KEGG   Ciona intestinalis (yellow sea squirt): 100175132
Entry
100175132         CDS       T01056                                 
Name
(RefSeq) THO complex subunit 4-like
  KO
K12881  THO complex subunit 4
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03013  Nucleocytoplasmic transport
cin03015  mRNA surveillance pathway
cin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100175132
  09122 Translation
   03013 Nucleocytoplasmic transport
    100175132
   03015 mRNA surveillance pathway
    100175132
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cin03019]
    100175132
   03041 Spliceosome [BR:cin03041]
    100175132
Messenger RNA biogenesis [BR:cin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100175132
    TREX complex
     100175132
Spliceosome [BR:cin03041]
 Complex C
  Other components
   EJC/TREX
    100175132
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100175132
SSDB
Motif
Pfam: FoP_duplication RRM_1
Other DBs
NCBI-GeneID: 100175132
NCBI-ProteinID: XP_002131960
Ensembl: ENSCING00000013568
LinkDB
Position
4:2472540..2474430
AA seq 257 aa
MADKLDLSLDDIIKINKKTKTGGGRGRGGRRGGRGGGGATGGGVGQARNKRGGGRGRGRG
NPRQSYTRGKMPADRWEHDMYKNGKPGRGRARGAGTMETRSTGGIGKLLVTNLDFAVSDS
DITELFSEFGALRKSAVHYDRSGRSLGSADVHFERRSDAARALKQYNDVPLDGRVMQIRF
VDGNSPSNDMNGRIGQRKPAPSGGGGGGRGRGGQPKRGGFRGRGRGRGGGRGREPKKEVS
AEELDKQLDDYISKMEE
NT seq 774 nt   +upstreamnt  +downstreamnt
atggcagacaagctagatttatcccttgacgacattatcaagatcaacaagaaaacaaaa
accggcggtggacggggaagaggcggtcgccgtggtggaagaggtggtggcggcgctact
ggcggaggtgttggtcaggcccgcaacaaacgaggtggaggaagaggtcgcggacgtgga
aaccccaggcaatcctacacaagaggaaaaatgccagccgacaggtgggagcatgacatg
tacaagaacgggaagcccggaagggggcgtgcacgtggtgcagggaccatggaaacaaga
tcaactggaggaattggaaaactgctggtgacgaatcttgattttgccgtgtctgatagc
gatatcaccgaattgttctcggaattcggtgctctgcgcaaatcagctgttcattatgat
cggtcgggcaggtcactagggtcggcagatgtccattttgaaagaaggagtgatgcagca
agggcactgaagcaatacaatgatgtaccacttgatgggcgagtcatgcaaattagattt
gtcgatggaaattctccttctaatgacatgaatggccgtattggtcaaaggaaaccagca
cccagtggtggtggtggcggcggaagaggccgtggtggacaacctaaaagaggaggtttc
agaggcagaggccgcgggcgtggtggtggacgtggccgagagccaaaaaaagaggtttcg
gctgaagaacttgacaaacaacttgatgactacatttctaagatggaggaatga

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