Ciona intestinalis (yellow sea squirt): 100145818
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Entry
100145818 CDS
T01056
Symbol
htt
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100145818 (htt)
04131 Membrane trafficking [BR:
cin04131
]
100145818 (htt)
03029 Mitochondrial biogenesis [BR:
cin03029
]
100145818 (htt)
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100145818 (htt)
Membrane trafficking [BR:
cin04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
100145818 (htt)
Mitochondrial biogenesis [BR:
cin03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
100145818 (htt)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_N-HEAT
Htt_C-HEAT
Htt_N-HEAT_1
Htt_bridge
HEAT
HEAT_EF3_N
HEAT_Maestro
TP_0752_M
Motif
Other DBs
NCBI-GeneID:
100145818
NCBI-ProteinID:
NP_001342356
LinkDB
All DBs
Position
5
Genome browser
AA seq
2948 aa
AA seq
DB search
MEKLVKSVNALKFFYGGLSSEDKTQKDALQSPNERQSHCNIVLESIISPSIRSLADYPGL
LAVSVETLLQSCADDNADVRLNANECLNRLIKGLYEISNSKILVELYKEIKKNGHPRSLR
AALDRFSRLSHNIRSNKCRPYILNLLPCLCRISQREEDGVQETLGLSLVKIFKILGPFAS
ESEIQGLLASFLKNLSHKSATMRRTACVCLHSVILNCRKQNLVIGPLMNSILDILLQRNT
DRNTVLGCLQALRILSPLFETCVPGKISEQHILNEHRDLVLKVFDACVFYLDNTDHTIVT
AALELLEHLLNEFSSELASVLIVCGKLKPTSFTPSTVLPDEVETKATSVTTDEVSSLSSL
ASSTIEDKLSCIRLLPVEDQDPPSNPLLPHNEQTSQTNGATEHKDQTEPSDLDQTITNHD
EDAKLPENGHEESLSESSLEKMASDPISTSSDLIPVSHLYATESSTLPIITLARMLCQRF
LLSMETGEVLPDKQVRVSNKNLTMNTLSQLVKIYPAAVCHSLLYYESSSQYMTNVFLYST
HSDPKLRGSAVTLASVFIDAVVTRNRKGIKDWFKNVERNSSTSLKCPTIEDLISLIHGGL
IDESSTTTRQACSAVTSCVHTLLNSMYFSYGLELLHMVVGLQSSTYWLIKVSLLELLASL
NYRQIAYLELLSKRDAASVKTQSLPHQALSIALKCLCDDDLRLRKTAAATIVTMPTSFPT
PNELYGDLLTSEAAEMTRQWMGGSEMRNEDEEEQSNDAGSAKSLLKTYRGYEMDCKNSGS
ITDSLSYIVGEVSTMLTNSSNKHQTYGCLLALKQLSIKYMVSNHPVAWGCYAVTDDRSRS
SSNESETSSNSSDSKIPKRQSSNPNGSQQQFGILPFVMSLLHSAWLPLDVTAHSDALVLA
GNLVAGAASDGLKVFGPVAIEDQSFEKVSVKTVTSNARSWATIYDPVLGSYANQLFTHLT
RLSSIMHHVISEVTPSPPNKSVLPNIAPGNIPSPIKRKEKAPGEQNRSSPPLTRKLLPTS
SLGKPGNKENQDEKPTKKLIGSFYNNRTLMRLFDQLTGSYKNYKVSLEFGCDDRFCSFLS
STLDVLSQVLELAVFQDIGSYTEELLNYMKSLFTVEPTLTIQSVQQLLKALFGTNLVSNM
IPHDDSKPPNPPTSPILLNSTAGFYHQIFHHPLNHLTMAIANSSFHHSLQTKSPPKENDG
WFGSIKKKVEKKLNDVSKNSKGSKSSIQNYIRLFEILVIKSLKLYTTTSSVEFQQKHVLN
LLAQLVQLRVNYCMLDSDQVFINFIIKQFESIEGGLVRGSESLIPHVFFFLVLLSYERYR
TKAVITMPKIIQLCDGLMASGQGSASHVIPAMQPIIHDIYVVRASSKNEPPEVTTQREVV
QFTLLKLLQHPQVFKMLITILVHGRRENVEKWKKYSRQVADVLLPLLSQLKVNVTSHDDV
STLHSLFEAISPSALRPIGLLMDLLLKMPKSLNSISHIHRWLTNILVLLRVLICQASEHD
ILDNIDLSKVKIKHMTCTHMEYLHSDQTSQEEEEQNMNEVFSPADILAMFFHQVIGSCCS
TLLHYSTNPRTKSDESSQILLSQQINELFLALTYIHRSGSFKNLTSACKKVSSTNLNGFY
TSDQMVSTFLHLTYSHPIITVMWAQYLSHFVPVTAQFWENFTGCKDTNDFPLNRNIVKKG
CVILLADYVCQNSNQSELSLWLAEHHVNDIIMMSEEPPVQDFLTSVHLGAEESACLIKAI
SKLSKTQQNIKVSFILRILKCLSGVSIKSSESLISLLLSPKFLFSPVRRVFAASLLFLQS
TVENILELNKEEALEIIPTEFTQNLMQKGESLKEKSQYILFCDLISQLHSHVTGEQPITS
EKPGPTIQALMEKPNQNWFNSVILSCLDENRWTPECARVLACADFDDIIDIQGNNNFTAQ
HLASCLYNGIHEVTSMHGALIPYPEDKTSNLLAASLLTLDKKIKAVLEITPGNTEFDTPL
MDNSNTEIKFIGDKNFQQNLMWLNRCLVNMLKFHHILPTQYQLPNVNSNDYLNIIVLGFK
VTQYGIHKGKIPSLQDIVCVLESLQQALAVQSLHAMFINEVKWMLQTVQVLFTIMEIYIG
RISYEPPYLPSCIDKEEASSIYNNSSNPLSSCIKLYQMLSLFRRQHKNKEMFAKIPTYIV
RPINNIILHLATSPLFKNYVRTPLVVWTFGWNPALGGDTGTSLPEIPSDFLQEKEVLQEY
IAIVNQIGWTKRTEFEETWASLLGVLVSQPVVSDESSGEAMHTEISSLAIRGLTSLVVDC
ALYPECGRKATSKYQVFYRHPTFKLGNTKAGRQLLKVRGILDDESRFMTQRKSHQDTHHQ
NTSLNDSSNLSSSLQSNKWITMNTERVLSSSAYGLAQSSVRSFHLLHGITPMKEELYDGD
YDSATMHSFEYDNSLSNDGSDVSDMFETSEAETPDVPTNPAPPLSPLRIRDGVDVHSCVQ
FLLELYTEWFRTTAQTNQISGSSSTIARPLLCECVRSLLLISDLFTEKQQFEWMFVALTT
LHNAQPADDDILMQYITPSMCKAGSVLGLNSETSENVLRVLEPSLRSTLLSCRTSALVGL
LQCIESYPNPNLRGIIDLASQFIPPNFVAISTCPSLFNEDYVVLLASVAFYIIEKCHDAV
MPEFTSVIIQACTLIISSRDVTSVQSRVFHSVTHGLQRLILSFSISASECDSILKVAAEQ
VHTNPWLPRATAACGLMMTCMYCGRMRISSNPDHGSPHGGSPEHEDVVESRLLAMERVTL
LFERIRKGYPHEARVMSKVLPSMLDDFFPAQDIMNKIIAEFISTLQPFPASVAQILYEVF
QSLLERDQSHLVQEWVMLSLGNAIQRTPLQTAVWCLTCLFSSASTNRWISSMVPLIISRV
HDPTLDVNWTFFCKAAVDFYTCQLSEELDRRSFHAIFSTSSSSREPGSPYKLLLDCISRI
NGEQGILQ
NT seq
8847 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagttagtcaagtctgtcaatgctctgaagtttttttatggtggactcagctct
gaagacaagactcaaaaagatgcacttcagtctccaaatgaacgccaaagtcactgcaac
attgtattggaatcaataatttctccttcaatcagaagcttagcagattatcctggtttg
ctggctgtttctgttgagacattgctacaatcgtgcgcagatgacaatgcagatgtgagg
cttaatgcaaacgaatgtttaaatcgtctcattaaaggtctttatgaaattagcaacagt
aagatactggttgaactctacaaagaaatcaaaaagaatggtcaccctcgtagtttgcga
gcagctttggaccgcttctctcgtctttctcacaacatccgctcgaataaatgtcgtccc
tacatcctcaatctcctcccatgtctttgccgcatctcccaacgtgaggaagatggagta
caggagacactcgggttatcacttgtgaaaatctttaaaattcttggaccctttgcaagt
gaatcagaaatccaaggtcttcttgcttcttttctcaaaaatctctctcacaaatcggcg
acgatgcgtcgaacagcatgtgtgtgtctccactctgttattctaaactgcaggaagcaa
aacttggtaattggccctttaatgaactcaatattagatatcctacttcaaagaaacaca
gacaggaacactgtgttgggttgtttgcaagctttaagaattcttagtccgctgtttgaa
acgtgtgttccaggaaaaatatcggagcaacatattttaaatgaacacagagaccttgtt
ttaaaggtgtttgatgcttgcgttttttatttggacaacactgaccacaccatcgtcacg
gcagcactggaactgcttgagcatctgcttaatgaattttcatcagaacttgcttccgtg
ttgattgtatgtggaaagcttaaaccaacgagtttcacaccaagcacagtgttgccagat
gaagttgaaacaaaagcgacttcagttactacagatgaagtatcatccctaagcagcctc
gcaagctcaacaatcgaggataaactttcctgcatccgacttcttcctgtggaagatcaa
gaccctccatccaatccattgttacctcataatgagcaaacttcacaaacaaacggagca
actgaacataaagatcaaacagaaccttctgatttggatcagaccatcactaatcatgac
gaagatgccaaacttcccgaaaatggtcacgaagagtcattaagcgagtcctcccttgaa
aagatggcatctgatccaatttctacatcttcggacctcatccctgtttcccatctttat
gcaactgaaagttcaacactaccaatcataacacttgcccgaatgctctgccaaagattc
ttattgtcaatggaaacaggtgaagtcctgccagataaacaggtcagagtaagcaataag
aacctgaccatgaacactttatctcaacttgttaagatttatcctgctgctgtatgccac
tcacttctatactatgagagttcaagccaatatatgacgaatgtttttctctattcaaca
cattcggaccccaaattgcgaggttccgctgttacattagccagtgtgtttattgatgca
gtagtaacacgaaacagaaaaggaataaaagattggtttaaaaacgttgaaagaaattct
tcgaccagcttaaaatgtccaacaattgaggaccttatttcgctgattcatggtggatta
attgacgagtcatccacgacaacgaggcaagcgtgctctgcagtgacatcatgtgtccac
acacttttaaatagcatgtacttcagttatggattggagttgttacatatggtggttggt
ttacaaagcagcacgtattggcttatcaaagtcagcctgcttgaacttcttgcttcactt
aactacagacaaatcgcttatttggagctgcttagcaaaagggatgctgcatctgtgaag
acacagtcacttccccatcaagctctctcaatcgccctcaagtgcttgtgtgacgatgac
ctgcggctccggaaaacagcagctgccaccatcgtaaccatgccaacaagcttcccaacc
ccaaatgaactctacggagaccttttgacctctgaagctgccgagatgactcggcagtgg
atgggaggttcagagatgaggaacgaggatgaagaggagcagagcaatgatgcgggatca
gcgaagagcttgttgaaaacatacagaggatatgagatggattgcaagaatagtgggagc
ataacagacagcttatcctacatagtgggcgaagtaagcaccatgctaactaattcatcc
aataaacaccaaacatatggttgcttgcttgcactcaaacaactgtcaatcaaatacatg
gtgtccaatcaccctgttgcatggggatgttatgcagttactgatgataggtctcgtagt
tcaagcaatgaaagtgaaacttcttccaattcttctgattctaaaattccaaagagacag
tcttcaaatcctaatggaagccagcaacaatttggaattcttccttttgtgatgtcatta
ttgcactcggcatggctaccacttgatgtcactgcacacagcgatgcgttggtgttggcg
ggaaatcttgttgcaggagctgccagtgatggtttgaaagtctttggtcctgttgctatt
gaagaccagtcttttgaaaaagtttcagttaagactgtaacttccaatgctcgtagctgg
gcgaccatatatgatccagtgcttggttcatatgcaaatcagcttttcacgcatctcacg
agactctcatctatcatgcatcacgtgatatctgaagtaactccatcaccaccaaataag
agcgtgcttcctaatatcgctcctggcaacatccctagtccgataaagaggaaggaaaag
gctcctggagagcagaataggtcctctcctccgctgacgaggaaattgcttcctacatcg
tcgctcggcaagcctgggaacaaagagaatcaagatgagaaaccaacaaagaagctgatt
ggttcattttacaacaaccgaactctgatgagattgtttgatcaattaactgggtcatac
aaaaactataaagtaagtctggagtttggctgtgatgacagattttgttcgtttctctct
tcaacgcttgatgttttatcacaagtgctagagttggctgtcttccaagatattgggagt
tatactgaagagttgcttaactatatgaagagtctgtttactgtggagcctactttaact
atacagagtgtccaacaattattgaaagctttatttggcacgaaccttgtaagtaacatg
ataccccatgatgatagcaagccaccaaacccccctacaagtcccatcctccttaactct
actgcaggattctaccatcagatattccaccatccactcaaccatttaactatggccatc
gctaactcatctttccatcattcgctacaaactaaatcccctcctaaagaaaatgatgga
tggtttggttctatcaagaaaaaggtggaaaaaaagttaaatgacgtttccaaaaattcg
aaaggcagcaaatcttcaatacagaactatattcgattgtttgagatacttgtgattaaa
tcacttaagctttacacaaccaccagctctgtggagtttcaacagaaacacgtcttaaat
ttgcttgctcaactggtacagttacgagtgaattactgcatgttggattcagatcaagtt
ttcatcaattttatcattaaacagttcgaatctattgaagggggattagtccgaggatca
gagagcttgatcccccatgtcttcttcttcctcgtccttttgtcttacgagcgttatcgc
acaaaagctgtgatcacgatgccgaaaatcatccaattatgtgatggactcatggccagt
ggtcagggttctgcatctcatgtgattccagccatgcaaccgataatccatgatatttat
gttgttcgtgcatcgagtaaaaacgagccaccagaggtcactacacagcgcgaggttgtt
caattcactctgctcaaacttttacaacatccacaggttttcaaaatgctgatcacgatt
ctggttcacggtcgtcgtgaaaatgttgagaaatggaagaaatattcgcgacaagtcgcc
gatgttctacttccattgctcagccaactaaaggtgaatgtgacgagtcatgatgatgtc
agcacgttacattcattgtttgaagcaatatcaccgtctgctttgagaccgattggtctt
ttgatggatttgttgctgaagatgccaaaatcactgaattcaatatctcacatccaccgc
tggcttactaacatacttgtcctactacgtgtgcttatttgtcaagccagtgaacacgat
attctggataatattgacttgagtaaagtcaagatcaaacacatgacatgcactcacatg
gaatatttacactctgatcaaacatcacaagaagaagaagaacaaaatatgaatgaagtt
ttctcaccagcagatatactagctatgtttttccaccaagtgattggttcatgctgttca
acactactacattattccacaaatccaaggacaaaaagtgatgagtcatcgcagatcttg
cttagtcagcaaataaatgaactttttcttgctcttacttatatacacagatctggttca
tttaaaaacttgacatctgcatgcaagaaggtcagctcaactaacctcaatgggttttat
acaagcgatcaaatggtttccacattccttcatttaacttacagtcatcctattatcact
gttatgtgggctcaatacctatcccattttgtgccagtcactgcacagttttgggagaac
tttacaggttgtaaagatacaaacgatttccctttaaatcgaaatattgtaaaaaagggc
tgtgtcattttattagctgactatgtgtgtcaaaactcgaaccaatctgagttatcgtta
tggttggctgaacaccatgttaatgacatcataatgatgtcagaggagcctccagtccaa
gactttctcacatctgtccacttgggggcagaagagagcgcttgtttaatcaaagcaatt
tcaaaattatcgaaaacacaacaaaatataaaggtatcattcattttaaggattttaaaa
tgtttgtctggagtttcgataaaaagttcagaatccttgatttcccttttgctctctcct
aagttccttttctcaccagttaggagggtatttgctgcttctctactatttctacaatct
actgtggaaaatattttggaactaaacaaggaggaggctttggaaattataccaacggaa
tttactcaaaatttaatgcaaaaaggtgaaagtttaaaggaaaagtcacaatatattctg
ttttgtgacctgattagtcagttgcatagtcatgtgactggagaacagccaatcacaagc
gagaaacctggtccaactatccaagccttgatggagaaaccaaaccagaattggtttaat
tctgttattctatcttgccttgatgaaaacagatggacaccagagtgtgctagagtgtta
gcttgtgctgattttgatgacatcattgatattcaaggaaataataatttcacagcacag
caccttgcatcatgtttatataatgggatacatgaagttacttcaatgcatggagcactc
attccttatcctgaggataaaaccagcaatttgcttgcggcatcactgcttaccttggat
aaaaaaatcaaggctgttttggaaatcacacctggaaacactgagtttgacacaccactt
atggataattctaatacagaaatcaaatttattggggataaaaacttccaacaaaatttg
atgtggttaaacagatgcttagttaacatgttgaaatttcatcacatcctacctacacaa
taccaactaccaaatgtgaactctaatgattatttaaatatcattgttcttggttttaag
gtaacgcaatatggcatacacaaaggcaagataccttcattgcaagacatagtttgtgtt
ttggaaagcttgcaacaagcactggctgtacaatccctccatgcaatgtttatcaatgaa
gtcaagtggatgttacaaactgttcaagtcttatttaccatcatggagatatacattggg
agaatttcttatgagccaccttacctacccagctgcattgacaaggaagaagcgtcatca
atatacaacaactcctccaacccacttagtagttgcatcaaactatatcagatgctctcc
ctgtttagaaggcaacacaaaaataaagaaatgtttgcgaaaattccaacctatatcgtt
agaccaattaataacattatcctacatcttgctacttctcctttgttcaaaaactatgtg
agaactcctctcgtagtttggacatttggatggaacccagcactaggtggagacacagga
acctcactgccggaaattccgtccgatttcttgcaagagaaagaagtcttgcaggaatat
attgcaattgtgaatcaaattggttggacaaaacgaacagaatttgaagaaacatgggcg
tctctgctcggcgtgcttgtatcacaacctgtagtttctgatgagtcatcgggagaggcc
atgcatacagagatatcaagtttggccatcagaggtctcacctcgctagttgtagattgt
gcattgtatcctgaatgtggaaggaaggctacaagcaaataccaggtgttttatcgccac
cccacgtttaaacttggcaacacaaaagctggaaggcagttgctgaaagtccggggtatt
ttggatgatgagtcacgcttcatgacacagcgaaaatcacatcaagatacacaccaccaa
aatacttcactcaatgattcaagcaatctgtcttcatcgttgcaatcaaataaatggata
acaatgaacacagaacgtgtattgtcatcctctgcttatggtcttgcccagtcttctgtg
agatctttccacctgcttcacgggatcacgcccatgaaagaggaattatatgatggtgat
tacgactcggctacaatgcactcatttgaatatgataactcgctaagtaacgatggtagt
gatgtgagtgatatgtttgaaacatcagaagctgaaacaccagatgttccaaccaaccca
gctccacccctctcaccattgagaatacgagatggtgtagatgttcactcatgcgttcaa
ttcctgctcgagctctacacagagtggttccgcaccactgcacagaccaatcagatctca
ggatcttcctcaacaatcgcgagacctttactatgcgagtgtgtccgatcactcttacta
atatcggatcttttcaccgagaaacaacagttcgaatggatgtttgttgcactcacaaca
ttacacaatgcacagcctgcagatgatgatatactaatgcagtatatcaccccatccatg
tgtaaagctggctctgtacttggattgaattcagaaacctcggaaaatgttctaagagtt
ctagaaccttccttgaggagcaccttgctatcatgtcgtacctcagcactggtggggtta
cttcaatgcattgagagttacccaaaccctaatttacgtggcatcatcgacctagcttcg
caattcattcctcccaactttgtggcaatttcaacatgcccttcgttgttcaatgaagac
tatgttgtccttctagcttcggttgctttttatatcatagagaaatgccatgatgctgtt
atgccagagtttacttctgttataattcaggcttgcacattgatcatatcttcacgtgat
gtaacttctgtccaatctcgtgtttttcactcggtcacacatgggttacaacgacttatt
ctctcgttttccatttctgcttccgagtgtgattctatcctcaaggtggcagcagagcag
gtgcacaccaatccttggttaccacgagcaaccgcagcttgcggactgatgatgacttgc
atgtattgtggtcgcatgaggatcagttcaaatcctgatcatggttccccacatggtggc
agtccagagcatgaggatgttgtagaaagtagattgctcgctatggaacgcgttacactg
ctttttgagaggattcgtaaaggttatcctcacgaagcaagagtgatgagcaaagtcctc
ccatccatgctggatgacttcttccctgctcaggacatcatgaacaagatcatcgctgag
tttatctccacccttcaacctttccctgcgtcagtagcgcaaatactttatgaggttttc
cagtcgttacttgaacgagatcagtcacatttagtgcaggagtgggtgatgttatcttta
ggtaatgcaattcaacgcactccgttacagacagcagtctggtgtttgacttgcctattc
tccagtgcttctaccaacagatggattagttccatggttccattgataataagtagagta
catgatccaacattagatgtgaattggactttcttctgcaaagctgctgtggatttttac
acatgccagctctcagaggagttggatcgtcgctcctttcatgcgatcttcagcacatca
tcatcatccagagaaccaggatcaccatacaagctcctcctagactgcatctcccgcatc
aatggagagcaagggattcttcagtga
DBGET
integrated database retrieval system
