Ciona intestinalis (yellow sea squirt): 100175816
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Entry
100175816 CDS
T01056
Name
(RefSeq) LOW QUALITY PROTEIN: RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100175816
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
100175816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_14
TPR_1
TPR_2
TPR_8
TPR_17
TPR_CcmH_CycH
TPR_16
TPR_12
TPR_11
TPR_10
TPR_6
ARM_TT21_5th
TPR_Slam
TPR_7
TPR_9
ARM_TT21_N
ARM_TT21_4th
ANAPC3
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
100175816
NCBI-ProteinID:
XP_026690137
Ensembl:
ENSCING00000008994
LinkDB
All DBs
Position
4:591671..602289
Genome browser
AA seq
1111 aa
AA seq
DB search
MATSVEIPLRDTDEVIELDLSQLPDGEEVLGILKQENTTLNIWLTLALEYYKQDKVQDFV
QILETARTGANLDYPNHEKDQMTCLDTLAAYYVQQARKEKNKDRRTEXFMQATQLYTMAD
KIIMYDQNHLLGRACFCLLEGDKMDQADAQFNFVMNQSPDNIPSLLGKACISFNKKDYKG
ALAYYKKALRTNPNCPADVRLGMAHCFYKLNKLDRARQAFERTLELDPTSVGALVGIALL
DLNNKDVESIRNGIKLLSKGYQIDPSCPMVLNHLANHFFFKKDYEKVQHLALHSFHNTEN
EAVQAESCYQLARSFHIQGDFDQAFQYYYQATQFASPTFVLPYYGLGQMYIYKGDEQDRE
RAAECFEKVLKAYPNNYETMKILGSIYTQSDHPDKQDLAKKHLRKVTEQYPDDVEAWIEL
AQLLERQQSTTTTGTTDGVQGALGAYGTATSLVRDRVKADVPPEILNNIAALHFRLGNLN
EAKKYYEVALKRCGEESTHDEVYYKSILVTMQYNLGRLCEEMYQFEDAVDHYKNILRDHS
NYIDCYLRLGCMARDRGQIYEASEWFKEALQINSEHPDAWSLIGNLHLAKQEWGPGQKKF
ERILKHEQTQNDAYSMLALGNVWLQTLHNPTRDKEKEKRHQDRALAMYKQVLRNDPKNIF
AANGIGAVLAHKGYIREARDIFAQVREATADVPDVWLNLAHVYIEQRQFISAVQMYENCA
RKFKRRQDPELLLYLARAYFKCGKYQECKKTLLRARHVAPHDTSVLYNTSIVLQQLATSA
LQNEKSDLKTVLGAVTELELSQGYFTYLSKNGDRMKFDLNQAAKESGKCRDLLSQAQYHV
SRARRQDEDERKMKEDQEREKSALREKQLEEERSRIRAQEEKMRALMEQRAQIQDKNKAS
MAKKMVEDEAPKKKSGGKRKQKVQDDFVNDGSSSDAIVTKKKKGDPQGKKKRKLKTKKER
GGDRQGSNDESSDEEKNPSKRSKKFSSKKQEQLSAKQKGKIKSRAYISNSDSSLSSDDNQ
PSQEGETNPAPAAELASSSDENPDQQQQDSDAGNVSSSSNENDLAHNSDQEGKEEVDGGS
GAGSDDEEVVASDDPQEDAEEQASSSDAQSD
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggccacgtcagttgaaattcctcttcgtgatactgatgaagtaattgagttggactta
tcacaactgccagatggtgaagaagttctgggaattttaaagcaagagaatacaacattg
aatatatggctcacattggcattagaatattacaaacaagataaagttcaagattttgtt
caaatattagaaacggctcgaactggtgcaaatctggattatccaaatcatgaaaaagat
cagatgacatgtttggacaccctggcagcatattacgtgcaacaggcacgaaaggaaaag
aacaaagaccgcagaactgagntattcatgcaagccacccagttgtatacaatggctgat
aaaattatcatgtacgatcagaaccatttgctcggtcgtgcgtgtttctgtttgctcgag
ggagacaaaatggatcaggctgatgctcagtttaactttgtaatgaaccaatctcctgat
aacattccatctcttcttggaaaagcttgtatttcgttcaacaagaaagattacaaagga
gcgcttgcttattataagaaggcattaaggacaaatccaaactgtccagctgatgtgaga
cttggcatggcacattgcttttacaagttaaacaagttggatcgtgcaagacaagcattt
gaacgaacacttgaacttgatccaacatctgtgggtgccttggttggaatagctctgctt
gatcttaacaacaaggatgttgaatcaataagaaatggaatcaagcttttatcaaaaggt
taccagatagatcccagttgtccgatggtgttaaaccatcttgccaaccatttctttttt
aagaaggattatgagaaagttcagcatcttgctcttcattcgttccataacacagagaat
gaggcggttcaagctgagagttgctatcaacttgctcgaagcttccatatacagggtgat
ttcgaccaagcattccaatattactaccaagccacacagtttgcatcaccaacgtttgtc
cttccatactatggtctgggacaaatgtacatttataagggtgatgaacaagacagggaa
agggcagctgagtgttttgaaaaagtattaaaagcttatccaaacaattatgaaactatg
aagatacttggctcaatctacacccaatctgatcatcctgacaaacaagatcttgctaaa
aagcatctcagaaaagtaacggaacaatatcctgatgatgttgaagcatggatcgaactt
gctcaacttcttgaaagacagcaatctaccacaaccacaggcaccacagatggtgtacaa
ggtgcattaggtgcgtatggtactgctacatcactagtgcgtgatcgggtcaaagctgat
gtaccacctgagatattaaacaatattgctgctctgcattttcgacttgggaatttaaat
gaagcaaagaaatattacgaggttgcgttaaaacgttgtggtgaagaatccacccacgat
gaggtttattataaatcaatccttgttaccatgcaatataacctgggtcgcttatgtgag
gagatgtatcaattcgaagatgctgtcgatcattataagaatatactacgtgaccactct
aattatattgactgttacttgagacttgggtgtatggctagagacagaggacaaatttat
gaagcttctgaatggtttaaagaagctctgcaaatcaattcagaacaccccgatgcttgg
tccttgattggaaatctccatcttgctaagcaagagtggggacctgggcaaaagaaattt
gaacggatattaaaacatgaacaaacacaaaacgatgcttattctatgctggctcttggt
aatgtatggctgcaaacattacataacccaaccagagataaagaaaaggaaaaacgacat
caagacagagcgcttgctatgtacaaacaagtgttaagaaatgacccaaagaatattttt
gcggctaatggaattggggcagttcttgcacataaaggatatatccgtgaagctcgagat
atatttgcacaggttcgtgaagccacagcagacgtaccagatgtgtggctgaatcttgca
cacgtttatatagaacaacgccagtttataagtgcagtgcagatgtatgagaactgtgca
cgaaaatttaaaagaagacaagatcctgaacttcttctttaccttgcaagagcttatttc
aaatgtggaaagtatcaggagtgtaaaaagacgctgctacgagcacgccatgttgccccc
catgatacatcagtgttatacaacacatcaattgtcctacaacaacttgccacctctgct
ttacaaaatgagaaaagtgatttaaaaacggtccttggtgcagtgaccgaattagaactc
tcacaaggatacttcacctacttaagcaaaaatggagatcgtatgaagtttgatcttaac
caagctgctaaggaatcggggaaatgtcgagatttgctctcacaagctcagtatcatgtg
tctcgtgctcggaggcaagatgaggatgagaggaaaatgaaggaggaccaggagcgagag
aaatctgctcttcgtgaaaaacaacttgaagaagagcgaagtagaatccgagctcaggaa
gaaaagatgcgagcactgatggagcaaagagctcaaattcaagataaaaacaaagcatcg
atggcaaagaagatggtggaagatgaagctccgaagaagaagtccggaggaaagagaaaa
caaaaagttcaagatgattttgtgaacgatggatcgagtagtgatgccattgttacaaag
aagaagaagggagatcctcaagggaaaaagaagaggaagcttaaaacaaagaaggaacgt
ggtggagatagacaaggatcaaatgatgaaagttcagatgaagagaaaaatccatcaaag
agaagtaaaaagttttcatcgaagaagcaggagcagttgtcggccaaacagaaggggaag
atcaagtcccgagcttacatatctaactctgattcttcattgtcatcagacgacaaccaa
ccatcacaagaaggggagaccaatcctgcacctgctgcagagttggcatcatcttcagat
gagaatccagatcaacaacagcaagactctgatgcaggaaacgtttcatcatcatctaat
gaaaatgatctggcacacaactctgatcaagaaggtaaagaagaggtggatggtggtagt
ggagcaggatctgatgatgaagaagttgttgcatcagatgatccacaagaagatgcagag
gagcaagcatctagcagtgatgcgcaatcagattaa
DBGET
integrated database retrieval system
