Ciona intestinalis (yellow sea squirt): 100175588
Help
Entry
100175588 CDS
T01056
Name
(RefSeq) intraflagellar transport protein 52 homolog
KO
K19681
intraflagellar transport protein 52
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cin03037
]
100175588
Cilium and associated proteins [BR:
cin03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
100175588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IFT52_GIFT
IFT52_central
Itf52_C
ABC_transp_aux
OST48_N
DUF4350
DUF2194
Motif
Other DBs
NCBI-GeneID:
100175588
NCBI-ProteinID:
XP_002126598
Ensembl:
ENSCING00000008561
LinkDB
All DBs
Position
7:complement(5952827..5959616)
Genome browser
AA seq
447 aa
AA seq
DB search
MMPPVPQMGMEERPTRNMILFDQTKRELFTLNNGYKTWHRRLRNSWKVAQHKDEISEESL
SEAKLFIVAAPREKFTTFEFENLKRYIDNGGSLLVLLGEGGEGSFNTNINFLLEEYGIMI
NNDAVVRSVYYKYFHPKEALVSNGVLNRAISRAAGKSLPGLDDGHGVDGGVNPISQALQF
VYPYGATLNVVKPSTAVLSTGSACIPVNRPVLATCQPKSTSGKLCVVGSAHMFSDQYMDK
EENARVMDVIIRWLTTDEIELDAIDAEDPEISDYNMLPHTEKLSDRLKSCLQEGDDIPTD
FTKLFDTKLFKLDNAVLPKILKAFDQLNIKHEPLTLIPPSFETPLPPLQPAVFPPEFCDL
PGPPLDLFDLDENFSSEKVRLAQITNKCNDDDLEYYVRECGDILGISPKLPKDGQDAKHI
LEHVLFQIVEFKKAILAENPEDQFLPE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgatgccacccgttccacagatgggaatggaggaacgaccgacaagaaatatgatttta
tttgaccaaaccaaacgtgaactttttactttaaacaacggatacaaaacttggcatcga
aggttgagaaactcgtggaaagttgctcaacataaagatgaaatttccgaagaaagtttg
tccgaagcaaaacttttcatcgtcgcagcaccaagggaaaagtttacaacatttgagttt
gaaaacttgaagcgttacattgacaatggtggtagtttgttggtgttgcttggtgagggg
ggagagggaagtttcaatacaaatatcaacttcctgctcgaggaatacgggattatgatc
aacaatgacgccgtcgtccgaagcgtttattacaaatatttccaccccaaggaggcgcta
gtgagcaacggggttttgaatcgagcgatcagccgagcggcagggaagtccctacctggg
ctcgacgacggacatggggtggacggaggggtgaaccccatatcgcaagcgctacagttt
gtatatccatacggagcaacattaaacgtggtgaagccgtcaactgccgttctatcaacg
ggatcggcgtgtatacctgtcaaccggcctgtactggctacttgccaacctaagagcacg
agtggcaagctttgtgtggttggatcggctcacatgtttagtgatcaatatatggataaa
gaggagaatgctagagtcatggatgtaataatacgatggttaacgacggatgagattgag
ttggacgcgattgacgctgaagatccagagatatcggattataacatgttgccgcacact
gagaagttatcggatcgtttaaagagttgtttacaagaaggcgacgacatcccgaccgac
ttcacaaagttgttcgatacaaaactttttaaactggataacgcagtgttgcccaaaata
ctcaaagcgtttgaccagttaaacatcaaacacgaaccgttaacgttgatcccacctagc
tttgaaaccccccttccacccctgcaacctgctgtttttccccccgaattctgcgacctc
cccggccctccgctcgacttgttcgacctcgacgaaaacttttcatcggagaaagttcga
ctcgcacaaataaccaacaaatgcaacgacgatgacttagaatactatgttcgcgaatgt
ggggatatattggggatctcacccaagctacccaaggatggacaagatgccaaacacata
ttggaacacgtgttgttccagattgttgagtttaagaaagctatcctggcggaaaatccc
gaagatcaatttctacccgagtga
DBGET
integrated database retrieval system
