Ciona intestinalis (yellow sea squirt): 100175887
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Entry
100175887 CDS
T01056
Name
(RefSeq) uncharacterized protein LOC100175887
KO
K24929
tetratricopeptide repeat protein 6
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cin04990
]
100175887
Domain-containing proteins not elsewhere classified [BR:
cin04990
]
Other domain-containing proteins
Tetratricopeptide repeat-containing proteins
100175887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_8
TPR_17
TPR_16
TPR_9
TPR_14
TPR_19
TPR_12
TPR_6
TPR_CcmH_CycH
ANAPC3
ARM_TT21_N
NatA_aux_su
TPR_Slam
BTAD
ARM_TT21
ARM_TT21_4th
DUF5624
FAT
Motif
Other DBs
NCBI-GeneID:
100175887
NCBI-ProteinID:
XP_009860033
LinkDB
All DBs
Position
10:complement(2451848..2475209)
Genome browser
AA seq
1816 aa
AA seq
DB search
MSKLHLQQWQQYNPLDKSTVLPNVPKSNKLTYAKNDAGVSHDTLMQPKVGLTGVCPARSS
MEIENLKVMMVGSSTFDLPSTAKVKGHINEHEKKVEAKSSVVKPTNKQERLKMPAIINTE
GTTTRAPFVRRAKPPSMPRSKIKVKQKPRPNAPPNSPKGSNFKHTLSSSSFKEVLSEGKL
DTSTSATSPTNEGTVVSVEITEATTTPVRSIDDMIQTLRSSRQASGSHKSMSDVKIDEIL
QQVMSHAKEWMEEEAPTVEPQASFSLFEEEIQTSDAEEVEKKDEDVEAEDEDENQEVTIE
IDISDTVSTLASQISATAGIPDCSSILMRKSSHALRGGSSQFSATSSPAAMMQDEEEALD
YEQAVQDLHQTLDVRNDDIISIQGGIPPLIEKPAKPSSSDDEGIGSESSSEKPIPFFPTG
GRIHRLCLLPAIDEISITPREYALSKVTHAGNFTNQGDSSILAQQVQKDTRRPQFTYESS
PEFSTNDKNIEKKIEANHLDSSKLDPLDIDGWKRLVEHEMERKDYTLCGTNVQTKEWGLW
RMLWTTAPPKMALSTSAVKALVFPKYHGTISTIEVGSHSQLAKTEEQMTVMSLEEEEKTE
FNIRTLFKRHKSLSDLTQETEEKPLKKNSSIPNLAIHTEDRAHLPSMVRTSYTTAMAEVK
KQKELVLDQHKKDHMKDDSDHQLSDRSREAVNISQATIVTHAKTEQPLVSGGKEIPATDK
TSQLSLAAQAREAGRDYVVYSKRNLRSKHSKRFVLSARKSLTSYIPLHLIRSRSVDSFIT
DPVFQAISRVGRGKTKTGCLPKGKLTRTRSIPRFMEFDWFIGRHQKYSEPIEDVREWVRD
IWNTWFDELFPATSSEESSYYSEDESDDVIESREERGDVVKREHKNVPVPDTIPPAITVT
SEEIEEPEEMMRSEVERLTDDLHHLPEEQVAKKACHLSRRGTLLRKLGEIKMANEDLNEA
ISIEPRLVQAYWQRHLIKLLHNQQHEALDDLNTLLKIDKLNVDAYRSRADIFASLGDYTM
SIVNYSQAIKLDPENEETYFQRAQKFEKTGDMLLAMEDYGNVVRLNPTRTDALLRRAKFY
FKKKSWHSAVNDFTQLIEKEPLNSHARSYRGRAYAAMGQSENALVDLSAAIHLDPTNAAA
FFHRGSLLRTAAPDRALQDLSISFLLDDTEQNVLALLHRGILYSELKKYQEAMADFEQTL
RLDHSMACAHVNIGLIHLQVTDNYWEAIRRFTFAIKGDPTYTRSYVCRSDAFARINDYQS
AVRDITRAIHLQPTERHLYLRRGKLLLQLRKLKLAAFCVRHIATLEKGFVSTSPTQQAVV
QSFLGNHTAAVESLSSACRLKPKPHMYVLLSKTLMKGKRYKEAITNLKNALELSTLYTYG
ATTSTANEAPPEAAEIHFLLGQCYTEQLQHTEALQAYNQALKVNPELAEAYYQRGLCRLK
LDHSKGIQDLNRALALQPLLFEAYLSRAAYYSTKERYSKAILNCNEALRLRPKSVRALLC
RGGLKFRISAYRHALTDLSAAIELDKQCSFAYYNRAVVLQAMERYPQALMDYSIVLVLTD
ADKNSDSKSLRLRVFVNRALLYLKSNLRDARNAALDLEEATLLNPKDTYLTEAYNSYTRC
LDVDPYFLTAYVGRGDVFADAGQHDNAQGEYQRVLKLDPSNVDARVHLGYSLQVCGHLQQ
AWNQFTAAIELDPKSQSALEGRAVTCLHAGNSDAALKDVNLALRSGPPSARLLTACGVVH
QSMSDLHTAMAYYNKARSLDPTYIPGVFNCAVLYMRNRQFSEAAECLDLVLDENPDDTAA
LLNRAIAHIFLKKTEV
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagctccatctgcagcaatggcaacagtacaacccccttgataaaagcacagtc
ttgccgaatgttccaaaaagtaacaaactaacttatgcaaaaaacgatgctggtgtctca
catgatacactcatgcagccaaaagttggtttgactggagtttgcccagcaagaagcagc
atggagatagaaaaccttaaggttatgatggtgggaagttctacctttgacctgcctagt
acagccaaagtaaaggggcacataaacgagcatgaaaaaaaagttgaagccaaatccagt
gttgttaagcctaccaataaacaagaaagattgaaaatgcccgcaataataaacacagag
ggtacaaccacacgagcacctttcgttaggagagcaaagccaccaagtatgcctcgatca
aaaattaaagtaaaacagaagcctcgtcccaatgctccacctaacagtcctaaaggttcg
aactttaaacacacactttcgtcatccagcttcaaagaagttctcagtgaagggaaactg
gatacatctacttcagcaacatctccaaccaatgaaggcacggtggtgtctgtggagatc
acagaagcaactaccactcctgtcaggtcaattgatgacatgattcagacccttcgatct
tcgagacaagcgagtggaagccacaaatccatgtccgatgtcaagattgatgaaatatta
cagcaggtcatgtcacatgcaaaggaatggatggaagaagaggcccccactgttgagcct
caagcttccttttccttgttcgaggaagagatacagacaagtgacgcagaagaagttgag
aagaaagatgaagatgttgaagctgaggatgaagatgaaaaccaagaagtgacgattgaa
attgatatctcagacacagtatcaacacttgctagtcagatctctgccactgctggaatc
cctgattgttcttccatcctgatgaggaagtcctcccatgctcttagaggaggaagctcc
cagttcagtgcaacatcttctcctgctgccatgatgcaggatgaagaagaggctttggat
tacgagcaagctgttcaagatttgcaccaaacccttgatgttagaaatgatgacatcatc
agtattcaagggggaattccccctcttattgaaaaacctgcaaaaccaagctccagtgat
gatgaaggtattggaagcgaatcttcctcggaaaaaccaatacccttcttccccactgga
gggcgtattcatcgactttgtcttctcccggccatcgatgaaatttcaatcacccctagg
gagtatgcgctatcaaaggtgacccacgctgggaatttcacaaatcagggtgactcgagc
atattggcccaacaagtgcagaaagacaccagaaggccccaatttacttatgaaagttca
cctgaattttcaaccaacgataaaaacatcgagaagaagatagaagcaaaccacttggat
tccagtaagcttgatccacttgatattgatggttggaagagattggtggaacatgaaatg
gaaaggaaagattacactttgtgtggaactaatgtccaaactaaagaatggggtttatgg
cgaatgttgtggacaactgctccaccaaagatggctctttctacttctgctgtgaaggca
ttggtgttccctaagtaccatggaaccatatccactattgaagttggtagccacagtcag
ttggcgaaaacagaggagcagatgactgtgatgagcttggaggaagaagagaagacagaa
ttcaacatccggactttatttaaaagacataaatcactttctgacttaacacaagagaca
gaagagaaaccactgaagaaaaattcatctatacctaatctagccatacatacagaggac
agggcacatttaccatcaatggtacgaacaagttacaccacagcaatggctgaagtgaaa
aaacagaaggagcttgttttagatcaacataaaaaagatcatatgaaagatgattctgat
caccaactatccgatcgatcacgtgaagctgtcaatatttcacaagctacaattgtaaca
catgcaaaaacagaacaaccacttgtaagtggtggtaaagaaataccagcaacagataaa
acatctcagttaagtttagctgcccaagcaagagaagctgggagagattatgtcgtctat
agtaaacgtaacctgcgatcaaagcatagcaagcgctttgtgctcagcgctcgtaaatct
ctcacctcgtacattcctcttcatttgatccgctcaagatcagttgattcctttatcact
gatcctgtattccaagcaatatccagggttgggagaggaaaaaccaaaacaggttgtctt
ccaaagggaaaattgactagaaccaggagcattccacgattcatggaatttgattggttc
attggaaggcatcaaaaatattctgaaccaatagaagacgttcgtgagtgggtgcgtgat
atatggaacacctggtttgacgagctctttcctgcaacatcttctgaagaaagctcttat
tactccgaggatgagagtgatgatgtcattgagagcagggaggaaagaggagatgtggtg
aagagagagcataaaaatgttcctgtgcccgacaccatccctccagctataactgtcacc
tctgaagagattgaggaaccagaagaaatgatgaggtcggaagttgagaggctcacagat
gatctgcatcaccttccggaggagcaagtggcaaaaaaagcgtgtcatctttcaagacga
ggaacattgcttagaaaactcggagaaataaaaatggcaaatgaggacctgaatgaagca
atttcaatagagcctcgattagtgcaagcctattggcagagacatcttattaaacttttg
cataaccaacaacatgaagcacttgatgatttaaacactttattaaaaattgacaagctc
aatgtagatgcttacagatctcgtgcagatatttttgcctctttgggtgattacacaatg
tctattgtaaactatagtcaagcaattaaacttgatcctgaaaatgaagagacttatttc
caacgtgctcagaagtttgaaaagacaggtgacatgttgttagctatggaagattatgga
aatgtagttcgtttaaatccaacaagaacagatgcgttacttcgtcgcgcaaagttttat
tttaagaagaagtcttggcattctgctgttaatgattttacgcaacttattgagaaggaa
ccgcttaattcacatgcaagatcatataggggcagagcatatgcagccatgggtcagagt
gagaatgctctggttgacttatcggctgcaatacatctcgacccgaccaatgctgctgct
tttttccaccgggggtcactgttgagaacggcagctccagacagagcattacaagatcta
agcatctcgtttttgcttgatgatactgaacaaaatgtcttagcattactccaccgaggt
atattatactcagagttaaagaaatatcaagaggcaatggctgactttgaacaaacactt
agacttgaccattcaatggcatgtgcgcatgtaaacatcggactcattcatctgcaggtc
acagataattattgggaagcaattagaagattcacgtttgccattaaaggtgacccaaca
tatacgaggtcttatgtttgtcgatctgatgcttttgcccgtataaatgattatcaatct
gctgtccgtgacattacaagagccatccaccttcaaccaacggaacgtcatttatatctc
agacgtggaaaactccttttgcagctgaggaaacttaaacttgctgcattctgtgtaagg
catattgctacactggaaaaggggtttgtttccacctcacccacccaacaagctgtcgtt
caatctttccttggcaaccacacggcagcagtagagagtcttagttcagcatgtagatta
aaaccgaagcctcatatgtacgtcttgctgtctaagacacttatgaagggaaagagatat
aaagaagcaataactaacttgaaaaatgcattggaactttcaaccttgtacacatatgga
gcgaccaccagcactgcaaatgaagcaccaccggaggcagcagagattcatttcctatta
ggacaatgttacaccgaacagttgcaacacacggaagcattacaagcttataatcaagct
cttaaagtaaaccctgagttagcagaagcatactaccagcgtggtttgtgtcggttaaaa
ctcgatcattcaaaaggaatccaagatttgaatcgagcacttgcccttcaacctttatta
tttgaagcttatcttagcagagcggcttactatagtactaaggagaggtacagtaaggca
atattaaattgcaacgaagcattacgtcttcgtcctaaaagtgttcgtgcgttattatgt
cgtggtggcctcaagtttcggatcagcgcttaccgtcatgctctgacggacctctctgct
gccatcgagttagacaagcagtgctcatttgcatattacaacagagctgtcgtgctgcaa
gcaatggagagatacccacaagcactaatggattacagcatcgtgctcgtgctcactgac
gcagataaaaactcggattcaaagtcacttcggctccgagtttttgtgaaccgagctctt
ctttacctgaagagcaatctaagagatgcgagaaatgcagctcttgatcttgaagaggcg
actcttcttaatccaaaagacacttacttgacagaagcctataactcctacacacgttgc
ttggatgtggatccatatttcctcacagcttatgttggtcgaggggatgtattcgctgat
gctggacaacatgataatgcacaaggagaataccaacgtgttcttaaacttgatccttca
aatgttgacgcgcgggtacatctggggtacagtttgcaagtatgtggacatctgcaacaa
gcatggaaccaattcacagcagcaattgaacttgatccgaaaagtcaatctgcattagaa
ggtcgcgctgtgacatgccttcatgcaggcaacagtgatgctgcattaaaagatgtcaat
ctagctttaaggagtggccctccttctgcaagactgttaactgcatgtggagtggtacat
cagtctatgagtgacttgcacacggcaatggcttattataataaagcaagatcattggat
ccaacttatattcctggtgtgtttaactgtgctgtgctatatatgaggaacagacaattc
tctgaagcagccgagtgtttagatttggtgcttgatgaaaatccggatgatacagctgct
cttcttaaccgggcaatcgctcatatattccttaagaaaacagaggtttga
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integrated database retrieval system
