Ciona intestinalis (yellow sea squirt): 100175808
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Entry
100175808 CDS
T01056
Name
(RefSeq) HEAT repeat-containing protein 1 isoform X1
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100175808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100175808
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
100175808
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_HEATR1
U3snoRNP10
CRLF3_N
Motif
Other DBs
NCBI-GeneID:
100175808
NCBI-ProteinID:
XP_002124681
LinkDB
All DBs
Position
5:4937882..4955938
Genome browser
AA seq
1754 aa
AA seq
DB search
MTSLSEQLRRLALPESQVADTFDKRIPSLLFEPGVAATLDRDTFFGLGVNGLEELCLLDP
KFRDLFQQDLFSAQAKDTERTTQTKQFNKHLNEKIQSFLIRVCPYFLLKPATKCIEWLIY
RFHIHTFNTDDLLMCALPYHGTNLFVRTVQLLDVSHPTNKWCWLSQVKNEGVSLSNKNIA
THCTRDLAFLQFICNMLTNAYKVVQENPDWSMVVVLNFYTTTVMGVLQSPKISETLLSKL
MPSVLEGLKSSVMEHQASSVMILSQLSVKITFERKVLSNIIKSGLKNVSTKLEKVFLRAI
LLFSQNQEQFQNLPKKVILQLSSHGGFIQEIVEIYRSGRIEKIVQILVEVLVSNITDSDT
EEKIWKTNIEVLTRFVQDLDLTVNLQLLLMRLLVENFTSTQSDKKSQKFLLFGKLLGQLQ
RKFPLSFDKVISEFFSREDVDKTTSGLLLSIFGASAKHQLIHDSSVSVAIGLLHPEDSVR
SQALRHLSDSLFKDPTSEVVRFSQDNVIRILGLDDSPLVVEAALQLLRKHVDLFKDDHIE
VSNTLVNLFFSKISIPDWKKAVQVAAQVLTVLSSAVPDENNVVSMRTTAAVLHILLMSLT
EKGWSTLAGNILKSDFCQKNSFFEAIRVAVLNKGKASQDNKVSAKFFHDLLCVVEQISDC
ENTQSSSAVFYFLCTIGVDDLELLTIICNSLSQKSANLKHKSSSDLSLNDGFYDLLQQPE
TPDRDIISLHFDTLRKFLESVVSLKSDISIPSFPQLGTLLQNAKRLDLTTPSKISLLTKT
FLSLLNLSESAKTGYENDEKLKSRITASVNSLISLFLNEVLRSQSLLDFLPIFLCEEFIN
PCLSSPVTCLQTLNILKVFLHATMNKVPAKATIDASHPILPCLLLLCSSNHHNIRRINME
SIQCVSSMKTNPVSSLMVHLTKHAEELTSDPEYILQCFANYFNEKNKPAIKKSRHGLLKT
LVQNMVNESAVSKLGVAFMTRCINKVDPFHFDPLLPLVTTFVDQSNVRTLDENEALLTTE
WLQKLTPDSLNETLKRELFFKVLTFQTEDKSSYLPQNVVFNLITKPFYTSLSDEIKQQLI
STLLDIGQSTANPDVAKMVFKVFKVIPLRSNYIIKELKKSFPSIDTKSTAPSGVIAAKRA
RLSKSTSSESGEVSETETPTWKRMIVLLEVLQHKKKIIKPKLLVAHLFTALNWMIDLQTG
NDVIDYGTQLVLGALHNVFMIAKSKLGAKDDTDIRNSLRVELLVKCIQTSGNTQTCQHAV
VLLAEAASICPEKLLHSVMSIFTFMGSNLLRRDDSYSFQIITKTIHTVVPALLQHMESAT
SGISKNTVTDIIRVFVDALPHIPPHRRLVVFEELINTLGGNEYLWQTLLLLVASRANKIT
KTSQEDEQDILSGSEEDVFLPSTVDALMEVCSSVSNLFPDHLQLESMVRMLNFISLVPDE
NDPKQKIDLNLPNLIDVPKQSTSHLRRLHLAVVSFASHLLSLEGGISNSFKLEKSMEHDA
AENATKMLTKFQSLLETALSYLSQTTTAVSNTHDDMTSRYYRTLQNRLNSLLDKINNLLP
SDTFMLVVSSILHEQSSNTTVHKVIELFNDRVAHTKHTLTPDQENVLLHISRQLIVLCGD
HGTDNHGMRAVAYTGLRHVARMCGIGCATHLIPILSMICDITKEKQPPIQVISSAMLCLG
ELFSTLKAHCISHLPSIAPCHCDASSPIKIREKLPHDGMYIISLSEVSRHLTTFHQSLPG
WVYFRVDLCFTCCS
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atgacttctttatcggagcaattaagacgtcttgcgttgccggaaagtcaggttgctgat
actttcgataaacgaattccttcattgttatttgaacctggtgttgctgccacacttgac
agagatactttcttcgggttgggtgtgaatggattggaagagctgtgtctcctggacccg
aaatttcgtgatttattccaacaagaccttttcagtgcccaagcaaaagacacagagagg
acaacccagactaaacaattcaataaacatcttaatgaaaaaatccagagtttcctgatt
agagtgtgtccttatttcttgctcaaacctgcaacaaaatgtattgaatggttgatatac
agattccacatccatacattcaacacagatgatctgctgatgtgtgcattaccatatcat
gggaccaacttatttgtgaggacggtccaactacttgatgtatctcatcctactaataag
tggtgctggctctctcaagttaagaacgaaggagtttcattgtccaacaaaaatattgca
acacactgtacaagggatctcgcctttctacagtttatttgtaatatgctgacaaatgct
tacaaggtagtgcaggaaaatcctgactggtccatggtagttgtcctaaatttttacacc
acaactgtgatgggtgtgttacagagtcctaaaatatcggaaacccttctttctaaactg
atgccttcagtgttagagggtctcaaatcatcagtgatggagcatcaggcatcttctgtc
atgattttgtcccaactatctgtcaagatcacattcgaacggaaagtactgtccaatatt
atcaaatctggtttaaaaaacgtttcaaccaaactggaaaaggttttcttgcgtgctatc
ttgctgttttcgcagaaccaagaacagtttcagaatttgccgaaaaaagtaatactacag
cttagttctcatggtggtttcatccaagagatcgtggaaatatatagaagtggccgcatt
gagaagattgttcagatcttggtggaggttcttgtatctaatatcacggactcagatact
gaagagaaaatttggaaaactaacattgaagtattgacacgatttgttcaagatcttgat
ctgacagttaacttacagcttcttcttatgagattactggttgagaatttcacttcaact
caaagcgataaaaagtcccaaaagttccttttatttgggaaacttctcggccaactacag
cggaaatttccgctctcgtttgacaaagtgatctctgagtttttctcgagggaggatgtt
gataaaacaacatccggactccttctctccatcttcggggcatccgcaaagcatcagttg
atccacgatagcagtgtgtctgttgcgatcggtctcctgcatccggaggattctgtccga
tcccaagctctgcgtcatctttctgactcattattcaaagacccaacttcagaggttgtg
agattttctcaggacaacgtgatccggattctcggacttgacgactctcctcttgttgtg
gaggcagctttgcagttactcagaaaacatgtagatttattcaaggacgatcatatagaa
gtttcaaacacattggttaatctgttcttctctaaaatatcaattcctgattggaagaaa
gctgttcaagttgctgcacaagttttgacagtcttatcttctgctgtaccagatgaaaat
aacgttgtttctatgcgaactactgcagcagtgttgcacattctgctaatgagcctcaca
gaaaaaggatggtcaacactggccggaaatattttaaaatctgatttttgtcaaaaaaat
tcgttttttgaggcaattcgagttgctgttctaaacaaaggcaaagcctcacaagacaac
aaggtctctgcaaaatttttccatgaccttctttgcgttgtcgagcagatatcggactgt
gagaacacacagtctagcagtgctgtgttctattttctctgcactattggagtagatgac
ttggaactccttaccataatttgcaacagtttgtctcaaaagtcagccaacctgaagcat
aagtcttcgtcagatctgtcacttaatgatggtttctatgatcttttacaacaacctgaa
acaccggatcgtgacatcatttccctccactttgacacgctacgaaaattcctggagtcg
gttgtttctttaaaaagtgacatttctattccatcttttccccaacttggaactttgctt
caaaacgcaaaacgactcgacttaacaaccccgtccaaaatttctctcctaactaaaact
tttctatctctcctaaacctctccgagtccgctaaaacaggatacgaaaacgatgaaaaa
ttaaaatctcgcatcacagcttccgtcaatagcctcatcagtctcttcctcaatgaagtc
cttcggagccaatctcttctggacttcctccctatcttcctttgtgaggagttcattaat
ccttgtctctcttctccagtaacctgcttacaaactttaaacattttgaaagtttttctt
cacgctacaatgaacaaggttccagcaaaggccaccattgatgcctcccatccgatcctt
ccatgtcttctcctcctctgcagctccaaccaccacaacatcaggaggatcaacatggaa
agcatccaatgcgtttcttccatgaaaactaacccagtgtccagtctcatggttcatctc
acaaaacatgcagaggaattgacgtcagatcctgaatatattctacagtgttttgccaac
tatttcaatgaaaagaacaaaccagcaatcaaaaaatcaagacatggattgttgaaaaca
ttggtgcaaaatatggtcaatgaatctgcagtatcaaagctgggagttgcgtttatgact
cgatgtattaataaggttgacccttttcattttgaccccttgttgccattggttactact
tttgtcgaccaatcaaacgtgagaacactcgacgaaaacgaagctctcttaaccaccgag
tggttgcaaaaactcactccagattcattgaacgaaactttgaaacgagaattatttttc
aaagttctgacgtttcaaaccgaagacaaaagttcctatttaccacaaaatgtggttttc
aatttaatcacgaaaccattctacacatcgttatctgatgaaataaaacaacaacttatt
tcaacattacttgatattggccaatccactgctaaccccgatgtcgctaagatggtattt
aaagtttttaaggttataccattgaggtcaaattacatcataaaagaattgaagaaaagt
ttcccatcaattgacaccaaatcgactgcaccttccggtgttattgctgcaaaaagagct
cggctaagtaaatcaacaagttcagaatctggagaagtttctgaaacggaaactccaacc
tggaagagaatgatcgttttgctcgaagttcttcagcataagaagaaaattatcaaacca
aagcttttggtcgcacatctctttactgccctcaactggatgattgaccttcaaacagga
aatgatgttattgattacggcacacagctcgtactaggagctctacataatgttttcatg
attgctaaatcaaaacttggagcaaaagatgacacggatataagaaacagtttgagggtt
gagttattggtgaaatgcattcaaacatcaggcaacacacagacttgccaacatgctgtc
gtactgcttgctgaagctgcttctatttgcccggagaaacttcttcacagcgtaatgtcc
atcttcacgttcatgggaagtaacttgctgcgtcgtgatgactcgtattcgtttcaaatt
attacgaagacaattcatactgtagtacctgctctgctacagcatatggaatcagccacc
agtggtataagcaaaaacacagtgaccgatataattcgtgtgtttgtggatgctctgcca
catataccaccacatcgaaggttggttgtatttgaagaactgatcaacacattaggaggg
aacgagtatttgtggcaaaccctccttctattggtggcaagtcgtgcaaataaaattact
aaaacgtcccaagaagatgaacaggacatcttgagcggatcagaggaagatgtttttctc
ccaagtacagtggatgctctaatggaagtttgctcctccgtttccaacctcttccctgat
catcttcaattggaatccatggtccggatgttgaatttcatctcgctcgttcccgatgaa
aatgatccaaagcagaagatcgatctcaacctcccaaacctcatcgatgttccgaaacaa
tctacttcccatcttcgacgtttgcatcttgctgtcgtctcgtttgcaagccatctcttg
tcactagaggggggtatttcaaactcgtttaaactcgaaaaatccatggagcatgacgca
gcagaaaatgccacaaaaatgctgactaagtttcagagtcttttagagacggctctctcc
tatctatcacaaactacaacagctgtatcaaacacacacgatgatatgacaagcagatat
tacaggacactacaaaacagactcaactctctgcttgataagataaacaatctacttccc
tctgataccttcatgctcgtagtaagtagtattctacatgaacaatcatccaacactaca
gtgcataaagttattgagttatttaacgacagagttgcacacactaaacacacactgacc
cctgatcaggaaaatgtgttgcttcatatttctcgtcaactcattgtgttgtgcggagac
catggcaccgacaaccatggcatgcgtgccgtggcttacacaggtctgcggcacgtagca
cgaatgtgtggcatcggatgtgccacgcacctcattccaatcttatccatgatatgtgac
atcacaaaagagaaacaaccacctatacaggttatatcatctgccatgctttgtttgggt
gaattattcagcacattgaaagctcactgcattagtcacttaccaagcattgccccatgt
cattgtgatgcttcttcaccaatcaaaatcagagaaaagttaccacatgacggcatgtat
attatcagcctatcagaagttagtagacaccttaccacatttcatcagtccttacctggt
tgggtttatttcagagttgatctctgcttcacctgctgctcttga
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