Ciona intestinalis (yellow sea squirt): 100175488
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Entry
100175488 CDS
T01056
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100175488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100175488
03036 Chromosome and associated proteins [BR:
cin03036
]
100175488
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
100175488
Coactivators
SAGA/TFTC/STAGA complex
100175488
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
100175488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
SAGA-Tad1
Motif
Other DBs
NCBI-GeneID:
100175488
NCBI-ProteinID:
XP_002131558
LinkDB
All DBs
Position
3:complement(2451916..2457598)
Genome browser
AA seq
659 aa
AA seq
DB search
MPEVFCVTTAPNPVNVTTKVMTSVGGVTNPSATYVSINAHTSNNNAMSTTAPLKPTPGST
SSGTKYIQLQSVRSSPGLAPARAASPQLIGTPTTIQGVPSRPRTPNSGLAIPPGMVLTRG
TNGQIMIVNGNPTTSGQQVTGSNQQTGTPAARTVTTIAATSLSSVTTVGKPVPVASSVTQ
VSKAQETKLPQAKAAPITLSQDDIVNVNKCRNFLTTLIKLASTGGQLQETVRNVKALVQN
LIDDKICPEDFTKRLQVELNSSPQPYLVPFLKKSLPLLRLTMMQQNQGGASPAVAAAAQR
VSTLSDPKSAVAGKPKPVNKVVRPVAKNMRSNVPDIRLPRVTSNVPPMKHPSLQNPQPHN
SFHPPPHPSSVSGARTSSLTAMGRPISVMSNRAGQRWNATGSGGTYKDDDDINDVASMAG
VNLSEESARILATNSELVGTQTRSCQDDAVLNAPVLQKRMTEIAARNPEIQHIHADAVKF
LSCAAETRIKDLLEKVAAVVCHRMTNFKEEEHYKACSDVKMQLKFLQELDQIEKKKHDEA
ERDILMRAIKSRSKNDNPEQLRLKERAKEMQQLELEKMQIRNADETARNAIGPRKKKARI
DSPLASGLNDTINHINTPSSSRGTARSRMKRVNLRDLIFVMEHEKGLCRTKSLYASYLK
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgccggaggtgttctgtgtaactactgccccgaatcctgttaatgttacaacaaaggtc
atgacttcagttggcggagtaacgaatccctctgctacatacgtttccattaatgctcac
acaagcaacaataatgccatgagcacaacagctccattaaagccgacaccaggctccaca
tccagcggcacaaagtacatacaacttcagtcggttcgcagttcaccaggacttgcccca
gctcgagcagcgtcgccacaactaattggcaccccaaccactattcaaggagtcccatct
aggccccgcaccccaaactcaggcttggctattccacctggtatggtgctgacacgtggt
acaaatggtcaaataatgattgttaacggcaatccaactacatctggacagcaagtcaca
ggttcaaaccagcagacaggaacaccagcagcgcggaccgtcaccaccatcgcagctacc
agtctttcatccgttacaactgtcgggaaacctgtacctgttgcatcttctgtaactcaa
gtttccaaagcacaagaaacaaaattacctcaagctaaagcagctcccataactttatcg
caagatgatatcgtaaatgtaaacaagtgcaggaatttcttaaccaccctgattaagctt
gcttcaactggcggacaactccaggaaactgtgcggaatgtaaaggctctagtgcaaaac
ttaattgatgataaaatatgcccggaagattttacaaagcgtttacaagttgaactgaac
tcctcaccccaaccttatcttgtaccatttttaaagaaaagtttgccgctacttcgcttg
acaatgatgcagcagaatcaaggtggggcttcccctgctgttgcagcagccgcacaacgt
gtctccacgctctccgatccgaaatctgctgttgctggaaaaccaaaacccgtgaacaag
gttgtaagacctgtggcaaagaacatgaggagcaatgtacccgacataagacttccaagg
gtgacctccaatgtccccccaatgaagcatccatctctgcaaaacccacaaccccacaac
tcatttcacccaccacctcacccatcctctgtatcgggggctcgtacatcgtcactcaca
gcgatgggtcgtccaatttcagtgatgtcaaatcgagctgggcaaaggtggaatgctaca
gggtcaggtggaacatacaaagatgatgatgacatcaatgatgtagcttccatggctggt
gtgaacttatctgaagaaagtgctcgcatattagcaaccaactctgagctagttggcaca
caaaccaggtcctgtcaagacgatgctgttctcaatgcccctgtacttcagaaacgaatg
acagaaatagctgcacgcaacccagagattcagcatattcacgctgatgcagtcaagttt
ttgtcatgtgcagctgaaacgaggataaaagatttactggagaaagtggccgctgttgtt
tgccatagaatgacaaactttaaggaggaggagcattacaaggcttgctccgatgtaaag
atgcagctcaagttcctccaagaacttgatcaaattgagaagaaaaaacatgacgaggca
gaacgagacattctcatgagggcgataaagagtcgctcgaaaaacgacaatcctgagcaa
ctccggttaaaggagcgagctaaagagatgcaacaactagaacttgaaaagatgcagatt
cgaaatgctgatgagaccgctcgaaacgccatcggaccaaggaaaaagaaagctcgtatt
gattcaccgcttgcctctggtttaaatgatacgatcaaccatataaacactccttcttca
tcgagaggaacggcgagatctcggatgaaacgagtaaacctgcgtgatctcatctttgtc
atggagcatgagaagggcttgtgccgaactaagtcactatacgcttcctatttaaaataa
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