Ciona intestinalis (yellow sea squirt): 100175139
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Entry
100175139 CDS
T01056
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100175139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100175139
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100175139
mRNA degradation factors
5'-3' decay
Decapping complex
100175139
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Claudin_TMEM179-179B
Motif
Other DBs
NCBI-GeneID:
100175139
NCBI-ProteinID:
XP_002127239
LinkDB
All DBs
Position
3
Genome browser
AA seq
894 aa
AA seq
DB search
MSDVYLQHISSTPGAGMDNYQNNEASFGQDNIDLLNEDTFGAGAVEEDWELDHNQLVGLH
EGVLGRKQEINSNIESENNNQVDDLQPFTFESLHSPLQLDDEELERSNQQLAAAVEELVL
NSDQDQDMIDPAIVSLRRQPQSVHLAASPKLPPFYSREDEGPRFNNSNVSNIFNRPDNLY
TSDNLRNIWNESSLGQSILSASLTLPVDNKPINDNGNLQFEDEAILSISRDTSDFDRPSL
LSSPLVVSAEDLEREMQGTSSPRGPSPTYGISIPSNNNHDPVDRSLPPRSVSPLFGSPSP
SNMPIGTPPKHVIMNMMHHLEQQQQTHPPPPHPNLINTSGSSGSLPHPPLKFPPGLPPPR
LPPFIRGPPPIINSGMPIGVPQPRNVVWPNQQPMNPLIAQDIMNRLGMRPPTPQPNHPSP
IGSPRAFMVPPPRLMSNPRQMHLPPGGVRPVPRRQMPGFNNERFMHPMPAPQFGPGHLHP
EHSKYVRMRQQRYGGHDSMGRSRNYKRHQYEERIGIPGDPYANIMNQKEKDWVIRIQMMA
LQSDRPEIDDYYYQNYIERRLREGRLNSDQSKPARLITPTKPNLENRKYVPVQFSNSLGK
LTTSSVYNPRQIIDIVQTANQDEETAGDAADTRQALSKRLVVYKTIEKAYEIIVLMEELQ
AQIQLCPPNASARRSLGDHLQSKTRQMLDVLDLHDGMAFDLHDDPIFQVMKIRKGKKLIG
RTLHFLPQTHAVTVIQSIFSHFAILIKRDARDGVLHELYVPISSVLSSLDRAKFIQLCSL
LSTFAITAAVKDQVGVSIICKLLHEGSAQFNSCEDSEKQEWFKFVSNVSDIIVAVANPKE
GSRHARPTTPSPLLENFPYHVFEVLSSQPTEKNSSEKIKSSVEQLISKKSFEIK
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgtatacttacaacatatttcttcaacacctggtgctggtatggacaattat
cagaataacgaagcaagttttggtcaagataatattgacttgctaaatgaggatacattt
ggagctggagccgttgaggaagattgggaacttgatcataatcaattagttggtttacat
gaaggtgtgcttggtagaaagcaagaaataaatagtaacatagaatctgaaaacaacaac
caagttgatgaccttcaaccgtttactttcgaatctcttcattctccgctccaattggac
gatgaggaacttgaacggtccaatcagcagctagcagcagctgtggaggaacttgtacta
aacagtgaccaggatcaagacatgatcgacccggcgattgtcagtttacggcgacaaccc
cagtcagttcatctcgctgcaagcccaaagttgccacctttttactcacgtgaggatgaa
ggtccaagattcaacaactcaaatgtttccaacatatttaaccgaccagataatctttat
acttcggataatttgcgaaatatttggaatgagtcatctttaggccaaagcattctttct
gcttcactcactttaccagtggataacaaaccaattaacgacaacggaaatttacaattt
gaggacgaagctatattatccatttcacgtgatacatctgactttgaccgaccgtctctg
ctctcaagtccacttgtagtttcggctgaagacttagagcgagaaatgcaaggaacatcc
tctcctagaggaccttcccccacatatggcatcagcatcccaagtaacaacaaccatgat
cccgtagatagatccttgcctccacgatctgtttcaccattatttggaagtccatcccca
tcgaatatgccgataggaactcctccaaaacatgttatcatgaacatgatgcatcatctt
gaacagcaacaacaaacacaccctcctcctcctcatccaaaccttatcaatacatccgga
tcatcaggatctcttccccatcctccactcaagtttcctcccggacttccacctccaaga
ctcccccctttcatccggggtccgccacctattataaacagtggaatgcctatcggggtc
ccacaaccccgaaatgtggtctggccaaaccaacaaccaatgaatccactaattgctcag
gatataatgaacagacttggcatgcgaccccccaccccacagcccaaccatccaagtccc
attgggtcacctcgtgcgtttatggttccacccccgcgcttgatgagcaacccgcgccaa
atgcacctcccaccgggtggggtaagacccgtgccgagacgacaaatgccaggcttcaat
aatgaaagattcatgcacccgatgcctgccccacaatttggccctggtcatcttcatcct
gagcacagcaagtatgtccggatgcgacaacagagatatggaggacatgatagcatggga
agatcaaggaattataagagacatcaatatgaggagaggatcggaatacccggagatccg
tacgcgaacatcatgaaccagaaggagaaggattgggtcatcaggatccagatgatggcg
ctacagagtgatcgaccagaaattgatgattattattatcagaattacattgagcgtaga
ttaagagagggaagattaaacagcgatcaatcgaaacctgctcgtcttattacaccaacc
aaacccaacttggaaaaccggaaatatgttccagttcaattctccaactcacttggcaaa
ctcacaacatcaagcgtctacaacccacgacaaataatcgacattgttcaaactgcaaac
caagatgaagaaactgctggggatgctgctgatacaagacaagcattgagcaagagactt
gttgtatacaaaacaattgaaaaggcatatgagatcattgtactaatggaagaattacaa
gctcaaatccaactctgcccacccaacgcaagcgcaaggagaagcttgggcgatcatctt
caatcgaagacgagacagatgctcgatgtcctcgacctccatgatgggatggcgttcgat
cttcacgatgatcctatcttccaagtgatgaagatcaggaagggaaagaaattaattgga
agaactctccatttcttgccacaaacacatgctgtaactgtgattcaatcaattttctca
cactttgcaatattgatcaaacgtgatgcaagagatggggttctacacgagttatacgtc
cccatcagctctgttctctcatctcttgaccgagcaaaattcattcaactttgttcactt
ctctcaacatttgccatcactgcagcagtcaaggaccaagttggagtgtcaatcatatgc
aagcttttgcatgaaggaagtgctcagtttaattcatgtgaagattcagaaaagcaggaa
tggtttaaatttgtctccaatgtgtcggacatcatagttgcagtcgcgaacccaaaagaa
ggttctcgccatgcccgcccaaccactccctccccactgctggagaactttccgtatcat
gtatttgaggtcctatctagccaacccactgagaaaaactcatcggaaaaaatcaagtcg
tcagtagagcagttaatttcgaaaaagagttttgaaattaaatga
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