Ciona intestinalis (yellow sea squirt): 100169930
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Entry
100169930 CDS
T01056
Symbol
ci-zf(ubr)-5
Name
(RefSeq) E3 ubiquitin-protein ligase UBR5 isoform X1
KO
K10593
E3 ubiquitin-protein ligase EDD1 [EC:
2.3.2.26
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100169930 (ci-zf(ubr)-5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
100169930 (ci-zf(ubr)-5)
Enzymes [BR:
cin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
100169930 (ci-zf(ubr)-5)
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
HECT type E3
100169930 (ci-zf(ubr)-5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
E3_UbLigase_EDD
MLLE
zf-UBR
Ank_5
Motif
Other DBs
NCBI-GeneID:
100169930
NCBI-ProteinID:
XP_018673160
LinkDB
All DBs
Position
2:3970211..4032923
Genome browser
AA seq
3015 aa
AA seq
DB search
MKPFVSNVRFVVHPLTKGSRLFLDEEEKFQEKLLRLSESTFSAHNSDLPPVLKILQQQVI
SDCAVGPNHLSFLLDDGRVCRVGYTAKSRVAHSEKTSEDLPKEKNQQNSRAGTRMCKSMR
TSSDPPWALTADFLGMGSSGSWSRWGNRIGVVRSTTSSSGTTTAVTTSARKTTRGSTNST
SISSSSIRLIRTGQVRGRNLPLMSSGQRAILSAQVPEDLINQVQNVLQGKSRNVIIRELQ
RTSLDVNLAVNNLLSRDDEDNDDMDDAGADYIHGEELMSLFEGAVNSGDHPRVVIDAETM
LPEDLLGYTFPSRTSTQQRGLGGSSDRNADKEEPDEESSKQGSSNWSEAKNSDSAQASKP
QTKPIPGSSVDSGLTLGSDIEWWMDGDEPVKFKLIGAMHSELTGVDLEGCLRQWKWSSEK
PYHETNFHPRTEFLELGEDKISFLATSSIRASVVTEGGAVATWMDETVCAHTGSLESPRQ
PSDSLRNEKVKSLCICPLYSAVLTEAGRVYWWGILPFSQRKKLLEKSQNNLLQNTEKSEI
SVGSQVCLRSLPSYHAGSIAINTSSGEPRVGRLLEVVWSLEKKCSFKILSSSQQEKENEK
QLEPKSETSLLDSCKPGKRKRDSSVDKEENKEEENTEQWDLREVVFVEDVKSVPIGKVEK
VDGNIVAVNFSSDNPGNRDSSLQSCRLLHKDDVVIVKTQAPRMLDCLQKTPRKLQCDPQL
KLHCISAMETGITAVANKMNNNLGCIHLSLTSGKVTSRRRFPTKIDSFLPTGAELPPGMS
SLPGPTQKPNKTKSCKLLNKGQEYPSLLVDYNSMVYPLLGDENGGIKDPIWADIPPLFAS
GMGVHSENGSNKMHAVTVLAFRNHVLMPLVLRRDRVAFESLISSVESNQAQGWIHVFNQS
LCEEKCDGQRNLLHMCIEMTIPSSNKEQKADEKERKTRSPKPPVKFPDTSPTTRGMRCPE
PSSSRETPSGSMYMSNDDRMEAVNAIANAISLVNRSSPQSSRNQSEPVPRPAQRPASGGQ
SGEQRSDEGQPGSSDSSGRQFSSLNTFMDFYSRAHGLLGELVNPEVSPPQSPVLTWPPEL
PSYWKSVADNKDGDQSEGMNLSTSDAGKSKSSWSEFPSEMRDRGTRGDAVAILKLLCKSK
SLQPFIKTLLTLKDASGYTPFMFAVAHRAYTAAQVLFQAALDIAKDASDETNDKKEKPMI
ETLNDDDINNLMPMLYPAGSHPDDNPLYMLCCNDTCSFTWTGIQHINQDIFECLTCGLTE
SLCCCTECARVCHKGHDCKLKRTNPTAYCDCWEKCACKSLVAGDNTERTALLRTLIYTTK
LYEKPDSSGQHIMQFLIQTIARQLQEHGQYRPPNRSARITLSTSRTRVSHAKSPQQDQDW
PEHDLRPPQFCQGALLLLLDDWKSLRSLILSGCDSRRDNQCMSSQTSEDRGTFYLLPEDE
KILDNQTGTSRLDIFTHTLLVKCPNAEFVDKLLETLIHSIQTKKGKQKDESIMVARRFLR
SVIRIYIVLTAQLTPEKVVTQSTLYHQPLYKCRIAFMALLPLAAEELCETAESLIAPVRM
GVARPTTPFPLVITNSDVTNGSSTAFSRLPFPPRSGASDDEDQDQDEQQKISHHRRRKRG
RHSKRGGSRRFGSRRTQRAHEASSEVRDRSEEVTAQSSSAAANEAGNDHPDASQENEEAT
QEADTLEITQGSMANDGEPHEDSRDVNMDDEDEENEENNRGEEGVRESEERGEEEDDEDD
EDEEERESDMDLSDFELCLPDSDSESAASNETYQVTRSRRRDHESQDKDDDDSEENDEED
TDSDHWEDEVPLERQATRQLRDQARQAPHAMQWAMESNSTARIKSPNNASAASSSRATGG
LSGVTSPVMYFNSRSVGRRENLQNAYISTILDRHRALNNRAKPDEARPNSSAVTNAQLSR
LFGICMREISHLVSVLRKGDYLSEAPLSTVLEISFKESTELRNFIEQRTEATWQWLRSVV
SATEAQLRYGQVLSIASSPAHPEHPNYKRGEGKKARDVGRHSTNMSEETAARQDFLSYAL
SLMRSHTNEHSDLLPIVDVSALKHIAYVLDAYIFYLRGLSYKNTEGKKTGDSSRHSISLD
IGYDNSENDEEDDDFMNFPGDLYSVAIQQDASSTKSTEDSSSSLSQPPQSFFRRSESMDF
LGESEIPNLFEIPLPVALPLAEKPHLLQPTARKEDLFGRPRIDSSHSATSSMGLSSRVAS
VNDVNQEKEENKDQLSEESSKKKQIVAESSTLGSSNFSPVLESVESSSVDPETQSTSTSI
PGSSENNSSGVKSSIEEKEAPSTSDDPTSITDAMIDTAPDATVTVDVTTYEATSMDLTME
ENMKNNSSMQLSLSSNLMSADVVLQQSRLTLELFSKVFLEDVGAEPKSILHELGGFEVRE
SKFRKMMEKLRTGHSIDLQLNVERPRDSLIRQTFKQLNQHFKRRCGSSQPMAVVRVKVIF
KNEPGEGTGVARSFYTAICEALLSSERLPLMDGVLPGKPARMSATTMHPMLVARLYKSER
EREQRTRTGSPSSGGMGTTNLRSYLSARYRERNAGGRRVFTTSGPTPLLLSAPPYFKKSS
SRANRAYERSKQAIGERLYPKVMAIHPVWVPKITGMLLGLPAYELLLLLRSERNLYDRVH
QAASLLDEVHYDPLQDDNAGGTTTTTGRQESAAGQGSRPGSATGESRNDSKLEEKKALDK
KGEEASVNEEVDGGPPLFFQPGKRGMYAPTSWGEMTDTRLNAYRNVGRILGLCLLQNELS
PLPLCRHVLKVILNRKVNWHDLAFFDPTLYESLRQLVLDGESEDGGVLDALELTFSVDLQ
PEEGGQQVSLIPDGDAIPVTKSNVRDYVRRYALQRMLVCCKKPLEKIRQGVYDVLPKSAL
QSITAEDLRLLANGCGHVGVHTLISYTLFNDESGKNGTSAEKLTQFKRWFWSVVDRFSAV
ERQELLYFWTGSPALPASEDGFQPMPTITIRPPDDHHLPTANTCISRLYVPLYSSRKILR
HKLGIAIKTKNFGFV
NT seq
9048 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccttttgtatcgaatgttcggtttgtagttcaccccttaaccaagggtagcagg
ttgtttttagacgaagaagaaaaatttcaagaaaaattattgcgattatctgagagcaca
ttttctgcccacaacagtgatttgccacctgtgttgaaaatccttcaacagcaagtgatc
agtgactgtgctgtaggtcctaaccatctctcgttccttcttgatgatggcagagtatgc
agagtgggctatactgcaaaatctagggtcgcgcacagtgaaaaaacttctgaagattta
ccgaaagaaaaaaatcaacagaacagcagagctggaacaagaatgtgcaaatccatgcgt
acttcaagcgacccaccatgggctctgacggcggattttcttggcatgggaagttcaggt
tcgtggtcaagatggggaaatagaattggtgttgtacgctctacaacttcctcatctggc
accaccactgcagtgacgacttcagctcgtaaaacgacgagaggttctaccaactccact
agcatatcaagctccagtattcgtcttatacgaaccgggcaagtacgaggcagaaacctt
ccactgatgtctagcggtcaacgagcgatattatccgcccaagtgcctgaagatttgatt
aaccaagttcagaacgtgctgcagggaaaatctcgtaacgtgatcatacgggagttgcag
agaaccagtctcgatgtgaacctcgctgttaataatctgctgagtcgtgatgatgaggac
aatgatgacatggatgatgccggagcagattacatccatggtgaggaactgatgtcctta
tttgagggagcagtgaactccggggaccatccgagagtcgtcattgatgcagagacgatg
cttccagaggatttactcggatacacgtttccaagtcgcacctcaacccagcagcgtgga
ttgggaggttcaagtgatcgtaatgctgataaagaagagccagatgaagagagcagcaaa
caaggaagctcgaattggtcggaagccaagaactccgattcagctcaagcttcaaaacct
caaacaaaaccaatacctgggtcaagtgttgattctggattaacgctcggtagtgacatc
gagtggtggatggatggggacgaaccagtcaagtttaaattgattggagcaatgcatagt
gagcttactggtgtagaccttgagggttgtctacgtcagtggaaatggtcaagtgagaaa
ccatatcatgaaactaactttcatccaaggacggagtttctcgaacttggggaagacaag
atttcatttcttgctaccagttcgattcgagcctccgttgtaacagaaggtggcgctgtt
gctacttggatggacgagacagtatgcgcccacacagggtcactggagagtcctcggcag
ccatcggattcgttgagaaacgaaaaagttaaatctctctgtatttgcccgctttactct
gctgttcttactgaagctggtcgtgtatactggtggggtattctgccatttagtcagaga
aaaaaactgctggaaaaatcacaaaacaatttgctgcaaaacactgagaaatctgagata
tcagttggaagccaagtatgtctacgtagcttaccatcctatcatgctgggtccattgct
atcaacacttcaagtggtgaaccaagagttggccgattacttgaagtcgtgtggagtctt
gagaaaaaatgctcgtttaaaatactcagcagttcacagcaagaaaaagaaaatgaaaag
cagcttgagcccaaatctgagacgagtttgttggattcttgcaaaccaggaaagagaaaa
agagacagctctgtggataaagaagagaataaggaagaggagaatacggagcaatgggat
ttgagagaagttgtttttgtggaagatgttaaatctgttcctattggtaaagtggagaag
gtggatgggaacatagttgccgtcaacttttcatcagataaccctggcaatcgtgattcc
tcactgcaatcatgtcgcctgcttcacaaagatgatgtcgtgatcgtaaaaacacaagca
ccaaggatgctcgactgtttacagaaaacaccccgaaagttgcagtgcgatccccaacta
aagttgcattgcatcagtgctatggagacaggcataacagctgtggcaaacaagatgaac
aacaatcttggatgtattcatcttagtttgacctcaggaaaagttacaagtcgccgtaga
tttccaactaaaattgattcctttttacctactggtgctgaactgcctcctggtatgtca
agtctaccaggaccaacacagaaaccaaacaaaaccaaatcctgcaagttgctcaataaa
ggacaggagtacccatctctattagttgattacaattccatggtatacccgctgttgggg
gacgaaaatggtggaatcaaagacccaatatgggccgacatcccacctctctttgcttca
ggcatgggtgttcattcggaaaatggaagcaacaagatgcatgctgtaactgttcttgct
ttccgcaaccacgtattaatgccacttgtattacgacgagatcgtgtcgcatttgaatct
ctaatatcaagtgttgagtccaaccaagcgcaagggtggatccatgtattcaaccagagc
ttatgtgaggagaaatgtgatggccagcgtaacttactccacatgtgtattgagatgaca
atcccttcatcaaataaggagcagaaagcggatgaaaaagagaggaaaaccagatccccc
aaacctcccgttaaattcccggatacttcaccaaccaccagaggtatgagatgccctgag
ccttcaagctcaagagagacacctagtggtagtatgtacatgtcgaatgatgatcgcatg
gaagcagtgaatgcgattgcaaatgcaatctctttggttaaccgttcatctccacaatcc
agtcgcaaccagtctgaaccggttcctcgccctgctcaaaggccagctagcgggggtcaa
tcaggtgaacaaaggtcagatgaaggtcaaccggggtcgagtgattcatctggccgacaa
ttctcctcactcaacactttcatggatttttattctcgtgctcatggattgttgggtgaa
ttggtaaacccagaggttagccccccacagagccccgtattaacgtggccccctgagtta
ccctcatactggaagtctgttgctgataataaggatggtgatcaaagtgaagggatgaat
ctgtcaacatccgatgcgggaaagagcaaatcttcctggagtgagttcccatccgagatg
cgggatcgtggaacaagaggagacgcggttgccatcctgaagcttctctgcaaatcaaag
tcacttcaacctttcatcaaaactctgcttacactcaaagatgcatccggatatactccc
ttcatgtttgcagttgcccatcgtgcttacacagctgctcaagttttgttccaagctgct
cttgatattgctaaggatgcatcagatgaaacaaacgataaaaaagaaaagccaatgatt
gagacattgaatgatgatgacataaacaacctgatgccgatgctttatcctgctggttcc
caccctgatgataatccattatacatgttatgttgtaatgatacttgcagtttcacttgg
accggtattcagcacattaaccaggatatatttgaatgcttgacttgtggattaaccgaa
agtctgtgttgttgcactgaatgtgcgagggtctgccacaaaggacacgactgcaagttg
aaacgtacgaatccaactgcatattgcgactgttgggagaaatgtgcttgtaaatctctg
gttgctggtgataatactgagcgtacagctttactaaggacattaatatacaccacaaag
ttatacgaaaaaccagattcatcaggacagcatattatgcaatttctgatacaaacgata
gcgagacaacttcaagaacacggtcagtatcgacctccaaacagatcagctcggatcact
ttgtcaacctccagaaccagggtttcccatgcaaagtcacctcagcaggaccaggattgg
cctgaacatgatttacgaccgccacagttttgccagggagctctccttctgttgctggat
gattggaaatcacttcggtctctcatcctcagtggttgtgacagtcgtcgtgacaaccag
tgcatgagttcccaaacatccgaagatcgaggaacattttatcttctccctgaagatgag
aagattctggataatcagacaggcacatcacgacttgacatcttcacacacacattgctg
gtgaaatgtcccaatgctgagtttgttgataaactgcttgaaactctcatccattcaatt
caaacaaagaaaggcaaacagaaggacgaaagcatcatggttgcacggagatttctaaga
tccgtgattcgtatttacatcgtactcactgcacaactcacaccagagaaagttgtcact
cagtccacactttaccaccaaccactttataaatgcaggatcgctttcatggctttgctg
ccacttgctgctgaggaattatgcgaaacagctgaaagtttgatagcacctgttcgaatg
ggagtagctcgtccaaccacacctttcccactcgttattaccaacagtgatgtcacaaat
ggaagttcaacagcattttcaagacttcctttcccaccgagatctggagcatcagatgat
gaagatcaagatcaggatgaacagcagaagatctctcatcaccgaagacggaagcgagga
agacattcaaagaggggaggatcacgtagattcggatcaaggaggactcaaagagctcat
gaggcatcttcggaagtccgagatcgatcagaggaggtaactgcgcagtcttcctccgct
gctgctaatgaggcgggaaatgatcatccggatgcgtctcaggaaaatgaagaagcaact
caggaagccgataccttggagattacccagggttcgatggctaatgatggggagccacac
gaggacagcagagatgtgaacatggatgatgaagacgaagagaatgaagagaataaccga
ggagaggagggagtgagagaaagtgaggagcgaggagaggaggaagatgacgaggatgat
gaagatgaagaggagagagagagcgatatggatttatccgactttgagctctgtcttcca
gatagcgatagtgaatcagcagcaagcaacgagacttaccaagtcactagatcgagacgt
cgtgatcatgaatctcaagataaggatgatgatgacagtgaagagaatgatgaggaagat
acggactctgatcactgggaagatgaagttcctcttgaaaggcaagcaactcgtcagttg
cgtgatcaagcccgtcaagcccctcatgcaatgcagtgggccatggaaagcaactcaact
gcacgaattaagtcacccaataacgcaagcgcagcgtcgtcaagcagggccactgggggt
ctctctggagtcacaagccccgtgatgtatttcaattcaagatctgtcggacgtagagaa
aatttacaaaatgcttacatcagcaccatcctggatcggcatcgagctttaaacaatcga
gccaaacctgacgaagcgcgacccaactcatcagccgtgaccaacgcacaactttcccgc
ttgttcggcatctgcatgagggaaatatcccaccttgtatccgttctaaggaagggagat
tacttatctgaagccccactgtccacagtgcttgaaatctcattcaaggaatcaacagaa
ttacgaaacttcattgagcagcggacagaagccacgtggcaatggcttcgttccgtggta
tccgccacggaagcacagcttcgttacggacaggttctctcaattgcatcaagtcctgcc
caccctgaacatccaaactataaaagaggtgaggggaagaaagcaagagatgttggcagg
cacagcaccaatatgagtgaagaaactgcagcaagacaggattttttgtcttacgcttta
tcactgatgaggtcgcacacgaatgaacattccgatcttctacccatagtagatgtgagt
gcactcaagcatatagcttatgttttggatgcttacattttctaccttcgtggtttgtca
tataagaacaccgagggcaaaaaaactggcgattcatcacgacacagcatttctcttgat
attggttatgacaacagtgaaaatgatgaggaagatgacgacttcatgaactttccgggt
gatctttactctgttgcgatccaacaagatgcctcgagcactaagagcacagaagactcc
tcatcaagtctttcccaacctccgcaatctttcttccgaagatcagagtccatggacttc
ctcggggagagtgagattccaaatctcttcgagattcctctgccagttgctcttcctctt
gctgagaagcctcatcttctccaaccaactgcaaggaaggaagatctcttcggaagaccc
agaattgattcctcccactctgccacttcatccatgggtctctcctctcgtgttgcttct
gtgaatgacgtaaatcaagaaaaagaggagaacaaggatcagttatcggaggagtcatct
aagaagaaacagatcgtcgctgaatcctccactcttggctcttccaacttctctcctgtt
cttgaatcagttgaatcttcatcagtcgatccggaaactcaatccacatccaccagcatt
cctggatcatcggagaacaactcatcgggagtcaaatcctccatagaagaaaaggaagct
ccatccacatcagatgatcctacctccatcactgatgcaatgattgacacggcaccagat
gccacagtaacagttgatgtgacaacatatgaagcaacttctatggatctaactatggaa
gagaatatgaagaataattcatctatgcagttaagtttgtcaagtaacctgatgtcggct
gatgtggttctccagcaaagtcgtttaacgcttgaattgttcagtaaagtttttcttgaa
gatgttggtgcagaaccaaagtcaattcttcatgaacttggtggatttgaggttcgggaa
tcgaagttcaggaaaatgatggagaaattgcgaaccggtcattccatcgacctccagcta
aatgttgagcggccgagggattctctcatccggcaaactttcaaacagcttaaccaacat
tttaagaggagatgtggatcttcacagcctatggcagtggtcagggtaaaagttatcttc
aaaaatgaaccaggtgaagggacaggagtagctcgtagtttttacacagctatttgtgag
gctttgctctcttctgagaggttgccacttatggatggtgtgctgccgggcaagccagcg
cgcatgagtgctaccactatgcaccccatgctcgtggcgagactttataaaagtgagcgt
gaaagggaacaaagaacaaggacaggttccccttcaagtgggggtatgggcaccacaaac
ctgaggtcgtatttatctgcaaggtacagggagagaaatgccgggggtcgaagggtattc
accacttctggacccacacctctgctactctctgccccaccgtactttaaaaaatcatct
tcaagggcgaaccgagcatacgagcgcagcaaacaagcaattggtgaaagactttatcca
aaagtgatggcaatacaccctgtgtgggtgccaaagattactggaatgctcttgggcctc
ccagcctatgagctcttattgctgctaagaagtgaacgcaacctctacgaccgagttcac
caagctgcaagtcttctggatgaagtccattatgaccctttacaagatgataatgctggc
ggtaccactaccactactggcaggcaagagtcagccgctggccagggtagcaggcctggt
agcgcaacaggggaatcccgtaatgatagtaaattagaggaaaagaaagcattggataag
aagggagaggaagcatctgtgaatgaggaggtggatggaggtcctccactcttcttccag
ccaggtaaaagagggatgtacgctcctacatcatggggggagatgacagacacacgtttg
aacgcgtatcgtaacgtgggtcgtatcttggggttatgtctgctacaaaacgaactatcc
ccactaccactgtgccgacatgtgcttaaagttattctgaatagaaaagtcaactggcat
gacctcgcattttttgatccgaccttgtacgaaagtttgcgtcagttagttttggacggg
gagtctgaggacggtggtgtgttggatgcgttggaacttacattctctgtcgatcttcaa
ccagaagaaggcggtcagcaggtgtctctaatacccgacggtgacgcaattcctgtcacc
aagtccaacgtgagagattacgtgcgcaggtacgccctccagcgaatgcttgtttgctgc
aaaaagccattggaaaaaataagacaaggtgtctacgatgtgttgcccaaatctgccctg
cagtcaatcacggctgaagaccttcgcttgttggcgaacggctgcggccacgttggcgtc
catacattaatcagctacacactattcaacgacgaaagtggaaaaaatggtacatctgcc
gaaaaacttactcaattcaagcgctggttttggtcggtggttgaccgcttcagcgcagtt
gagaggcaggaacttctttatttctggaccggatcccccgctcttccagcaagcgaggat
ggatttcagcccatgcctacgatcaccatacgacctccagacgaccaccacttacctact
gccaatacttgcatatctcgcctgtatgttccactatattcatcgaggaaaattcttcgg
cacaagctcggcattgccataaagacaaagaatttcggtttcgtctga
DBGET
integrated database retrieval system
