Ciona intestinalis (yellow sea squirt): 100175786
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Entry
100175786 CDS
T01056
Name
(RefSeq) ribonucleases P/MRP protein subunit POP1 isoform X1
KO
K01164
ribonuclease P/MRP protein subunit POP1 [EC:
3.1.26.5
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100175786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100175786
03016 Transfer RNA biogenesis [BR:
cin03016
]
100175786
03029 Mitochondrial biogenesis [BR:
cin03029
]
100175786
Enzymes [BR:
cin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
100175786
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
100175786
Transfer RNA biogenesis [BR:
cin03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
100175786
Mitochondrial biogenesis [BR:
cin03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
100175786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POPLD
POP1_N
POP1_C
Motif
Other DBs
NCBI-GeneID:
100175786
NCBI-ProteinID:
XP_002130374
UniProt:
F6Q7D4
LinkDB
All DBs
Position
1:complement(4346724..4355155)
Genome browser
AA seq
985 aa
AA seq
DB search
MQKIEKVTEVKQAPVLCKIGTNDSASVTLKHSDELESTALNISKDPLPTIKQENEKKTSF
DDKSDSRLRKWKKRMRFQPKNITTVEEVQHDYYKKLLANSDVTEVELPRVISVLQHANAA
ANEIQSMMSAIKQHSGNKTALQILPRHMRRRSAAHNVKRLPRRLRELAQQQGAQNGENTK
VCRKKRRRNINLQNEYSKRAGKSGWLETHMWHAKRFHMTDTNDPLYSAWGHRVAIHPNDK
SFRACYRATANHCLLQDISFYKCIQISCDLDKQEEIFCIIESLMAVNSNIPVKVKSGECE
HHILIYDKRSEPPQLIGPASIMYQQQGKEQIIWLRIHPTLLEKTNDLISYLVGNRSSISI
TDISSELLRFRLSGPKSSVTLLSVLRPFNTKEFHDEVSDSIASPSTQSVVNKWIVEHLEK
VALQNYSFVTMMTACHKQQFHKADKYKSGGVEESQIIPLIVNDPRLTLPIQKTPAKLKDL
LSDTADCVSTTDVVLNDKSSVTSSPLWNSDARNDISNRRLSDNVVSTRKNETKFELSEDA
KKSLKSISQPIPVILIRRSGFKKPKQPPTKSITEDVKNTQSSEETYFAQGWDLIIPAKWA
TAFWIPLVYNQARVGGIREQSRTHLECKRPFFPRDYPDCESGRLFWEATMKRKQTVYFRK
PPAKRPNYSILATPFPFAPCWEHLFERKSCFEISHADQVDVKENTELNVQKNKLQTKELN
VISEDTSTNMPDVKPKTFNSLQKNNSNQISGFKRQALDNISSTPSKMLKHENQKDFPVNV
IHNTELLKKVEHLCYDDAVSGELDILCNENTFGLICVQISMINKGCPVECSSICVPNTDD
IIKLEAQYKDLHGKGLANCSGPYEATHMDPIKMEKKRATDSKIPHPTKNIHEKKTEKPIS
FPVYPSRTICGFVTSGDYLFCSGGGGGVGFVTLKHLVQVYREQVKNDWLKLFVREVLHNR
GALLLLRNPDSNQYRFAVIEIYSSE
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaatagaaaaagttacagaagtcaagcaagcacctgttctttgtaaaattgga
accaatgattcagcaagtgttactttgaagcatagtgatgagcttgaatcaacagcatta
aatatttcaaaggatccactcccaacaataaaacaagaaaatgagaagaaaacatcattt
gatgacaaatcagattcccgtcttaggaaatggaagaaaagaatgagatttcaaccaaag
aacatcacaacagtggaagaggttcagcatgactactataagaagttacttgccaatagt
gatgttactgaagtagagttgccaagagtaatatctgtactgcagcatgccaatgctgct
gcaaatgaaattcaatcaatgatgtcagcgataaaacagcattcaggaaataaaaccgca
ctgcagattcttccacgacatatgagacgaagatcagctgctcataatgtgaagagactt
ccaagaagactgagagaacttgctcagcaacaaggtgcacaaaatggagaaaacactaaa
gtatgtcgtaaaaaaagaagaagaaatattaatttacaaaatgaatatagcaagcgagca
ggaaaaagtggttggttagaaactcacatgtggcatgcaaaaagatttcacatgacggac
acgaatgatccactttacagcgcatggggacatcgtgtggccatacatcccaatgataaa
agtttccgcgcatgttatcgagccacagcaaatcattgtttgttgcaggatatctctttc
tacaaatgcattcaaatatcatgtgaccttgataaacaagaggagattttttgcatcata
gaatcactcatggctgtgaacagtaatataccagtcaaggttaaaagtggagaatgtgag
catcatatacttatttatgataaaagatcagaaccaccccaactaattggacctgcttcc
atcatgtatcagcaacagggtaaagagcaaataatttggttgagaattcatccaactttg
ttagagaaaaccaacgatttaatttcttatttagttggtaacaggagttccataagcata
actgacatctcgagtgaattgcttcgttttcgattatctggcccaaaatcaagcgttact
ctactttctgtgttgcgaccttttaatacaaaggaatttcatgatgaagtttcagattcc
attgcttcaccatctacacaatctgttgttaacaaatggattgtggaacatttggaaaaa
gttgctttgcagaattatagttttgttaccatgatgacagcttgtcacaagcaacagttt
cacaaagctgacaaatataagagtggtggagtggaggaaagtcaaatcattcctcttatt
gtgaatgatcctagacttactttgccaatacagaagactccggccaagctaaaagattta
ttatcagatactgcagattgtgtttccactactgacgtggtgttgaatgataaaagcagt
gtcacatcaagtccattgtggaattctgatgcaagaaatgatatttcaaaccggagactt
tcagataatgttgtcagtacaaggaagaatgaaacaaaatttgaattgagtgaagatgca
aagaaatcattaaaatcaatttctcaaccaattccagttattttaatcagaagatctggt
ttcaagaaaccaaaacagcccccaaccaaaagtattactgaagatgtgaaaaatactcaa
tctagtgaagaaacttattttgcacaaggctgggatcttattattccagcaaaatgggca
acagcattttggattccattggtgtataatcaagctagagttggtggaatacgtgagcaa
tcacgcacacacttggaatgcaagcggccgtttttcccacgagattatccggattgtgaa
agtggtcgattgttttgggaagcgacaatgaaaaggaagcagacggtttatttcaggaaa
ccaccagccaagcgacctaactactctattcttgctactccatttccatttgctccatgt
tgggaacatctgtttgaaagaaaatcttgttttgaaatctcacatgccgatcaagttgat
gtaaaggaaaatactgagttgaatgttcaaaagaacaagttacaaacaaaggagttgaat
gtcatttcggaggatacaagcacaaatatgcctgatgttaaacccaaaacatttaattca
ttacaaaaaaataattctaaccagatatcaggtttcaaaaggcaagcattggataacatt
tcatcaacaccttcgaaaatgttaaaacatgaaaatcagaaagattttccagtcaatgtg
atacataacactgaactgttaaaaaaagtggaacacctatgttatgatgatgctgtatct
ggggaacttgacattttgtgcaatgaaaacacatttggtcttatttgcgttcaaatttcc
atgatcaacaaaggatgtcctgtggaatgtagctcaatatgcgttcctaatactgatgat
ataataaagctggaagcacagtataaggatctgcatgggaaaggtttggcaaattgctct
ggtccgtatgaagcaactcacatggatccaattaagatggaaaaaaaaagagcaacagat
tcgaaaattccacatccaaccaagaatattcatgagaaaaaaactgagaaaccgatttca
tttcctgtttatccatcacggacaatatgtggtttcgtgacttcaggagattacttgttt
tgcagtgggggagggggtggtgtggggtttgtcaccctcaaacatctggttcaagtttat
cgtgaacaagtaaagaacgattggttaaaattgtttgtccgcgaggtattacacaaccgt
ggagctctactgttgcttagaaatccagattcaaatcaatatcgttttgcagtaattgaa
atatattcttcagaataa
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