Ciona intestinalis (yellow sea squirt): 100175227
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Entry
100175227 CDS
T01056
Name
(RefSeq) coatomer subunit beta-like isoform X1
KO
K17301
coatomer subunit beta
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100175227
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cin04147
]
100175227
Membrane trafficking [BR:
cin04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
100175227
Exosome [BR:
cin04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
100175227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatamer_beta_C
Coatomer_b_Cpla
Cnd1
HEAT
HEAT_2
HEAT_EZ
Coatomer_g_Cpla
pP_pnuc_1
Motif
Other DBs
NCBI-GeneID:
100175227
NCBI-ProteinID:
XP_002131807
Ensembl:
ENSCING00000002213
LinkDB
All DBs
Position
14:2288678..2303412
Genome browser
AA seq
964 aa
AA seq
DB search
MTSAESICYTLINSSSITDEPTNETNLKNEIEHGDVRTKTDALKKVILMTLNGEKLQGLL
MTIIKYLLPSDDHTIKKLLLIFWEIWPKTDNEGKLRPEMILVCDAYRKDLQHPNEFIRGS
TLRFLCKLRQPELIEPLMPAIRSCLEHRHSYVRRNAVLAIYTIYRKFDQLIPDAPELIHE
FLEGEKDASCKRNAFMMLIHADQERALDYLSTCIDQVNTFNDILQLVIVELVYKVCHANP
NERARFIRCIYNLLQSSSQAVRYEAAGTLVTLSNAPTAVRAAAQCYIELIVKEADNNVKL
IVLDRLVELKNHPLHEKVLQELVMDILRALSSPDLEVRRKTLDLALDLVSSRNVEDLVKF
LEKEVTKSSDVQGHDNTDKYRQLLVKTMHACTVKFPDTAALVIPVLMEFLGDSEELAAAD
VLVFVREAVHRHEQHKPLILDKLLEVFPSIRTVKILRGVLWILGEYCEGTTRILRFVTEV
RKSVGELPMVETELKLAAGEEVEKEEETEKTEKSSSSRRVTEMGTYVTQSAFSVANTKSG
NKSQQNRPPLRQFFMDGDFSLAGALSTSLTKQALRFLLTCPDPRKQNSFIAESMLILSSV
MHLGRSNLPKKPISDDEIDRLTVCLKVLADRNETMAEIFTSKCRGSLSHLLEIRAAEESV
QRRVAERTKTALTAVQPDDPINFAQLLAKAESGSLEDQFELSLSAAVGTLNQKKEARDPT
ASKLNKVTQLTGFSDPVYAEAYVHINQYDIVLDVLIVNQTSDTLQNCTVELATLGDLKLV
EKPSPLTLAPHDFANIKASVKVASTENGIIFGNIVYDVTGAVSDRNCVVLNDIHIDIMDY
IQPATCSDAEFRQMWAEFEWENKVTVNTNMSDLVNFLHHILKSTNMKCLTPEKALGGESG
FLAANLFAKSIFGESALANVSIEKPLGKPPGTPVAGHIRIRAKSQGMALSLGDKINLSQK
KTKK
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctgcggagagtatctgctacactcttattaacagttcctcaataactgatgaa
ccaacaaacgaaacaaaccttaagaatgagatcgaacatggagatgtgagaacaaagact
gatgcactgaagaaggtcatccttatgactctgaatggggagaagctgcaaggtctatta
atgaccataataaaatacctactcccatctgatgaccacactatcaagaagctcttgctg
attttctgggagatttggccgaaaaccgacaatgagggaaaactacgtccagagatgatc
ttagtttgtgatgcttacagaaaggatttacaacatcccaatgaattcattcgaggttct
actcttcgatttctctgtaaacttcgacagccagagctaatagagccgttaatgccagca
attcgttcttgtcttgagcacagacatagctatgtgcgcaggaatgctgtacttgcaatt
tacacgatatacagaaagttcgatcaactgattcctgatgctccagagttgatccacgag
ttcctggaaggagagaaggatgcatcgtgtaaaagaaatgctttcatgatgctcatccat
gcagaccaagaaagagctctggattatctcagtacttgcatagatcaggtgaacactttt
aatgatattctgcaacttgtgatcgtggagcttgtgtacaaagtatgccacgctaacccc
aatgaacgtgctcggttcattcgttgcatttacaatttacttcaatcatcgagccaagct
gtaagatatgaagctgctggtacattggttactttatctaatgcaccaactgctgtacgt
gctgctgctcagtgctacatagaacttatagtaaaggaggccgacaacaacgtgaagctt
attgttcttgatcgacttgtggaactcaagaatcacccactccatgagaaagtgctacag
gaattggtgatggatatattgagagctcttagctcccctgatctagaagtaagaagaaaa
actcttgatcttgctctggaccttgtttcctccaggaatgtcgaggatttggtcaaattc
cttgaaaaagaggtcaccaaatcatcagatgtacaaggccacgataacacagataaatat
cgtcagcttcttgtaaagacaatgcatgcttgcactgttaagtttccagacactgctgct
cttgttattccagtgttaatggagttcctgggtgatagtgaagagttggctgctgctgat
gttttggtttttgtacgtgaagctgtccatcgacatgagcaacataaaccacttatactt
gacaagctgttggaagtattcccatccattcgaactgtcaagattctgcgtggtgttttg
tggatcttgggtgagtattgtgagggaacaactagaatccttcgatttgttactgaagtc
cggaaatcagtcggagaacttccgatggtggaaacggagctcaaactcgctgctggggaa
gaagtagaaaaggaggaggaaacagaaaaaactgaaaagtcatcatcttcacgccgggtc
accgaaatgggaacgtacgtcacccaatcagctttcagtgtcgcaaacacaaaatccggc
aacaaatctcagcaaaatcgacctccactgcgccagtttttcatggatggggacttttca
ctagcaggagcgctctccacatctcttacaaagcaagctctcagattcctccttacctgc
cccgaccctcgcaaacaaaattcctttattgctgagagcatgctaatattatcaagtgtg
atgcaccttggtcgatccaatctcccaaagaaaccaattagtgatgatgaaatagaccga
ctcactgtttgcctcaaggtgctggcagaccgcaatgaaacaatggctgaaatcttcact
tcaaaatgtcgcggctccctttcacatttgctggagattcgagctgctgaggaaagtgtc
cagcggagggtagcagagagaaccaagactgctctaactgctgttcagcctgatgatccc
atcaacttcgctcaactacttgccaaagctgaatctggttctctagaagatcagtttgaa
ctcagtctgagtgcagctgtggggactcttaaccagaaaaaagaagcaagagatccgact
gcttcaaaactgaacaaggtcacacaactgactggattttctgacccagtatatgctgaa
gcctatgtacatatcaatcaatatgatattgtacttgatgtattgattgtcaatcaaact
tcggatactttacaaaactgtactgtagaactggctacactaggtgacttgaaacttgtt
gaaaaaccaagtccgctgacactggcacctcatgactttgcaaacattaaagcaagtgtc
aaagtggcttcaacagagaatggaatcatatttggaaatatcgtttatgatgtaacaggc
gctgtaagcgaccgtaactgtgtggtactcaatgatatacatattgatataatggattat
atacaacctgcaacatgctccgatgctgaattcaggcaaatgtgggctgaatttgaatgg
gaaaacaaagtaaccgtcaacactaacatgagtgacttggttaacttcttgcatcatata
cttaagtctacaaacatgaagtgcttgacccctgaaaaagctttaggtggagagtctggc
tttttagctgccaatctatttgcgaagtcgattttcggtgagagtgcgctagccaatgtc
agtattgaaaaacctttaggaaaacctccaggcaccccggttgcaggacatatacgaata
cgagctaaaagccagggcatggctctcagccttggcgacaaaatcaacttgtcccaaaag
aaaaccaagaaataa
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