Ciona intestinalis (yellow sea squirt): 100175083
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Entry
100175083 CDS
T01056
Name
(RefSeq) transcription initiation factor TFIID subunit 3
KO
K14650
transcription initiation factor TFIID subunit 3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100175083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100175083
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
100175083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromo_TP
PHD
Dodecin
PHD_2
PHD_5
PHDvar_NSD
HscB_4_cys
Motif
Other DBs
NCBI-GeneID:
100175083
NCBI-ProteinID:
XP_002126955
LinkDB
All DBs
Position
1:complement(3007404..3020530)
Genome browser
AA seq
850 aa
AA seq
DB search
MADVFSKGVLKIVVAQLTQAVGFDSLQLGTLEVLTDLLERFLLTTGRTAHDLSEKCGRTN
VMTGDIEHCFNLLHISPREIIDYVQQMDQVQFPSKVAKFPIPKSSNFQFQSIHESSDSDI
PSYFPSLKQSAAEEKPLNTSDQRSRSPLFTIAGKDASSDESAADGYASDGSSTHNAELRY
LTNPEDIPVVSGTAASSSPSSLSTTDYHPFKREVAVTPPEIPNKLTENIRPKPHNTKQSL
SKNDEPLWVKQHAARMEHQTPKSSKSFIKSTSTPVFPNRDSGKPIKHETPAPKVSPWDSP
LFSNPKLLSSKSSDSFKKSTPKDKFRGDFSEKTSKPKKTSITSRIAEVDKLLHDPLVVKE
EPTPPSKVKLEKSPMSPHYNLLRAAELTKTPIEAPSSNNSALFASPKSMDDAIDAVVHRA
SKEVEEAELMKFSHLVKDSSSSGEDFDVEVSHKTEELLQLEQRGFHHHHDEESPVRPPLT
PSPAPSNTSMIIDQDIDFNPGNKSTYRDKVPSLLVHTPEPQSERKHSVSSHSSVVSHDFH
DEPHDIYDSPHRKHSREIQSSHTSYSPPHHKKSKKDRKDKDYNKVKSLKKSKHKDKEKKR
STSHEQHKLDLKSKSVEKLVLKKSKFIAPKVKPVVKEREVVSCSFQRERLPLPKLSAEIP
APLIINKDKKKEKKEKKKKKEKEIKLMKHTKEEVTPIPKLTFKMTTSDKKVSIVKPSKHK
RTPSLDEDESDFNDDLDDEDLYPPPPKKKAPEVKKEQKPVERKLITQTISVGHAVGVVLD
DDGNRVWICPGCNKPDDGSPMIGCDKCDDWYHWPCVGIIQEPPENEEWFCPNCRKAQKQK
GKKKIKTKHR
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtatttagcaagggcgttttaaagatagtggtagctcaactgactcaggct
gttggattcgattccttacaacttggtactttagaagtattgacagatctcttggaaagg
tttcttctcacaactggacggactgctcatgacctgagtgaaaaatgtggcagaaccaat
gtaatgacgggcgacatcgaacactgcttcaacttgcttcatatttcaccacgtgagata
attgactatgttcaacaaatggaccaagtgcaattcccgtcaaaagttgcaaaatttccc
attccaaagtcgtccaatttccagttccagtctatccatgaatcgagtgattcagatata
ccaagttattttccctctttaaaacagtcagcagcagaagaaaagccactaaacacatca
gaccaaaggtctcggagtcctctttttacaattgctggtaaagatgcttcatctgatgaa
agcgcggcagatggatatgcttccgatggttcatccactcataatgcagaattgagatac
cttaccaaccctgaagacatccctgtagtgagtggaacagcagcttcaagttctccatct
tcactaagcacaacagactatcatccattcaaacgtgaagttgctgtcacgcctccagag
attccaaacaaacttacagaaaacatccggcccaagccacacaacaccaagcagtcatta
agtaaaaatgacgaacccctttgggttaaacagcacgcagcaaggatggagcaccagact
ccaaaatcatcaaaaagtttcatcaagtccaccagtacacctgtgtttccgaacagagac
agtggaaagccaataaaacatgaaactcctgctccaaaggtgtctccctgggactcgcct
ctattttcaaacccaaaactgctttcttccaaaagttcagactcgtttaaaaagagcacg
ccaaaggataaatttcggggcgatttttcggaaaaaacttcaaagccaaaaaaaacttct
attacatcaaggatagctgaggtggataaacttttacacgaccccctggttgttaaagaa
gaacctacaccgccatccaaggtcaaactagaaaagtcacccatgagcccccactataac
ctgctacgagctgctgagttgactaagacaccgatagaagctccgagttcaaataattca
gctttatttgcttctccaaaatccatggatgatgcaattgatgctgttgtacatcgagca
tcaaaagaagtggaagaagcagaacttatgaagttttcgcatctagtgaaggactcgagc
agttctggtgaggatttcgatgtggaagtttcacataaaacagaggagttgttgcagttg
gaacagcgaggtttccaccaccatcatgatgaagaatctcccgttcgtccccccctgacc
ccctcacctgccccatctaatacctccatgataatagaccaagatattgactttaaccct
ggaaataaatctacatacagagataaagttccatcattgcttgtccacacaccagaacca
caaagtgaacgaaagcacagtgtgtcttctcacagctcagtggtgtcacatgattttcac
gatgaacctcatgatatttatgattcccctcataggaaacattcacgtgaaatacaaagt
tctcacactagctacagccctccacatcataagaaatctaagaaagaccgtaaagacaaa
gattacaacaaagttaaatctctcaagaaatcaaagcataaggataaagaaaagaaacgt
tcaacatcacacgaacaacacaaactcgatttgaagtcaaagtcagttgaaaaacttgtg
ctcaaaaaatcaaagtttattgcacctaaagtaaagcctgttgtgaaagagagagaggta
gtttcatgttcctttcaacgtgagagacttccactgcccaagctttctgctgaaatacct
gcccctctcattattaacaaggataaaaagaaggagaaaaaagagaaaaagaagaaaaag
gaaaaagaaataaaactaatgaaacatacaaaggaagaagtcaccccaatacccaagtta
acgtttaaaatgacaaccagtgacaagaaagtgagtatagtgaagccatctaaacataag
aggacaccatccttagatgaagacgaaagtgactttaatgatgacttggatgatgaagat
ctgtaccctccaccgccaaagaaaaaagctccggaagttaaaaaagagcaaaaaccagtg
gaaagaaaactgatcactcaaaccatcagtgttggtcatgcagttggtgttgtacttgat
gacgatggaaacagggtttggatttgccctggttgcaataaacctgatgacggtagtcct
atgataggctgtgataaatgtgatgattggtatcattggccgtgcgttggcatcatacaa
gaaccgcctgaaaatgaagaatggttttgtccgaactgcagaaaagctcaaaagcagaag
ggaaagaaaaagattaaaacaaaacatagataa
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