Ciona intestinalis (yellow sea squirt): 100175132
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Entry
100175132 CDS
T01056
Name
(RefSeq) THO complex subunit 4-like
KO
K12881
THO complex subunit 4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03013
Nucleocytoplasmic transport
cin03015
mRNA surveillance pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100175132
09122 Translation
03013 Nucleocytoplasmic transport
100175132
03015 mRNA surveillance pathway
100175132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100175132
03041 Spliceosome [BR:
cin03041
]
100175132
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100175132
TREX complex
100175132
Spliceosome [BR:
cin03041
]
Complex C
Other components
EJC/TREX
100175132
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100175132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FoP_duplication
RRM_1
Motif
Other DBs
NCBI-GeneID:
100175132
NCBI-ProteinID:
XP_002131960
Ensembl:
ENSCING00000013568
LinkDB
All DBs
Position
4:2472540..2474430
Genome browser
AA seq
257 aa
AA seq
DB search
MADKLDLSLDDIIKINKKTKTGGGRGRGGRRGGRGGGGATGGGVGQARNKRGGGRGRGRG
NPRQSYTRGKMPADRWEHDMYKNGKPGRGRARGAGTMETRSTGGIGKLLVTNLDFAVSDS
DITELFSEFGALRKSAVHYDRSGRSLGSADVHFERRSDAARALKQYNDVPLDGRVMQIRF
VDGNSPSNDMNGRIGQRKPAPSGGGGGGRGRGGQPKRGGFRGRGRGRGGGRGREPKKEVS
AEELDKQLDDYISKMEE
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaagctagatttatcccttgacgacattatcaagatcaacaagaaaacaaaa
accggcggtggacggggaagaggcggtcgccgtggtggaagaggtggtggcggcgctact
ggcggaggtgttggtcaggcccgcaacaaacgaggtggaggaagaggtcgcggacgtgga
aaccccaggcaatcctacacaagaggaaaaatgccagccgacaggtgggagcatgacatg
tacaagaacgggaagcccggaagggggcgtgcacgtggtgcagggaccatggaaacaaga
tcaactggaggaattggaaaactgctggtgacgaatcttgattttgccgtgtctgatagc
gatatcaccgaattgttctcggaattcggtgctctgcgcaaatcagctgttcattatgat
cggtcgggcaggtcactagggtcggcagatgtccattttgaaagaaggagtgatgcagca
agggcactgaagcaatacaatgatgtaccacttgatgggcgagtcatgcaaattagattt
gtcgatggaaattctccttctaatgacatgaatggccgtattggtcaaaggaaaccagca
cccagtggtggtggtggcggcggaagaggccgtggtggacaacctaaaagaggaggtttc
agaggcagaggccgcgggcgtggtggtggacgtggccgagagccaaaaaaagaggtttcg
gctgaagaacttgacaaacaacttgatgactacatttctaagatggaggaatga
DBGET
integrated database retrieval system