Ciona intestinalis (yellow sea squirt): 100170045
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Entry
100170045 CDS
T01056
Symbol
zf(ubp)-4
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100170045 (zf(ubp)-4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100170045 (zf(ubp)-4)
Spliceosome [BR:
cin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
100170045 (zf(ubp)-4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
NEMP
Endopep_inhib
2B_soluble
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
100170045
NCBI-ProteinID:
XP_009861653
Ensembl:
ENSCING00000020226
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MENNGTAHVKGEKRKLEPDEETEVKKKSETSSDNLVEAYSSDDEYEHLNEPKVDRSRSCP
YLDTINRSVLDFDFEKLCSVSLSHLNVYACLVCGKYFQGRGRKSHAYTHSVECNHHVFLN
LYTLKFYCLPDNYMIVDSSLEDITYVLNPTFTKKHIKQLLNDSKLMRAYDGTTYLPGIVG
LNNIKANDYCNVILQALSHVPPLRNYFLREQNYSHIKRPPGDIMILLSQRFGELIRKLWN
PRNFKAHVSPHEMLQSIVLCSRKRFQITKQGDPLDLLTWFLNSMNVALNGSKKRTSSKFW
LGLCVMLYKEIRRKMKIYSRKIPNPETPEELKQKLLKEDEYQEKMEKSPFLYLALDLPAA
PLYKDELEHNIIPQVPLATLLAKFNGMTEKEYKGKRDSTMKRFEITRLPPYLIFYIKRFT
KNLFFIEKNPTIVNFPVTNIDLEELVAADADVPHTCYDLMANIVHDGDPNEGKGSYRVHI
LHQGSNQWYELQDLHVSDILPQMITLSEAYIQIWALRTDKSKPPAPMEV
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataatggcacagctcatgtgaagggagagaaacggaagctggaacccgacgag
gagacagaggtcaagaagaagtcggaaacatcgtcagataatttggtggaggcttactca
tcagatgatgagtacgaacatcttaacgaacccaaagtagatcggagcagaagttgtccg
taccttgatactattaatagaagtgtgttggattttgattttgagaagttgtgttctgtt
tccctctcccatttaaacgtatacgcctgcctagtgtgcgggaaatacttccagggaaga
gggcgtaaatcacacgcatacacgcacagtgttgaatgcaaccatcatgtgtttctgaac
ctctatacacttaagttctattgcttgccggacaattacatgatcgtggattcttcactg
gaagatataacgtacgtgttgaatcccactttcaccaagaaacacatcaagcaattatta
aatgactccaaactcatgcgtgcgtacgacggcacaacttatctaccaggcattgtgggt
ttgaacaatattaaagctaacgattactgtaatgtaatcttgcaggctctctcccacgtt
ccaccgttacgaaactattttttacgtgagcagaattactctcatatcaagcggccaccc
ggtgacattatgatcttactttctcagaggtttggagagttgattcgaaaactttggaac
ccgagaaatttcaaggcgcacgtttcaccacacgagatgctgcagagcattgttctttgt
tcacggaaaaggttccagataacgaaacagggcgatccacttgatctgttaacgtggttt
cttaactctatgaatgttgctttgaatgggagtaagaaacgcacaagtagtaagttttgg
ttggggttgtgtgttatgttgtataaggagattaggagaaaaatgaaaatttactcgcgg
aagattccgaatcctgaaactcctgaagaattgaaacagaagcttttaaaggaggatgaa
tatcaagagaagatggaaaaatccccgtttctatatttagcgctcgacttacccgctgct
cctctatataaagatgagttggaacacaacattataccacaagttccgctcgctactttg
cttgccaagtttaatggaatgactgagaaggaatacaaaggcaaaagggattccacaatg
aagagattcgagataacccgtcttcccccatatcttatattttacatcaaacgtttcacg
aagaatttgtttttcatcgagaaaaatccgaccattgttaacttcccagtcacgaacata
gatttagaggaattggtagcagcagatgctgacgtaccacacacatgttatgacttgatg
gcgaacatcgttcacgatggcgacccgaacgaagggaaggggtcgtacagagttcatatt
ttacaccaaggttccaaccaatggtacgaactacaagaccttcacgtgtcagatattttg
ccacaaatgatcacgttatctgaagcatatatccaaatatgggcgttgaggacagacaag
agcaaaccacccgcccccatggaagtttga
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