Ciona intestinalis (yellow sea squirt): 100169885
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Entry
100169885 CDS
T01056
Symbol
cbf-2
Name
(RefSeq) transcription factor CBF/NF-Y/archaeal histone -2
KO
K02326
DNA polymerase epsilon subunit 3 [EC:
2.7.7.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03030
DNA replication
cin03082
ATP-dependent chromatin remodeling
cin03410
Base excision repair
cin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100169885 (cbf-2)
03410 Base excision repair
100169885 (cbf-2)
03420 Nucleotide excision repair
100169885 (cbf-2)
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100169885 (cbf-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cin03032
]
100169885 (cbf-2)
03036 Chromosome and associated proteins [BR:
cin03036
]
100169885 (cbf-2)
03400 DNA repair and recombination proteins [BR:
cin03400
]
100169885 (cbf-2)
Enzymes [BR:
cin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
100169885 (cbf-2)
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
100169885 (cbf-2)
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
100169885 (cbf-2)
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
100169885 (cbf-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CBFD_NFYB_HMF
Histone
CENP-T_C
PXA
betaPIX_CC
DUF6616
DUF3744
Topoisom_I_N
Motif
Other DBs
NCBI-GeneID:
100169885
NCBI-ProteinID:
NP_001122341
Ensembl:
ENSCING00000023717
UniProt:
Q1RL82
LinkDB
All DBs
Position
Unknown
AA seq
156 aa
AA seq
DB search
MAEKPEDLNLPNSVIGRIIKEALPDGVIISKESRSAISKAASVFVLYCTSCANNFALQQK
RKTLKDTDVIAALEDMEFEEFVPLLKDYLETYKTEQKNKKSATEKRKKAKEALENSLDNL
NEQESEDVEMKEVDKSEDEVIDADGPQELDAHKTDN
NT seq
471 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaaaccggaggatttaaatcttcctaactctgtcattggtcggattattaaa
gaagctttgccagacggagttattatttccaaagagtccagatctgcgatatctaaagcg
gcaagtgtttttgttctgtactgcacgtcctgcgcaaacaattttgctctgcaacaaaaa
cgcaaaaccttaaaggacacagacgtaattgccgcattggaagacatggagtttgaagaa
tttgtacctctgctcaaagactatttggaaacttataaaacggagcaaaagaataagaag
tccgctacagagaaacgtaaaaaagcaaaagaagctcttgaaaacagtttggataactta
aatgagcaggaaagtgaagatgtggaaatgaaagaagttgataaatcggaagatgaggtt
attgatgcggacggtccacaagaacttgatgctcacaaaactgacaattga
DBGET
integrated database retrieval system
