Ciona intestinalis (yellow sea squirt): 100175700
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Entry
100175700 CDS
T01056
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100175700
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
cin04091
]
100175700
Lectins [BR:
cin04091
]
C-Type lectins
Lecticans
100175700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Big_9
Lectin_C
Calx-beta
Med19
AP3D1
Cadherin_5
Motif
Other DBs
NCBI-GeneID:
100175700
NCBI-ProteinID:
XP_002124581
Ensembl:
ENSCING00000013358
LinkDB
All DBs
Position
8:235394..253555
Genome browser
AA seq
2181 aa
AA seq
DB search
MGRMLIFVLALVVNCCLGNTHAQQIRHNYGIEVANGRVVYMTKNLLSFPSDPETPCKVEV
VQNEPMYQKVGSFTPETFDCDYLPNSVRYEHNGSPFLHEDVVKLRTYILMPNETVQETVL
VHITILNSRCDIIQINEVPLRVERTTSVSNPINRDVMEFHYDRDFDTICEVQIMYEGLYD
FPAHGELVKTANSTDEHELTSPQYIRTGTIVSRCDDFLLLGVRYKHGSSPTPDVDYIPIH
VIVTDRRSGSVLTQEKHYLPVIISYAFPNQPPKPSFTNMYILEVDQFVLTNILPMTVSAM
DGETNNERLIFNITKPPADGFITHLNDESKQIDSFLQEDLQSLQIAYQPPNISYPERHSF
VVEFVVFDSYYLQSLPIKALFSVRVARTNAPRVSWNMGLSMLEGQSRPLTHNSFQIVDRD
NLYQVRFMLAGGLQHGRLYINNRPGFTFNWRDIENNVVVYRHDDTDTRKDKIVFRITDGF
HSTRFKLPITILPKDDAPPYLINNIVFNVREGQTILIHRFMLEAHDADSSADYIKFNITK
LPSAGEIQKRRKWERAGWFVDKFQQSDLYQGLIYYKHLGNELFEDSFEFTLIDSCVPVPN
ISPVHKVVIRITPVDDLPPQPADGNTLSLTLNETDVVHLTRRELHYIDMEDEETDVTFTI
DIGCRVIGKNDEMNAGRLVFTDDMVMLMKDPSVPTLRTFTQSAVDHQKVAYMPPMSDIGL
HPVDIEFIFTVSDDHNRQVRGVNFAITLLPVDNQAPSIQGTSLYLNEGGTENISPDLIQI
DDEDTLRENIILVLTKVPSAGTIFRDGVAMVENDTFLCQDIEQFRMVYTHDGSENHLDQF
ELTVSDGKQTSSTLMKVQMEPVDDLSPSIHGSNTTLSVHEGGSVLIDSEFLSATDEDTTD
DNLIFEVLSFPSHGNIVINGKTVTTFLQQDIINKKVFYIHDKSEVGQSVMHDVATVMVTD
RRGQPSEDDNSVVKTKDLLFDIYPINSRPPRIALGNEVFRCNEGEFKTLSQNFLMADDID
TPSLNLSFIITENPTFGYLEDVTPRPGYEKIIGKRTTRFNYSQLLDGNIRYVQSIHDGIE
PTSDQFSIQATDGHYFSQQVPFLVSITPMNDEEPVFRVENITCSEGNMSPMTLIVDDMDI
PHDNVMVVVSKPPSHGMVVDEMEMLARVRRSDDVLRYREESHHDEMHEMNEFSMEQLAHH
NVMPTYMHDGSESTFDQIELKVTDGIHIQKTKLMVNIIQVNDERPIVVRNEGIRLEIGST
KIISSVSLQTTDADTESSELVYELHSIPRRGDLQIKRGNVWDSLEYAHTFTEEDVEMNRI
RYQHSSVLGSKAQDSFRFSVTDGEFTTHRIRFNINIEHTKKNAVHIITHPLHVNEGGQGF
VTSNILLASDGAHRPEEITFDVIGLPLYGQIEYVNFPQIPIEMFSQLDVLARNVKYVHTS
KVDSPVDSFHILASNGIKTKEVDVTVLITSVDEELPRVSIHTDVTSSNINAGQSNLMMYS
GSTVTITNMIINITDDDTADDNVRLNIVDHPEHGSLTCDGNFIGQSTVISLNDLKRGVFA
YQHNGDGASIDRFTFTVSDGVHAGYIYQGHRTLEALSFNLRIERLDESSPYIAVNVEPTT
IQALGTGKSPDYGIYLDSSVLRAEDSATSRNEDLLFSILTPPSYGILRLVGQEIYDDISI
MQFTQADLDHRNIVYVISSNLRVTNDNFTFTVQDAWSNMLFGNKFSMSWSRLEMEEKKIK
ICEEVGTIQISLHRMGNLSQSSFISVFVKPGSARPELDYNPSSALQVQFDPGSAQQTWGV
TINTDEIEERSEKFLVKLHAPVNTVLSREKHKTLIIIKDHSHPTCSGRILRKKKKNKKSR
KKKSKTKKSKKKKRKKKHKNVASDGPSSTNAVRTVRYGKIGNGITVSPASFFRNETHRIW
RYHGILPVTVDETEEHSISLPSNINQPTESSNLKELHLIDESQANDDPAVSKVSLFKTRI
NVQNSNESAVITVRGNSQTDTPSSSISKLCVLSSRGRLYYDTERSALFQCNGAEWIPWVP
NSKPKVSTVTSQVETCEDGWMAFQNKCYYVSDVQDISWNAAQRLCRETHAANLVSIHNRK
QLNWLWKLSRKNSFYLGLNGKLNPRNWEWIDGNNVVFTNWKNGFPHHGGGSCSIVARKRW
INHSCSSTPSHQTKYICVRNP
NT seq
6546 nt
NT seq
+upstream
nt +downstream
nt
atggggcgaatgcttatttttgtgcttgccctggttgtaaactgctgtttaggaaacaca
catgctcaacaaatacggcacaactatgggatagaagtagcgaatggccgagtcgtttat
atgacgaagaatttgctttctttcccaagtgaccctgaaactccgtgcaaagttgaagtt
gtgcaaaacgaaccgatgtatcaaaaagtcggatcctttacgcccgagacgttcgattgc
gactacctcccgaattctgttagatacgagcacaacggttcaccatttcttcatgaagat
gttgttaaacttcgaacttacattcttatgcctaacgaaactgttcaagaaaccgtgtta
gtgcatatcacaatattaaattctcgatgtgacatcattcaaattaacgaagtaccattg
cgtgtggaaaggacaacttcggtttccaacccgatcaacagagatgtaatggagtttcat
tacgaccgtgattttgatactatatgcgaggttcagatcatgtacgagggtttatatgat
tttcccgcccatggggaattggttaaaaccgcaaactcaacagacgaacatgaattgacg
tctccacaatatattagaactgggacaattgtatcaagatgcgatgactttttattgtta
ggtgttcgatacaaacatggatcatcccccacacctgatgttgattatattccaattcat
gtcattgttactgacaggagatctggttctgttttaacacaagagaagcattacctacct
gtgataatttcttatgcattcccaaaccaaccaccaaagccttcatttacaaatatgtac
attcttgaggttgaccaatttgtgcttaccaacattttgccgatgactgtgtcagcaatg
gatggtgaaactaacaatgaacgtcttattttcaatattactaaaccaccagctgatggg
tttattacacatttgaatgatgaaagcaaacagattgactcgtttttgcaagaggattta
cagagtcttcagattgcatatcaaccaccaaatattagttatccagaaagacattctttt
gttgttgaattcgttgtctttgactcatattatctacaaagccttccaattaaagcgcta
ttctcagttagagttgcacgcacaaatgcaccaagagtgtcctggaatatgggattatct
atgttggagggacagtctcgaccactcacccacaattctttccaaattgtagacagagac
aatctttaccaggtgcggtttatgttggctgggggattacaacatgggcgtttatatatc
aacaatagacctgggtttaccttcaattggagagatattgaaaacaatgtagttgtatat
cgtcatgacgatactgacacacggaaagataaaattgtttttcgaataactgatggattt
cacagcacaagatttaaacttccaattacaatcttacccaaagacgatgcacctccatat
ttaataaataatattgttttcaatgtacgggaaggtcagacaattctgattcatcgtttc
atgttggaagctcatgatgcagattcaagcgcagattatattaagtttaacattactaaa
ctaccatctgctggcgagatacaaaaaagacgtaaatgggaacgtgctggttggtttgtc
gacaagtttcaacaatctgatctttatcagggcctaatatattacaagcatcttgggaat
gaactatttgaagattcatttgaatttacattgattgacagctgtgttcctgtgcccaac
atatcccctgttcataaagtcgtgatacgaatcacccctgttgatgaccttccacctcaa
cctgctgatggaaatacattgtcgcttacattgaatgaaacagatgttgtacatttgacc
agaagagagttgcattatattgatatggaagatgaggaaactgatgtgacgtttactatt
gacataggttgtcgagtaattggaaaaaatgatgaaatgaatgctggtcggttggtcttt
acagatgatatggtgatgttaatgaaagatccatctgtaccaactttacgtacattcaca
caaagtgctgttgatcatcaaaaagtagcatacatgcctccaatgtcagatattggtttg
catccggttgatattgagttcatattcacagtgagtgatgatcataataggcaagtgaga
ggagttaactttgcaatcacacttctacctgttgataaccaggcaccttcaatccaaggt
acaagtttatatttgaatgaaggaggaacagaaaatatttcccctgatttgattcaaata
gatgatgaggacactttaagagaaaacatcatccttgttttaacaaaagtaccatcagca
ggaacaattttccgagatggagtagctatggttgaaaatgatacttttttatgtcaagat
attgagcaatttcgaatggtttatactcacgatggttctgaaaatcatcttgatcagttt
gaactaacagtgagcgatggaaaacaaacatcttcaacattgatgaaagtgcaaatggaa
cctgttgatgatttatctccgtctattcatggcagcaacacaacattgagcgtacatgaa
ggtggctctgtattaatcgatagtgagtttctttccgccacagatgaagatacaacagat
gacaatcttatatttgaagtcttgtcgtttccaagtcatggaaacatagttattaatggc
aagaccgtcaccacatttctgcaacaagatataataaataagaaagtgttttacatccat
gataagtcagaagttggtcagtctgtcatgcatgatgttgcaaccgtgatggtgacagat
agaagaggtcaaccaagtgaagatgataactctgttgtaaaaacaaaggatttgttgttt
gatatttatccaattaactcacgaccaccaaggattgcgctcggaaacgaagtttttaga
tgcaatgaaggagaattcaaaactttgtctcaaaatttcttaatggctgatgacattgac
acacccagtttaaatcttagttttataataaccgaaaacccaacttttggttatttggaa
gatgtaactccaagaccgggttatgaaaaaatcattggaaaaagaacaactcgcttcaat
tattctcaactattggatggaaatattcgttatgttcagtcaattcatgatggaattgaa
ccaacatccgatcaattttctattcaagcaacagacggacattacttctctcaacaggta
ccttttcttgtatcaataactccaatgaatgatgaagaacctgttttccgcgtcgaaaat
ataacatgtagtgaaggaaacatgtcacccatgacattgattgtggatgatatggatatc
cctcatgataatgtgatggtggtcgtgagtaaacctccatcacacgggatggttgttgat
gaaatggaaatgttggcgagagttcgacgatctgatgacgtgctaaggtatagggaagag
agtcaccatgatgaaatgcatgaaatgaatgaattctcaatggaacaactagcccaccat
aatgttatgccaacttacatgcatgatggatcggaatctacatttgatcaaattgaactc
aaagtaacagatggcatacatattcaaaaaacaaaattgatggttaatataattcaagta
aatgatgaaagaccaattgttgttcgtaatgaaggaattagattagaaattggatcgaca
aagatcataagttcagtttcattgcaaaccactgatgcggacacagaatcgtcggaattg
gtttacgagttgcattcaataccaagaagaggagacttgcaaataaaaagaggaaatgta
tgggacagtttagaatatgctcatactttcaccgaggaggatgttgaaatgaatcgaatc
cgttaccaacattcaagtgttctcgggtcgaaagcacaagattcgttcaggttttctgtg
actgatggtgaatttacaacccatcgtattaggtttaacattaatattgaacacaccaag
aaaaatgctgttcatattataactcatcccctgcatgtaaatgaaggaggccagggtttt
gttaccagcaacattctgttagcaagtgatggtgcacatcgaccagaagaaattacgttt
gatgttattggtctaccattatatggtcaaattgaatatgtcaattttccacaaattcca
attgaaatgtttagccagcttgatgtgttagcacgaaatgttaaatatgttcacacaagc
aaagttgactcacctgtggattcttttcatatcttggcaagtaatggcataaaaaccaaa
gaagtggatgtcactgttctcatcacatctgtagatgaagaacttcctcgtgtatcaatc
cacaccgatgtaacatcatcgaatataaatgctggtcaatccaaccttatgatgtacagt
ggatcaactgttaccataactaacatgataatcaacataactgatgatgatacagccgat
gataatgttcgactaaatattgtggatcaccctgaacatggatcacttacatgtgatggt
aattttatcggtcaatcaactgtaatctcactcaatgatttgaaacgaggggtgtttgct
tatcaacataatggtgatggtgcaagcattgatcgctttacgtttaccgtgagtgatgga
gttcatgctggttatatttaccaaggacacagaactttggaagcattgtcttttaacttg
agaatagaacggttggatgagagttcaccatacattgctgttaatgtggaaccgacaaca
atacaagcattaggcacgggtaaatcaccagattatggaatatacttggactcaagtgtt
ttaagagcagaagactcagcaacaagcagaaacgaagatcttttgttttcaattcttact
ccaccatcatacggaatacttcgtctggttggacaagaaatatatgatgatatttcaata
atgcagttcacacaagctgatttggatcatcgtaatattgtttatgtgatatcaagtaat
ctacgtgtcactaatgataatttcactttcactgtccaagacgcatggagcaacatgttg
tttggaaacaaattttcgatgtcatggtcccgcttagaaatggaagaaaagaaaattaaa
atttgtgaagaagttgggacgattcaaatcagcttgcatagaatgggaaacttaagtcag
tcgtcctttatcagtgtttttgtgaaaccgggaagtgcaagacctgaattggattacaat
ccaagcagtgctttacaagtccagtttgaccctggatcagcacagcaaacatggggtgta
acgataaatactgacgaaattgaagaaagaagtgaaaagtttcttgtgaagcttcatgcg
ccagtaaacacagtgctcagtagagagaaacataaaacgctgataataattaaagaccat
tcgcacccaacttgttctggcagaattttaagaaaaaagaaaaaaaataagaaaagtcga
aaaaagaagtccaaaacaaaaaaatcaaaaaagaagaaaagaaaaaagaaacataaaaac
gttgcatctgatggcccatcatctaccaatgctgtcagaacagtccgatatggaaagatt
ggaaatggaattacagtttcacctgcttcgttctttagaaatgaaacccatcgtatttgg
aggtatcatgggatcttaccagtaactgttgatgaaactgaagaacattctatttcttta
ccatcaaatataaatcaaccaacagagtcatcaaatttgaaggaacttcatcttatagat
gaatcacaagctaatgacgatccagctgtgtctaaagtatcattgtttaaaacaagaata
aatgtacaaaactctaacgaatccgctgtaataactgtgagaggaaattcacaaacagac
acaccttcaagcagtatttctaagctttgtgttttatcatcacgtggtcgtctttattat
gacactgaaaggtcagctttatttcaatgcaatggtgcagagtggataccatgggtgcca
aattcaaaaccaaaagttagcaccgtaacaagtcaggtagaaacgtgtgaagatggatgg
atggcttttcaaaacaaatgttattatgtgagtgatgtacaagatatttcatggaacgca
gctcagcgtttatgccgtgaaacgcatgcagctaatctcgtttccattcacaatcgaaaa
caactcaactggctttggaaactgtcaagaaaaaactcgttttacttaggactaaatgga
aaactcaatccacgaaactgggaatggattgatggaaataatgttgtgtttacaaactgg
aagaatggatttccccatcatggtggtggaagctgttccattgttgctcggaaaagatgg
ataaaccattcatgttcatcaaccccatcgcatcaaactaaatatatttgtgtgcgaaat
ccatag
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