Ciona intestinalis (yellow sea squirt): 100175420
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Entry
100175420 CDS
T01056
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03008
Ribosome biogenesis in eukaryotes
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100175420
09123 Folding, sorting and degradation
03018 RNA degradation
100175420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100175420
03009 Ribosome biogenesis [BR:
cin03009
]
100175420
03016 Transfer RNA biogenesis [BR:
cin03016
]
100175420
03036 Chromosome and associated proteins [BR:
cin03036
]
100175420
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100175420
mRNA degradation factors
5'-3' decay
5' exonucleases
100175420
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
RNases
100175420
Transfer RNA biogenesis [BR:
cin03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100175420
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100175420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
100175420
NCBI-ProteinID:
XP_009861497
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEYQVPEFDNLYLDMNGIIHNCSHPNDDDPHFRITEEQI
FKDIFNYIEVLFRIIRPQRTFFMAVDGVAPRAKMNQQRGRRFRSAKEAENNIKQALQKGE
VLPTEKRFDSNCITPGTSFMEKLQAQLEYFVQNKITTDPSWQGIKVYLSGHQTPGEGEHK
IMEFIRYERSQPEYDPNTRHCLYGLDADLLMLGLCTHEPHFALLREEVKFTRQKSSKTQN
AAQTTFHLLHISLLREYIEHEFEAVKPNLPFEFNIESIIDDWVLMGFLVGNDFIPHLPDL
HISTSALPFLYQTYIQVLPTLGGYLNEGGVINLGRLEVYLKAISSFDMDHFEEVYSDYKW
LEAKSKSKKPTDCLLVGGEVTEDKSLKIVKDLAIKQGTIEATETVDEEHSTFDQEFKLHK
RAYYQTKFNIEGTEDEISTIAYEYILGIQWICHYYYNGVQSWDWFYPYHYSPYMSDLCNI
STLHLTYNMNQPFLPFQQLLAVLPAASKDCIPEPYWNLMDESSIIGDFYPSNFSTDLNGK
QQEWEAVVQIPFIEEERLLSAMESCNSRLSASDKRRNTHGPCQLYSYDPNTPHYVKSSLH
GIFPNLEACVAKREDIPPTQWIYDDYRDFTKGLLPGCRLSTYYQGFPTLYHLPHKVSIVI
VTHGYITS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttatcgatggataagtgaaagatatccttgcttgagcgaggtg
gtgaaggaataccaggttccagagtttgacaacttataccttgacatgaacggtatcatc
cataattgttcccaccccaatgatgatgatccccacttcaggattactgaggaacaaata
ttcaaagatattttcaactatattgaggtattattccgtataatccgtccccaacgaaca
ttcttcatggcggttgacggggtggctcctcgtgccaagatgaatcaacaacgagggaga
agattcagatccgccaaggaagctgagaacaacatcaaacaagcgttacagaaaggagag
gttctcccaactgaaaagagatttgattccaactgtattacaccaggtacatcattcatg
gagaagctacaagcacaacttgaatattttgtgcaaaacaaaataaccacggatccaagt
tggcaggggattaaagtttatttatctgggcaccagacacctggagagggcgagcacaaa
attatggaatttatccgatacgaaagatcccaacctgagtatgatccaaacacaaggcat
tgtttatatggtttggacgccgatctacttatgttggggctatgtacgcatgaaccacat
tttgctttgttgagggaggaagtcaaattcactcgtcaaaaatcgtcgaaaacgcaaaac
gcagcccaaaccacattccatttgctgcatatttcattgttaagagaatatattgagcat
gagtttgaagctgttaagcccaacctaccatttgaattcaacattgaatcgataatagac
gactgggtgttgatgggtttccttgtcggcaatgacttcattccccatctacctgactta
cacatatctacaagtgccctaccattcctctaccaaacttatatacaagtattaccaaca
ttaggtggttacttgaatgagggtggtgttattaacctggggaggctggaagtttatctc
aaagctatttcaagctttgacatggatcactttgaggaagtatattccgattacaaatgg
ttggaagcgaaatctaagagcaagaaaccaactgattgtttattagtgggtggggaagta
acagaggataagtcactcaagattgttaaagacctagcaataaagcaaggtacaatagaa
gccacggaaactgttgacgaagaacattcaacatttgatcaagagtttaaacttcacaag
cgagcttattatcaaaccaagtttaacattgagggcacagaagatgagatatccacgata
gcttatgaatatattcttggtattcaatggatttgtcattattattataatggagtgcaa
tcttgggattggttctacccgtaccactactccccctacatgtctgatctatgcaatata
tccaccctacacctcacgtataatatgaaccaaccattcctacctttccaacaactattg
gctgtattgcctgctgctagtaaggactgcatacctgaaccttactggaatctgatggat
gagtcatcgattataggagatttctatcctagtaatttcagcaccgatttaaacgggaaa
caacaggagtgggaggcggtcgtgcaaattcctttcattgaagaggagcgattgttatca
gcaatggagtcgtgtaattcgcgactatcagcgagtgacaagcggcgcaacacacatggt
ccttgtcagctttatagttacgaccccaacacaccccattatgtgaagtcatcattacac
ggcattttcccgaacctggaagcttgtgtggcaaaacgagaagacatcccaccaacacaa
tggatatacgatgattatcgtgactttacgaaaggcttgctacctgggtgtagactatca
acatattaccaaggttttccaacattataccatctaccacataaagtctccatcgtgatt
gttacccatggttacatcacatcataa
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