Ciona intestinalis (yellow sea squirt): 100170074
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Entry
100170074 CDS
T01056
Symbol
zf(c3h)-16
Name
(RefSeq) splicing factor U2AF 35 kDa subunit
KO
K12836
splicing factor U2AF 35 kDa subunit
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100170074 (zf(c3h)-16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100170074 (zf(c3h)-16)
Spliceosome [BR:
cin03041
]
Complex A
U2 snRNP components
U2 related factors
100170074 (zf(c3h)-16)
Complex B
100170074 (zf(c3h)-16)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
100170074
NCBI-ProteinID:
XP_026693470
Ensembl:
ENSCING00000004086
LinkDB
All DBs
Position
14:3675734..3676886
Genome browser
AA seq
213 aa
AA seq
DB search
MAEYLASIFGTEKDKVNCSFYFKIGACRHGERCSRLHNKPTFSQTIVLQGLYQNPQINNT
GIGTVSDVEMQEHYDNFFEEVFVELEEKYGSIEEMNVCDNLGDHLVGNVYIKFHKEEDAE
KAVNDLNNRWFNGQPIMSELSTVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRR
LYGRKEKKKRSRSPPTRNRRGGSRERHGRDRRH
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatacttagcttcaatttttggaactgaaaaggataaggtaaactgctcattc
tattttaaaatcggagcttgtcgtcacggcgagagatgctcaagactccacaacaagcca
actttcagtcaaaccattgtgttgcaaggactgtatcaaaatccacagataaacaacaca
ggaattggtactgtcagtgatgtagaaatgcaggagcattatgacaacttctttgaagaa
gttttcgtggaactggaggagaagtatggatcaattgaggaaatgaatgtgtgcgacaac
ttgggcgatcatttggtgggaaatgtttatattaagtttcacaaagaagaagatgcagaa
aaggcagtgaatgatctgaataacaggtggtttaatgggcaaccaataatgtctgagctc
agcactgtgacagattttcgtgaggcgtgctgtcggcagtatgagatgggtgaatgcaca
cgtggtggcttctgcaacttcatgcacctcaaaccaatctcaagggagctacgaaggaga
ctgtatggaagaaaagagaagaagaagagatcccgttccccgccaacgaggaacaggcga
ggaggttcgcgggagagacacggacgggatcgacgtcattaa
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