Ciona intestinalis (yellow sea squirt): 100175640
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Entry
100175640 CDS
T01056
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100175640
04121 Ubiquitin system [BR:
cin04121
]
100175640
Enzymes [BR:
cin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100175640
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100175640
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
100175640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-B_box
DUF5128
SGL
Filamin
ANCHR-like_BBOX
fn3_3
Baculo_PEP_C
PspA_IM30
Motif
Other DBs
NCBI-GeneID:
100175640
NCBI-ProteinID:
XP_002129130
Ensembl:
ENSCING00000012507
LinkDB
All DBs
Position
3:complement(5479360..5488362)
Genome browser
AA seq
758 aa
AA seq
DB search
MAGPFNHINHTSSLLGESIKDVSVTRGSPLSPISSVNSMLSNSIGDMTSSGFNNSSNNLT
LPSVDGQFSSFLIGNILEAMSLHDDIKETENHSCSCGDGVAASSYCRDCKDYLCQRCVSA
HYRVRLTKDHIIVKAEQKENNVEQHRQMPYLLSPPCENQNYCTSHTNEVLRLFCDSCSVA
ICNQCTVFQHSGHNFQYLKDAVEDSKTATISLLSDAKNDLRSLEKSILDIQLLIDRVIGR
SKLVVTDVHSMTHKHMMALEQRERDLIEKIEKIKLAKCQILTSQIDRLQQSASSLKTTIE
DVKETLDSGEALEILKAKQKMETGLLNISRFCVTTIPHDDDVIMFVQPEPGLLHAFTSLG
NVKSSVSAQHSLLSKDGGPSNTVLCGTNASFTIHARDHAGAPRHIGGDVFEILIRRPDSS
TFRADVLDSGEGRYRFCFPAVQEGKYSVSAWCRGLPVCDSPFNLLVKRNINYSSRAAAGT
PVLTFGKEGSKDGELCRPWGICCDSQGHLIVADRSNNRLQIFNYDGSFHHKFGTSGSRPG
QFDRPAGVTVNKQGQIVVADKDNHRIQIFCFDGTFVGMFGERGSKSGQFNYPWDVAVNSV
GMIAVTDTRNHRIQLFSPDGTFLHKYGFEGALWKHFDSPRGVAFSHDRIIVTDFNNHRLV
IIEPDLQSARYLGSEGNQALQFLRPQGVAIDEEGNIVVADSRNHRIQVFTPTGGLIAVFG
GASTTNGSALMDRPSGVTVTPHGHIAVVDFGNNRVIVF
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggccggtccttttaatcacattaatcacacaagctcactgcttggtgaaagtatcaaa
gacgtttctgttacaagaggaagccctttgtcccccatctcctcagtaaacagtatgctc
agcaatagcattggcgacatgacttccagcgggttcaacaattcttcaaacaatcttacc
ctgccttctgttgatggccagttctcatcttttttaattggcaacatactcgaagctatg
tcactgcacgatgatattaaagaaacggaaaatcactcgtgtagttgtggtgatggggtg
gcagctagctcctactgtcgtgactgtaaggactacttgtgccagcgctgtgtttctgct
cactatcgcgttcgattgacgaaggaccacattatagtaaaagcagagcagaaagaaaac
aatgttgaacagcatcgtcaaatgccctatctactttcccctccatgcgaaaatcaaaac
tattgtacttctcatacaaacgaagttttgcgtttattttgtgactcttgttctgtggca
atttgcaaccaatgcactgtatttcagcatagcggacataacttccaatacctcaaggat
gcagtggaagacagtaaaactgcaacaatttctcttttatctgatgctaaaaatgacttg
agaagtttggaaaaaagcatcttggatattcagcttctaattgatcgtgtgattggtcga
agcaaattagtcgtcacagacgttcattcaatgacacacaaacacatgatggcgctagag
cagagggagcgagatcttattgaaaaaattgaaaaaattaaattggcaaaatgccagatc
ctcacttcacagatagaccgccttcaacagtcagcaagcagcttgaaaacaacaattgaa
gatgtgaaggagacactcgattctggggaagctctcgaaattctcaaagccaagcaaaag
atggagaccggtttacttaacatatcaaggttctgtgttaccaccatcccccatgacgat
gatgtcattatgttcgttcaaccggaaccaggattactgcatgccttcacatcacttggt
aacgtgaagagctctgtatccgcccaacactcattactctcaaaagatggtggtccttct
aacacagtactatgcgggacaaatgcatcgtttacaatacatgcacgggaccatgcagga
gccccgagacatattggtggtgacgtttttgagattctcattcgtcgccctgacagctca
acgtttcgtgccgatgtgttagattctggggagggaaggtatcgtttctgctttcctgct
gtccaagagggcaaatactcggtgtctgcttggtgccgtggcctgccagtatgtgacagc
cccttcaatctacttgtcaagcgaaatatcaattactcatcaagggcggctgcaggcacc
cctgtacttacgtttggcaaggaaggctcaaaagatggtgaactctgcagaccgtgggga
atatgctgcgattcgcagggccaccttattgttgccgatcgtagcaacaaccgattacag
atcttcaactacgatggaagttttcaccataagtttggaacttcggggtcgcgacccggt
caatttgatcgacctgcaggggtcaccgtgaacaagcaaggtcaaattgtagttgcggac
aaagacaaccatcgaatccagatcttctgtttcgatggcactttcgtgggcatgtttgga
gagcgaggttctaagagtggacagtttaattatccatgggacgtggctgtcaactcagtt
ggtatgattgcagtcaccgacaccaggaaccacagaattcaactgttctctccagacgga
acgttcttgcacaaatatgggtttgagggtgcgttatggaaacactttgattcaccacga
ggtgtcgctttttcccatgatcgcatcattgtcactgacttcaacaaccatagactggtc
ataattgaaccagatctacagtcagccaggtacttgggctcagaaggcaaccaggctctg
caattcctaagaccacagggagttgccattgatgaagaaggcaacatagtagttgctgat
tcccgtaaccatcgtattcaagtcttcactccaactggtggtttgattgctgtttttggt
ggagccagtacaactaatggatccgctcttatggatcgtccttctggtgtaacagtgaca
cctcatggccatattgctgtcgttgattttggaaacaaccgcgtcatcgtcttctaa
DBGET
integrated database retrieval system
