Ciona intestinalis (yellow sea squirt): 100175891
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Entry
100175891 CDS
T01056
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100175891
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100175891
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
Helicases
100175891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100175891
NCBI-ProteinID:
XP_002130371
Ensembl:
ENSCING00000004789
LinkDB
All DBs
Position
10:complement(2585721..2600598)
Genome browser
AA seq
816 aa
AA seq
DB search
MSGEEMDALSESEDDTDITIDEVPGTNKKTQNDVNELLSILDDGYTSEAELNTRKLVTQM
NRKKKKSGGFQSMGLSHSVFKGVIRKGYKVPTPIQRKCIPLILSDKDVVAMARTGSGKTA
AFLIPMFEKLQGAQSGAGARALLLSPTRELALQTLKFVKELGRFTSLRTACILGGDSMDE
QFSAMHENPDVTIATPGRLMHVLIEMELRLSNIHYVVFDEADRLFELGFQEQLHEVLHRL
PDDRQTLLFSATLPKQLVEFAKAGLNDPTLVRLDLDSKLSDQLKLAFLHLREDDKLPALI
HLLRNVFKETEQTVVFVSTKHHVEFVKDVLKLFSINCSYVYSSLDHTARKINIAKFRNKK
TMVLIVTDVAARGLDIPMLDNVINFSFPAKSKLFVHRVGRVARAGRTGTAYSLVCPEELA
YVIDLHLFLGRPLNFAKTGQTYQAWDNVYGRVSQRIIDEEQAALQNIKNNSDLQALLKVA
QNAYKQYLKSRPAASSESIKRSREILQSTNIALHPIYDESGDTSEEARLELLSSVRKYKP
NSTIFEIGATAKSTGSYVMKKTRKRHVKFVEKHQQKLRKLAEKDEVSALQVKENIPEVVN
EEEEEDLKNTFSKIVRPTNNIREFTEMKKKKKKKRTAKDFKDSEFYIDYKPKDHNTEAGL
SIGNGRTNFAKEASNVTLDLIGDEDKTLRQQKMQRKVWDRKKKRFVNAQDAGPTAPKKKI
RTESGALISSTYKKNIYQEWKKKTKLADRDEEVYTGDGTSGRWRAGQNRRLSGKQQNSNS
KIKSELKRPEQILKQRKLQAQKKKNQQKRRKPKGRR
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagaagagatggatgcgctttcggagagtgaagatgatacagatatcaccatt
gatgaggtgcctggtacaaataagaagactcaaaacgatgtgaatgagctcctctcgatc
ctggatgatggatacacatcggaggcggagcttaacacaagaaagttggtcacgcagatg
aacaggaagaaaaagaagtccggaggtttccaatccatgggtttatcacattcagtgttt
aaaggagtaatccgcaaaggttataaagtaccaactcctattcaaaggaagtgtattcca
ctcatactaagcgacaaagatgtggttgccatggctcgtacagggagtgggaagacggct
gctttccttattccgatgtttgagaaattgcaaggtgcacaaagtggtgcaggggcaaga
gcacttctgctttctcccacaagagaactggcattgcagacacttaagtttgtaaaagag
ctcggaagattcacttctttgcgtacggcgtgtatacttgggggtgacagcatggatgag
cagttctcggccatgcatgaaaaccccgatgtcaccattgccacccccggtcgtctcatg
cacgtccttatcgaaatggaactcagattatcgaacatccattatgttgtgtttgacgaa
gcggacaggttatttgagcttggtttccaggagcaactccacgaggtcctccaccgtctc
cctgatgatcgtcaaactcttcttttctcagccacactccccaaacaacttgtggagttc
gcaaaagccggtttaaacgaccctacactagtccgacttgatcttgactcaaaacttagt
gaccaactcaagctagcgttcctgcatcttcgtgaagatgacaaactcccagctttgatt
catctcctccggaacgtgttcaaggagacggagcaaaccgtcgtttttgtttcgacgaag
catcacgtggagtttgtaaaagatgtccttaagttgttcagcatcaactgctcgtacgtt
tacagtagtcttgaccatactgctcgtaaaatcaacatcgcaaagttccggaacaaaaag
acaatggtgctcattgtcacggatgttgcagcgagaggactggacatcccaatgctcgat
aacgtcatcaatttctcattcccggcaaaatcgaagttatttgttcacagagttggtcgt
gtagcacgagcgggacgcacaggtaccgcttactccctcgtgtgtccggaagaacttgct
tacgtcatcgatctccatcttttccttggacgacctttgaattttgcgaaaactggacaa
acttatcaagcatgggacaatgtatatggtcgcgtgtcacagaggatcatagatgaggaa
caagctgctctgcagaacattaagaacaattctgatctccaagctttgcttaaagttgca
cagaatgcatataaacagtatttaaaatcacggcctgctgcttcaagcgagtcaatcaaa
cgatcacgagaaattcttcaaagtactaatattgctctgcacccaatttatgacgagagt
ggtgatacatcggaagaagcaagactagagttactttcatctgttcgaaaatataaacct
aattctacaatctttgaaattggggcaacagcaaagagcacgggttcatatgttatgaag
aagaccaggaagaggcatgtcaagtttgttgagaaacatcaacagaaactgaggaagctc
gctgagaaggatgaggtgtcagctcttcaggtcaaggagaatattccggaagttgttaac
gaagaggaagaagaagatctcaagaatacgttctcaaaaatagtccgacctaccaacaat
atcagagagtttactgagatgaagaaaaagaagaagaaaaaacgaacagctaaagatttt
aaggattccgaattctacatcgactataaaccgaaagatcataacacagaagcgggtttg
agcatcggtaacggtcgaactaactttgcaaaggaagcttcaaacgtgacattggatctt
atcggagatgaagataaaacactccgccaacaaaaaatgcaaagaaaagtttgggatcgg
aagaagaagaggttcgtcaatgctcaggatgcgggaccaactgctcctaagaagaagatc
aggactgagagcggtgcccttatatcctccacttacaagaagaacatataccaagagtgg
aagaagaagaccaagttggctgatcgtgatgaagaagtctatactggggatggaacaagt
ggaagatggagagctggtcaaaataggagactaagcggaaagcaacaaaattcaaactct
aaaataaaatctgaactaaaacgaccagaacaaattttaaagcagcgtaaattgcaagcg
caaaaaaagaaaaatcaacaaaaaagaagaaaaccaaaaggcagaagatga
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