (Panamanian white-faced capuchin): 108315562
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Entry
108315562 CDS
T08783
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108315562 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cimi03021
]
108315562 (PCF11)
03019 Messenger RNA biogenesis [BR:
cimi03019
]
108315562 (PCF11)
Transcription machinery [BR:
cimi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108315562 (PCF11)
Messenger RNA biogenesis [BR:
cimi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108315562 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
108315562
NCBI-ProteinID:
XP_017400413
Ensembl:
ENSCCAG00000021681
UniProt:
A0A2K5PWA4
LinkDB
All DBs
Position
Unknown
AA seq
1686 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPATVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSSLGPGSASSKLHVSQIPPMAVKAPHQVPVQSEKSRPGPSLQIQDLKGTNRDPRLN
RISQHSHGKDQSHRKEFLMNTLNQSDIKTSKTIPSEKLNSSKQEKSKSSEKITKKELDQL
DSKSKSKSKSPSPLKNKLSHTKDLKNQESESTRLSDMNKRDPRLKKHLQDKTDGKDDDVK
EKRKTAEKKDKDEHMKSSEHRLPGSRNKIINGIVQKQDAITEESEKQGTKPGRSSTRKRS
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGAKQSHMEEFTPSSRE
DRNAKRSTKQDIRDPRRMKKSEEERPQEITNQHSTKSGTEPKENIENWQSSKSAKRWKSG
WEENKSLQQVDEHSKPPHLRHRESWSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDDFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLTDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMI
FEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGTAIRFDGPHGQPGGGIRFEGPLLQ
QGVGMRFEGPHGQSVSGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFD
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQ
PGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSF
NQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRSSGHY
FDEKNLQSSQFGNFGNLPAPMTVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGFVQ
NPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVSEVAAQPPLEEEEDQ
NEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPSEIKTEN
DTVESV
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtgctgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcgctcgaagacctgaccttcaatagcaagccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcccgttatgtaccttatggattctatt
gtgaaaaacgttggaagagagtatcttactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaagttacgttcc
acatgggatgaaatattcccattgaagaaactttatgccctggacgtcagagtcaattca
ttagatcctgcttggccaattaaacctctaccccccaatgtgaatacgtctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaggaaccttcaacacctgctacggtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacacaa
gaacaactgataaggcagcagttgctggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagctggagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaagaaacatccagtttaggtcctggatctgcatcatccaaattacatgtttcacag
attccccctatggcagttaaagctcctcatcaggttcctgtgcagtctgagaaaagccgt
ccaggaccatccttacaaattcaggatttgaaaggaactaaccgagatcctcgtctgaac
aggataagccagcattctcatggaaaagatcaaagtcacaggaaagaatttttaatgaac
acattaaaccagtctgatattaagacaagtaaaactataccctctgaaaaactaaattca
tccaagcaggaaaaaagtaaatcaagtgaaaaaataaccaagaaagaacttgaccaatta
gattctaaatcaaaatcaaaatcaaaatcgccgtcacctttgaaaaacaaattatctcac
acaaaagacttgaaaaatcaagaatcagagagtacgaggttgtctgatatgaataagaga
gatccaagactaaaaaagcatcttcaggataagactgatgggaaagatgatgatgtgaaa
gagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaaatcatctgaacac
agactgcctggaagtagaaataaaatcataaatggcattgtacaaaaacaggatgcaata
acagaagagtcggaaaaacaggggacaaaaccagggagatcgagtactagaaagcgatca
agatctcgatcacccaagtctaggtcaccaattatacattccccaaagagaagagatagg
cgatcacccaaacgaaggcaaaggagtatgtctccaacatctacacctaaagctggaaag
attcgccaatctggagctaagcagtcacatatggaagagtttacaccatcttcaagagaa
gacagaaatgctaagagaagtactaagcaggatattcgggatccaaggcgaatgaaaaag
agtgaagaggagcgaccacaagaaatcacaaatcagcattctacaaagtcaggcactgaa
ccaaaggagaatatagaaaactggcaaagttccaagtctgccaaaagatggaaatctggt
tgggaagaaaataaaagcttacaacaggttgatgaacatagtaaacctcctcatctaagg
catagggagagctggtcaagcactaaaggaattttatcacctcgagccccaaagcagcag
cagcatcgtttaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gacttccttgttgttgtacatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttaactgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtgcgagaagagcagagatctccattcaatgat
cgttttccacttaagcgacctcgatatgaagattcagataaaccatttgtggatagccca
gcatcaagatttgctggcctggatacaaatcagcgacttacagctttagctgaagacaga
ccattatttgatggacctagtaggccatcagtaacaagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctcgaattgatggacctcctacaccagcttctctt
cggtttgatgggtcaccaggacaaatggggggaggaggccctttgagatttgaagggcca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtgggg
acacctctgcgatttgagggcccaattggtcaagcaggaggaggtggttttcggtttgaa
ggttcccctagcctgaggtttgagggatctgcaggtggtttgcgatttgagggaccaggg
ggccagcctgtgggtggtctgaggtttgagggacatcgtggtcaacctgtgggcggtcta
aggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgtaggtggacttagatttgaggggggtcatggtccatcagggactgcaattagg
tttgatggacctcatggtcagccaggtggtgggatcagatttgagggccctttgctacag
caaggagttggaatgaggtttgagggtccccatggtcagtcagtatctggtctgagattt
gagggacaacataatcagcttggtgggaaccttaggtttgagggtccacatggtcaacca
ggggttgggataaggtttgaaggccctttagtccaacaaggaggtggaatgaggtttgac
ggtccttctgtaccaggaggtggcctacgaattgaagggcctctgggtcaaggtggtcca
agatttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccgtcactattg
ccaagatttgatggattacatggtcagccaggtcctagatttgaaaggactcctggtcag
ccaggccctcagaggtttgatggaccacctggacagcaggttcaaccaagatttgatggt
gtacctcaaagatttgatggtccacaacatcagcaggcatcaaggtttgatattcccctt
ggtcttcaaggcacaagatttgacaatcatccttcacaaagacttgaatcagtatctttc
aatcagactgggccatataatgatccacctggcaatgcttttaatgccccatcccaagga
ctgcagtttcaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatgga
ccacatggccctggaaaccagagtttttctaatccacttaacagatcttctggacactat
tttgatgaaaaaaatcttcagagttctcaatttggaaactttggcaatttacctgctcca
atgacagtaggaaatattcaggcatctcaacaggttctaactggtgttgctcagccagta
gcttttggtcaaggacaacagtttttaccagttcatccacaaaatcctggatttgttcag
aatccgtcaggagccctccctaaggcatatcctgataatcatctcagtcaggtggatgta
aatgaattgttttcaaaattgctaaaaacaggaattctcaaattgtctcaacctgattca
gctacaacacaagtaagtgaagtagctgctcagcctccccttgaagaggaggaagatcaa
aatgaagatcaagatgttccagatcttactaattttacagttgaagaattgaaacaacgt
tatgatagtgttataaatcgactgtacactggtattcagtgttactcttgtggaatgagg
tttacaacatcacagacagatgtatatgcagatcatttggactggcattatcggcaaaat
agaactgaaaaggatgttagcagaaaagtcactcatagacgttggtactacagtttaaca
gactggatagaatttgaggagatagctgatctggaagaacgggcaaagagccagtttttt
gaaaaggttcatgaggaagttgtgctcaaaactcaagaggctgctaaagaaaaagagttc
caaagtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaggaacaa
tttgaacagtactgggatgaagaggaggaggaatggcatttgaaaaatgctattagagta
gatggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgat
tgtacaccatcacccagcaagacaccagttgaaaaccccttgaatattatgttgaacatt
gtcaaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacgaattgat
acaccaccagcttgtacagaggaaagcatagcaacaccctctgaaattaaaacagaaaat
gacacagtcgagtcagtttaa
DBGET
integrated database retrieval system
