Ciona intestinalis (yellow sea squirt): 100175060
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Entry
100175060 CDS
T01056
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03082
ATP-dependent chromatin remodeling
cin03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100175060
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100175060
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cin01009
]
100175060
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100175060
03036 Chromosome and associated proteins [BR:
cin03036
]
100175060
Protein phosphatases and associated proteins [BR:
cin01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100175060
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100175060
SWI/SNF complex
100175060
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100175060
PBAF complex
100175060
SWI/SNF complex
100175060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
Motif
Other DBs
NCBI-GeneID:
100175060
NCBI-ProteinID:
XP_026690146
Ensembl:
ENSCING00000009008
LinkDB
All DBs
Position
4:485393..489644
Genome browser
AA seq
378 aa
AA seq
DB search
MSKTNETTTPRTFGQKPAKFQLEEGGEFYMIGSEVGNYLRLFRGSLYKRYPSLWRRMATT
EERKLIASRSPDIGHSSLATNVSLLKASEVEDVYQGNDEKYRAATLSTTADIAAREANKQ
KRSSQWVPTLPNSSHHLDAVPCATSITHIPQSKKKIRTFPFCYDDRRPAAIHSNAAQPEV
LVPIRLDMEVDGQKLRDTFCWNKNEQLITPEMFAEVLCDDLDLNALTFVPLIAQAIRTQI
EAFPLETNILSGQTDQRVILKLNIHVGNISLVDQFEWDMSEPSNSPEEFAAKLCQELGLG
GEFVTAIAYSIRGQLSWHQRTYAFSENPLPSVDIALRNTGEADQWCPFLESLTDAEMEKK
IRDQDRNTRRMRRLAAAW
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagactaatgaaactaccaccccgcgtacgtttggtcaaaaacccgccaagttt
caactagaagaaggtggcgaattttatatgattggatctgaggttggcaattatcttcgt
ttattccgtggctccttatacaaacgatacccatcattatggaggcgtatggcaacaaca
gaagagagaaaactaattgcctcacgctctccagatatcggacatagtagtcttgcaact
aatgtttctttgctgaaagcaagtgaagtcgaagacgtgtaccaaggtaatgatgaaaaa
tatcgtgctgcaactttatcaactacagcagacatagctgcaagagaagcaaacaaacaa
aagcgcagcagtcagtgggttccaactttacctaatagttcacaccatcttgatgcagtg
ccttgtgcaacatctattacacatattccgcaatccaagaaaaaaattcgcacttttcca
ttttgttatgatgatcgtcgacccgcagctattcacagcaatgcagctcaaccagaagtg
ttggttccaatacgcctcgatatggaagtggatggccagaaattaagagatacattttgt
tggaataaaaatgaacaactgataacaccagaaatgtttgctgaagttttatgcgatgat
ttagatttgaatgcactcacattcgtaccacttattgcacaagcaatacgaacacaaatt
gaagcttttcctttagaaacaaacatactatcaggacaaactgatcagcgggttatctta
aaactgaacattcatgtcggcaacatcagtttagttgaccaatttgaatgggacatgtca
gaaccaagtaacagtccagaagaatttgctgcaaagctttgccaagagcttggactagga
ggggaatttgtgacagctatagcttacagtatccgtggccaattaagctggcatcaaagg
acatatgcatttagtgagaatccacttccatctgttgacattgcattgagaaacactggt
gaagctgaccagtggtgtccgttccttgaatctctaactgatgcggagatggagaagaag
ataagagatcaagatagaaacacaaggagaatgagacgactagctgctgcctggtga
DBGET
integrated database retrieval system
