Ciona intestinalis (yellow sea squirt): 100174991
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Entry
100174991 CDS
T01056
Name
(RefSeq) paired amphipathic helix protein Sin3a isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
100174991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cin03036
]
100174991
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
100174991
REST complex
100174991
Heterochromatin formation proteins
Other heterochromatin formation proteins
100174991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
Tricorn_C1
CDT1_C
Motif
Other DBs
NCBI-GeneID:
100174991
NCBI-ProteinID:
XP_002123710
Ensembl:
ENSCING00000009117
LinkDB
All DBs
Position
2:complement(5927619..5941964)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSEIKQEDIPVTSQSQPLYSMYPQHRPIPPSSLPPQPPPVATQFHETKPEVSNTTSVSGF
PPRPNRRFNTNPFHDPSGSLSTLSAAITQHQTSTASHTFAVSTTIATPVQPIQRQTTGIT
QVLAANLVSHGQPPLSQSPQTASQLQAQQHQFQKLKVEDALSYLDQVKFQFGNQPQVYTD
FLDIMKEFKSQSIDTPGVIARVSHLFNGHPDLIVGFNTFLPPGYKIEVSANDQVSVTGPN
MIAQTIHPLGVLEPGQQSSTTIQVHTPHGKFATTLPQLPAHRASPGPNHAQLPVAPQPPF
SAPQRTPAPPTSSAPGVNTNTAASQNIPSSAVSSQQQQQQQQTTNAAGQPVEFNHAINYV
NKIKNRFQGQPDIYKAFLEILHKYQKEQRNVKDSNGSYVPLLSESEVYAQVARLFQNDSD
LLREFGQFLPDAGGAVGAVMPQSLTHAASQSSGIPSPSTKVDGIMNDHGSTVKKPPQSTS
SSKPHRSGHQSSKRPSQTNTHGQGSKRPKSCSLKDVSLAEASKHGTLGEFAFFDKVRRAL
RSSDAYENFLRCLLLYNNEVVGRAEIVQLVQPFLMKFPELFKWFKEFLGCKDNPSIEMGD
EISSPQPIKEKHEGIAMEIDYTTLKRLGSSYRALPSSFQQPTCTGRDDLCHEVLNDTWVS
FPSWSEDSQFVTSKKTPFEEHIYRCEDERYELDVVIETNLGAIRCLEGINKKLSRMSEED
KAKFHLDNYLGGTSEVTQRKAIHRIYGDKAPDVIEGLKKNPAVAVPLVLKRLKMKDDEWR
EAQHSFNKVWRNQNEKYYLKSLDHQGITFKANDTRFLRWKSLINEIETLYDERQEAVEAG
GATIASGPHITLKYEDKSIMDDAASLIIHHVKRQTGIHKDDKQKVKQVMYQVLPDLYFAP
RGNQPSDDDDDEDMDSEDTKEKNAEKSPKKSLGGYLSDDAGEGNYHLFFGNSNFYLFIRF
HHILCERLLKISRRADILSEEEIKEKKERKGEMVADMLRLRQLNDINVEDYYPAFLDMVR
NLLDGNMECSQYEDTLREMFTIHAYTAFTMDKLVQNIGKLLQHIVQDEVCVQLLDLFHKE
ELNSATGGPLVSQPRRSNIEAAYQRKAEHFAAGENCYKVTVFQKQSQLQVGVELLDTDEE
IPIDVMEVTKWSEYLEHYAAGDDVDVTSQMKERLNEKPVFLQRNANLLRRATKNEPDENN
LFITSGLEYKVAPGSYKTTFTPGTGDIMYRHSCFSNARKIQSRICVNLHKKFNDWLVRWE
HENVSRDMGRQTNNWLMGKVPGLSPQNTIMEVVTCGQLKKNLYKEEVRESTL
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaatcaaacaagaggatatccctgtgacgtcacaatcacagccattgtacagc
atgtacccccaacatagaccaatacccccttcatcactgcccccccaacccccacccgta
gcaacgcaattccacgaaaccaaaccagaagtatcgaatacaacttctgtatccgggttt
ccaccaagaccaaacagaagatttaatacgaacccatttcatgatccttctggaagcttg
agtacattaagtgcagccatcactcaacatcaaacatcaactgcttctcatacatttgct
gtttcaaccacaatcgccacacctgttcaaccaatacaaagacaaactactggtatcaca
caggttcttgctgccaacttggtaagtcatggccaaccacccctttcacaatccccacaa
acagcaagtcaactgcaggcacagcaacatcagtttcaaaaattaaaggttgaagatgct
ttgtcttatttggatcaagttaaatttcagtttgggaaccaaccacaagtctacacggat
ttccttgatataatgaaggaatttaaatcacaaagcattgacacaccaggagttatagca
agggtgtctcacttgtttaacggccatcctgatctaatcgttggtttcaacacctttcta
ccacctggctacaaaattgaggtatcagcgaatgatcaagttagcgttaccggaccgaac
atgatcgctcaaaccattcatccactaggagtgctagagcccggtcaacaatcatcaaca
acgatacaagtacacaccccgcatggtaaatttgcaaccaccttaccccaactaccagcc
catcgtgcgtcaccaggacccaaccacgcacagcttcctgtagccccccaacccccgttc
tctgccccacaacgaaccccagccccacccacctcatcagccccaggtgtcaacaccaac
acagcagcaagccaaaacatcccaagttctgctgtcagttcccaacaacaacagcaacaa
caacaaacaacaaatgctgctggtcaacctgttgaatttaaccatgcaatcaactatgtc
aacaaaatcaagaatcgcttccaaggccagccagatatatacaaagctttccttgagata
ttgcacaaatatcagaaggaacaacgtaatgttaaagactcgaatggttcttatgttcct
ctattatcagagtctgaagtctatgcacaggttgctcgtttgttccaaaatgattccgat
cttcttcgtgagtttggtcagttcctcccggatgcgggaggagcagtgggagcggtgatg
ccacaatccttgactcatgctgcaagtcaatcgtctggcatcccctccccatcaactaag
gtggatggaataatgaatgaccatggttccactgtaaagaaaccaccacagtcgacatca
tcatcgaaacctcatcggagcggtcaccagagtagcaaacgaccgagtcaaaccaacacc
catggtcagggtagcaagcggcccaaaagttgttcattaaaagatgtgagtttagctgaa
gcgtcaaaacatggaacacttggtgaatttgctttctttgataaggttaggagagcatta
agaagcagcgatgcatatgaaaacttcctcagatgtttgttgctttataataatgaagtc
gttgggagagctgagattgttcagcttgtgcaaccttttctaatgaaattcccagagctt
tttaagtggtttaaagaattcttgggttgcaaggataatccttctattgagatgggggat
gaaatatcctccccacaaccaatcaaggaaaaacatgaaggaattgccatggagatagac
tacaccaccctgaagagacttggttcaagttatagagctctaccatcaagtttccaacaa
ccaacatgtactggacgtgatgatttatgtcatgaggtgttgaacgacacgtgggtctca
ttcccttcatggagcgaagactcacagtttgttacatcgaagaaaactccgtttgaggaa
catatatatagatgtgaagatgagagatatgagctggatgttgtgatagagacgaacctt
ggagcgatccgatgcctggaaggaatcaataagaagttatcccgaatgtccgaggaggat
aaagcgaagtttcatctcgataattatcttgggggaacgtcagaggtgacacagcgcaaa
gctatccacagaatatacggagataaggcacccgatgttattgaaggattgaagaaaaac
ccagcagttgctgttcctctggtgcttaaaaggcttaaaatgaaagacgatgaatggaga
gaagctcaacattcgttcaacaaagtttggaggaatcagaacgagaaatattatcttaag
tcactcgatcaccaaggaattacattcaaagcaaacgacacaagatttctcagatggaaa
agtttaataaatgaaattgaaactttgtatgatgagagacaagaagcagttgaagcgggt
ggagccaccatagcaagtggacctcacataacattgaaatatgaagataaatcaataatg
gatgacgctgcttcacttattattcatcatgttaaaagacaaactggcatccataaagat
gacaaacagaaagtaaagcaagtaatgtaccaagtccttcctgatctttattttgctcca
cgaggaaaccaacctagtgatgatgatgatgatgaggatatggacagtgaagacacgaaa
gagaaaaatgctgaaaaaagtccaaagaagtctctcggtggatacttaagtgatgatgca
ggggaaggaaattatcatttgtttttcgggaattcaaacttttatctctttattcgattc
caccacatattatgtgaacggttgctcaaaatatcaaggcgagcagatattttgtctgaa
gaagaaataaaagaaaagaaagaaaggaaaggagagatggtcgctgacatgctgaggctg
cgacaactaaatgacattaatgtagaagattattatcctgctttcctggatatggttcgt
aacttgttggatggaaacatggaatgttcgcaatatgaagatacattaagggagatgttc
accattcatgcttacactgctttcaccatggataaactggtgcagaatatcggaaaactg
cttcaacatattgtccaagatgaggtttgcgttcaacttcttgatttgttccataaagaa
gagctaaactccgccaccggagggcctctcgtgtcacagcctcgtagatcgaacatagaa
gcagcatatcaacgtaaagctgagcattttgctgctggtgaaaactgctacaaagttact
gtgtttcagaagcaatcccagcttcaagtaggagttgagttgctcgatacagatgaggag
attcccattgatgtgatggaggtaacgaagtggagcgagtaccttgaacattacgctgct
ggtgatgatgtggatgtcacttctcagatgaaggaacgacttaatgagaagccagtgttt
ttgcagaggaacgcaaacttattgcgaagagcaactaaaaatgaaccagatgaaaataat
ttgttcattacaagtggattggaatacaaggtggctcctggttcatataaaactacattc
acacctggaactggagatattatgtataggcattcatgttttagtaatgctagaaagata
caatcacggatttgcgtgaatcttcacaagaaatttaatgattggcttgtgagatgggag
catgagaacgtatcacgggatatgggaaggcagacaaacaactggttgatgggaaaagtg
ccaggcttatcaccacaaaacacaatcatggaagttgtaacttgtggacagctgaaaaag
aatctttataaagaagaagtgagggaatcaaccttgtaa
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integrated database retrieval system
