Ciona intestinalis (yellow sea squirt): 100175589
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Entry
100175589 CDS
T01056
Name
(RefSeq) ATP-dependent DNA helicase Q4
KO
K10730
ATP-dependent DNA helicase Q4 [EC:
5.6.2.4
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cin03032
]
100175589
03400 DNA repair and recombination proteins [BR:
cin03400
]
100175589
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
100175589
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
100175589
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
100175589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Drc1-Sld2
ResIII
zf-CCHC
SecA_DEAD
zf-CCHC_5
zf-CCHC_3
DprA_WH
Motif
Other DBs
NCBI-GeneID:
100175589
NCBI-ProteinID:
XP_002130892
LinkDB
All DBs
Position
3:5326648..5339542
Genome browser
AA seq
1241 aa
AA seq
DB search
MPVENDFKSELPFMDLKVKIKMWEITFAKQHGRKPGKNDISTDAIARDMYIKYAKMKKEK
ENIPVAVAEKGKSVWGKSLLKANTMPPDMDDHVETAKEEEEKKEEVEIVEEVPSYRDNLK
RNLKSSFTRPRSTAFKKSYPTETLNCDENKENVKLVNVNEEISKDGLENNGVKVLASHNS
NLVPPQTCDAAKPKAFTAFGQNRKILNSSVSLSWLNEQSDDLSDLINLEENVKNEKKMKK
MEEEISNTCEMPSKDDKTNLIKDTERAGLGEIPVFVTENPSVSMASTENEASKDISTLSV
PSNPVQAEDKISDDFPANLNKSEESPPVRIKGQPEKIESENMETSQQNEKGAKSTSKSGG
SSGGGGGGLASTNFRRLNMKQKTFSRKGGQGRFLRKQVFREKLSKKGFSFRSGWKGRSGG
SSLGGGGGYRDRSDDKCFKCGETGHWASKCTGKFKGKAKEQDAENKASWDKFLENLVSDP
ASEPLSYSSQQFQQTQITLEHAEPLYTEDSFNEDEVYSVLKKFGFSEFRTGQLQAMKRIL
LGKPTLLVLSTGSGKSLCYQLPAYMYAMKRSSITLVISPLVSLMDDQVHGLPKFLRATRL
HSGMTKEQREKSMVEIQNGNVDILLVSPEALTSWAGMSPYYSPLAKLPPISFVCVDECHC
LSEWSHSFRPSYLRVCKVLKDQLGIKCLVGLTATSTRSTCISVAKQLGITDPRHGMILSM
SLPKNLSLSISKDRYKDEALEMLLNGDRFRKLDSVIIYCTRRDEVARVSSYLRTRMQREP
TEAEPEPEEQIVESNSKKRKRSTKPKSSKKRAVTIEADCYHAGMSAAQRRSVQKRFMSGK
LRIVVATVAFGMGIDKHDVRAVIHYNMPRSFERYVQEVGRAGRDRLPAECHLFLDAEGGD
LSELSRHTYGKGVDRFMVKKLVRRVFPSCKCAASNKECVGHYSAIPIDAIIQELDITREG
VETLLCYLELDGLVNVFLPTETKCRIHCYGGIPQMQKTILKCSAVAAAVKMKEKDELSGN
EVEFALDKVANELCLDIVNLKRNLRQLEWDTTLSEEPGKRGKSGVSVDFSDLSFLIHTKQ
STSNEFLDEVTASLHKRIMSQEKKEIAQLKTCFNAMQKFCYPNAGCCMDDFTSPRSEQLK
EVIDAYFQEEENSKSDDQPEPLQSSDEEEIRSSVRQFLYVHGGDLGDKVTGRAIARIFHG
IDSPCYPARNWGPARRFWRSKLNYDFNTVLKLATEELIKFR
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgcctgttgaaaatgatttcaaatcagagttaccgttcatggatttaaaagtgaagatc
aaaatgtgggagatcacgtttgctaagcaacatggtagaaaaccgggaaaaaatgatatt
tcaactgatgcaatagcaagagatatgtacatcaaatacgcaaaaatgaaaaaagagaag
gaaaatatacctgtggctgtggctgaaaaaggtaaatccgtttggggtaaatccttgttg
aaagcaaacacaatgccccctgatatggatgaccatgtggaaactgctaaggaagaagag
gaaaaaaaagaagaagtagagattgtggaagaagttccatcttacagggataatctgaag
agaaatttgaaaagttcgttcacaaggccgcgttctactgcttttaagaaatcgtatccc
actgaaactttaaattgtgatgaaaataaagaaaatgtaaaattggtgaacgtaaatgaa
gaaatttccaaggatggtcttgagaataatggagtaaaagtattagcttcacataattca
aatttggtaccaccacaaacgtgtgatgctgcgaagccaaaagcatttactgcgttcggt
caaaatcgaaagatattgaactcttctgtgagtttgtcctggctcaatgaacaatcggat
gatttatctgatcttataaacctggaagaaaacgttaaaaatgagaagaaaatgaagaaa
atggaagaagagataagtaacacttgtgagatgccaagcaaagatgataaaactaattta
ataaaagatactgaacgggctggtctgggtgaaatacctgtttttgtaactgagaatccg
agtgtttctatggccagtacagaaaatgaagctagtaaagatatttctactctatctgtt
ccatctaatccagttcaggcagaagacaaaatttcagatgattttcctgcaaatttaaat
aaaagtgaggaatccccacctgtgagaataaaagggcaacctgagaaaattgaaagtgag
aatatggaaacttctcagcagaatgaaaaaggtgcaaagtctacttcaaaaagtggtggg
tcgagtggaggtggtggtggtggtctcgctagcaccaactttcgccgtttaaacatgaaa
caaaaaacatttagtagaaaagggggccagggccgatttttgaggaaacaggtttttcga
gaaaaactttcgaaaaagggtttctcgttccggagcggttggaaaggtaggagtggtggc
tcgtcactaggtgggggtggagggtacagggacagaagcgacgataaatgttttaaatgt
ggagagaccggtcattgggcaagcaagtgtacaggaaaatttaaaggcaaagctaaagag
caggatgcagaaaataaagcctcctgggacaagtttcttgaaaatcttgtttccgaccct
gccagcgagcctttgtcttattcgagccaacaattccaacaaacacaaatcacactggag
cacgctgaaccactgtatactgaagatagtttcaatgaagatgaagtttattcagtttta
aagaagtttggtttctccgagtttcgaactggacaactacaagcaatgaaacggatatta
ttaggaaaaccgacacttcttgtcctgtcaactggttcagggaaatctttatgttaccag
cttcctgcatacatgtatgctatgaaacgtagcagtatcacccttgttatatctcctctt
gtatcgcttatggatgaccaagttcatgggcttcctaaatttctacgtgccacccgtctc
cactcaggcatgaccaaggaacaaagagaaaaatctatggttgagatacagaatggaaat
gtggatattttgcttgtatctcctgaagcattgacctcatgggcaggcatgtcaccttac
tacagtcctcttgcaaaactacctcctatatcatttgtgtgcgtggatgaatgccactgt
ttgtcagaatggtctcacagctttagaccttcctaccttagagtttgcaaagttctaaaa
gatcagcttggaataaaatgtctggttggtttaacggctacatctacacgctcaacttgt
atctcagtggctaagcaactaggtataacagatccaagacacggtatgatcttaagcatg
tctcttccaaagaacttgtctctctctatttcaaaagacagatataaagatgaggcgctt
gaaatgttgctaaatggcgaccgatttcggaaacttgactctgtgatcatttactgcaca
cgtcgagacgaagtggctcgtgtgtcctcgtatttaagaacaagaatgcagagagaacca
actgaagctgagccagaacctgaggaacaaattgttgaatcaaattcaaagaaaagaaaa
agatcaacaaaaccaaaaagcagtaaaaagagagctgttacaattgaagctgattgctac
catgcaggtatgtcagcagctcagcgtagaagcgtgcagaaacgttttatgtcgggtaaa
ttacgaattgtggtggcaactgtagcatttggtatgggaatcgacaagcatgatgtgaga
gcggttatccactataacatgcccagatcatttgagcgttatgtacaagaagttggaaga
gctgggcgtgacaggttacctgctgaatgtcatctgtttcttgatgctgagggaggagat
ctatcggaactgagccgacatacttatggtaaaggggttgatcgatttatggtgaagaaa
cttgtccgtcgtgtctttccttcatgcaaatgcgctgcgtcaaataaagaatgtgttgga
cattattctgctattcctattgatgcaattatacaggaattggatataactcgtgaaggt
gttgagaccttactttgttatttggagcttgatggattggtcaatgtatttcttcccact
gagacaaaatgtcgtattcactgttatggaggtatcccgcagatgcagaaaactattttg
aaatgctctgctgttgctgctgcagtaaaaatgaaagaaaaagatgagcttagtggaaat
gaagtggaatttgctttagacaaggttgcaaatgagttatgtcttgatattgtcaactta
aaaagaaatcttcggcagctagaatgggacaccacactttctgaagaacctggaaaacgt
ggtaaaagtggtgtttcagtcgatttttcggatttatctttcctaattcacacaaaacaa
tcaacatcgaatgaatttctggatgaagttacagcaagtttacacaaacgtattatgtca
caagagaaaaaggaaatagctcagctaaaaacatgttttaatgcgatgcaaaaattttgt
taccctaatgctggttgttgcatggatgatttcacctcccctcgaagtgagcaattaaaa
gaagtgattgatgcttatttccaagaagaggaaaacagcaaaagtgatgatcaaccagaa
ccattacaaagctcagatgaagaagaaattcggtcaagtgttcgacaattcttatacgtt
catggtggtgacttgggtgataaagttacagggagggctattgctcgaatatttcatggc
attgatagcccttgttatcccgcaagaaactggggaccagcaagaagattttggagaagc
aagcttaattatgattttaacacagtcctaaagttagcaacagaagaattgataaaattt
cgatag
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integrated database retrieval system
