Ciona intestinalis (yellow sea squirt): 100175056
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Entry
100175056 CDS
T01056
Name
(RefSeq) WASH complex subunit 5 isoform X1
KO
K18464
WASH complex subunit strumpellin
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
100175056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100175056
Membrane trafficking [BR:
cin04131
]
Protein recycling
Others
WASH complex
100175056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Strumpellin
Stap_Strp_toxin
RSF
Motif
Other DBs
NCBI-GeneID:
100175056
NCBI-ProteinID:
XP_018671591
Ensembl:
ENSCING00000020969
LinkDB
All DBs
Position
1:complement(8469034..8493569)
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AA seq
1164 aa
AA seq
DB search
MAQDFLADNNLCGQTILRLVSRGNAVIAELLRLSDFIPSVFKLESKAEQLKYGSIVSDFS
YFRGIEYYENKIDQSTQLQDIDEEFRENNLPILTRFYLAFESIHKYVVDLNRFLEELNEG
VYIQQTLESVLINQDGKQLMCEALFLYGVMLLTIDMKIEGLIRERMLVSYYRYSGAARGA
GSDSNIDDVCKLLRSTGYSNTLGSKRPPNYPEAYFARVNVNPVFVSMVLGRLRSDDVYSQ
VSAYPLPEHRSTALATQASMLYVCLYFDPDILHTQQAKMREIVDKFFPDNWVISVYMGTI
VNLIEAWEPYKAAKVALQNTLEVGNCKQHAVKHARQLQKSFKDVDHFLKEGVLTSDYMLD
NIPRLMNCLRECNVCIRWLMLHSIVTGSELIKKCKQLRELVLTTTTVKQANIFQLLLHTA
QLELKLKEMFKKMLADKEMTWDRCKKEGVERMDELAEVFSGSKPLTRIEKNDQLKSWFEQ
MSRQISSLDYSDSTSAGRKMVQLMQALEEVQEFHQLENNLQVRQFLADTRGFLHQMIRTV
NIQEEVLITLEIIADLSYAWMVMDQNYTSNMQEGIKRTPSLVIKLRSTFLKLASTLELPL
LRINQANSSDLISVSQYYSGELVAYVRKVLQIIPQTMFGLLARIVKIQTTQIHELPTRLE
KDKMREYAQLDARYEVAKLTHGISVFTEGVLMMKTTLVGIIKIDPKQLLEDGIRKELVMQ
VAHAMHKMLIFNPKAKTSELFPKLQTLSQTMDAYRRSFEYIQDYVDIYGLKIWQKEMLRI
INYNVEQECNSFLRQKIQDYESLYQSKDIPVPRFPPVDGSVNFIGRLARETLRITDGRTT
SYVDLLGTWYDVKTKVEVADTKLFTRIQEALGVYGLSGLDRLFSFMVVRELQQFIMMVQH
SVLKDKAWIDVLGSVHKTITPHRDVLENPSKIFNSVNQRANKVWPTFIEAAMRIGQIQLI
RRQIGNELNFSCKFESKSLASGVYTMNKALLTAVEAHYKDPEKPYPNDDSMMFELTSFID
GMGMGEVMKKIYITTKRLSHFSLLCFLFTITQLQKLQYSKPLCGLVCKKVNDSVDAPPFI
IGMLTLLQQFHANETQKFIEMLGQYLRSCIAASSGSSNRTSDLPPEAINVAAFLEEFVFY
GNIKRKMVEGHVPAYILDDFRRGF
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggactttttagctgataataatctatgtgggcaaactatactacgtttagta
agcagaggtaacgcagtaattgcagaacttctacgattgtcggatttcattccctctgtg
tttaaactggaaagcaaagctgagcaacttaaatacggttctattgtctctgactttagt
tactttcgtggcatcgaatattacgaaaacaagatagaccaaagcacgcagctgcaagat
atagacgaagagttccgtgaaaataatctcccgatattaacgaggttctatctggcattt
gaaagcattcataaatatgtggtggatttgaatagattcttggaagaattaaatgaaggg
gtttatattcaacagacgttggaatctgtgctgatcaaccaggatggtaaacaactgatg
tgtgaagcgttgttcctttatggggtgatgctccttaccattgatatgaagattgaagga
ttaataagagagagaatgttggtgtcttattatagatacagtggggcagccagaggtgcg
ggatccgacagcaacatcgatgatgtttgcaaactgttaaggtctactggttactccaac
acccttggttctaagcgacccccgaactaccccgaggcttactttgcgagggtgaatgtg
aaccctgtatttgtgagcatggtgcttggaaggctaaggtcggatgatgtgtatagtcag
gtgtcggcataccccctcccagagcaccgaagtactgcccttgccacccaagcctcaatg
ttgtatgtgtgtttgtattttgatccagacatactacacacacaacaagctaaaatgagg
gaaatcgtggacaaattcttccctgataattgggtgatcagtgtatacatgggtaccata
gtcaaccttatagaggcatgggaaccttacaaagcagccaaggttgccctgcagaataca
ctggaagtgggaaactgtaagcaacatgcagtgaaacatgcacggcaacttcaaaagtcg
tttaaagacgtcgaccattttcttaaagaaggtgttctaacatcggactatatgttggat
aatataccaaggctgatgaactgtcttcgcgaatgcaatgtctgcataagatggttaatg
ctacactctattgtaacaggtagcgaattgataaagaaatgcaaacaactccgtgaactt
gtactgaccactaccactgttaaacaagccaatatatttcaattgctacttcatacagct
cagttggaacttaaattaaaagagatgttcaagaagatgttggctgacaaggagatgact
tgggatcgttgtaagaaggaaggagttgaaagaatggacgaactcgctgaagttttctcg
ggttccaaacctcttacaaggatagagaagaatgaccaactgaagtcgtggttcgagcag
atgtcacgtcaaatatcctcgctcgattattctgactctacctccgctggtaggaagatg
gtgcaactgatgcaagcattggaggaggtacaggagtttcatcaactggaaaataatcta
caggttcgtcagtttctcgctgacacccgaggattcctacatcagatgataaggaccgtc
aacatccaggaggaagtcctcatcactctagagatcatcgccgatttatcttacgcgtgg
atggtgatggatcaaaattataccagcaacatgcaagaagggatcaaacggactccatct
ttggtcattaaactgagatcaactttcctcaagcttgcgtcaacattggaattgccattg
ttgagaattaatcaggctaacagtagtgaccttatcagtgtctctcagtattattctggg
gaattggtggcttatgttagaaaggtgctccagattataccccaaacaatgtttggactt
ctggcacgcatcgttaaaatacaaaccacacaaatacatgaacttcccacaaggttggag
aaagataagatgagagaatatgcacagcttgatgcaagatatgaggttgccaagttaacg
cacggaatctcagtgttcactgaaggcgtactgatgatgaaaactacattggttggaatt
attaaaatcgatccgaaacaattgcttgaagatggcatacgtaaggagctggttatgcag
gttgctcatgctatgcataagatgctcatatttaaccctaaagctaagacaagtgaattg
tttccaaaacttcaaactttatcgcaaaccatggatgcttacaggagatcattcgaatat
atacaggattatgttgatatttatggattgaagatttggcaaaaggagatgcttcgtatt
ataaactacaatgtagagcaggaatgtaacagttttttgcgccaaaagatccaagattac
gagagtttatatcaatccaaagatatcccggtaccccggtttccccccgttgatggatcc
gttaatttcatcggtcgtctcgctagggaaacattaagaataactgacggaagaacaaca
tcgtatgttgatttgttgggaacttggtatgatgtgaaaactaaagttgaagttgctgat
accaagctgtttacaaggatccaggaagcacttggtgtgtatgggttgtctggattagat
cgcttgttcagtttcatggttgttcgtgaactacagcagttcattatgatggtacaacac
agtgtgttgaaggacaaagcatggatagatgtgttgggttccgtgcataaaactataact
cctcaccgcgatgtattagaaaatccgtccaagatatttaacagcgtgaaccagcgtgca
aataaggtgtggccgacttttatcgaagcagccatgcgtatcggacaaattcaacttatt
cgtcgacaaattggaaacgaacttaacttctcgtgcaagttcgaatccaagtcactcgca
tccggtgtttatacgatgaacaaggcgttactcacagcagttgaagctcactacaaagac
cccgagaaaccgtaccccaacgatgactccatgatgtttgaactaacttcatttattgac
gggatggggatgggagaagttatgaagaagatttatattactactaagcgattgtctcac
ttctccctcctttgtttcctcttcacaataactcaactacagaagttacaatacagcaaa
ccactttgtggattggtctgcaaaaaagtgaacgactcagtcgacgcccctccctttatt
atcgggatgctgactttgcttcaacaatttcatgcgaacgaaacgcagaaattcatagaa
atgttaggacaatatctgcgttcgtgcattgccgcctctagtggcagcagcaacagaaca
agtgacctcccacctgaagcaatcaacgtggccgcttttcttgaggagtttgtgttttat
ggaaatattaaacgaaagatggtggaaggccacgtacctgcttatattctggacgatttt
cgccgaggtttctag
DBGET
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