Ciona intestinalis (yellow sea squirt): 100175926
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Entry
100175926 CDS
T01056
Name
(RefSeq) DDB1- and CUL4-associated factor 1 isoform X2
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cin01001
]
100175926
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
100175926
Enzymes [BR:
cin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
100175926
Protein kinases [BR:
cin01001
]
Serine/threonine kinases: Other
Other
100175926
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
100175926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LisH
WDR55
Beta-prop_EML_2
WD40_Prp19
Motif
Other DBs
NCBI-GeneID:
100175926
NCBI-ProteinID:
XP_002123152
Ensembl:
ENSCING00000007463
LinkDB
All DBs
Position
8:4589381..4603151
Genome browser
AA seq
1517 aa
AA seq
DB search
MAAATAPTATDDAKTYLSEIMEELNQLESTEPGSEPVSILTKLSERVEKETEDFHKQDPD
PFDDRHPIYIIPNCSFGKFLKVLTKHHSQFLDKVINTYLHSTTNPDDNETSLRSVSARFL
LGVMPGLDMTKIFSSNTEAFTLLERWIKTKPEPLCTYATGIYSYLLEHHEICSQRHSESS
ALVPILLRRLWNLIEPGKYPENEQSETTKCDLQPKQPETTSCNQTDTTSNPVKNSSVKKR
KLSATEECSKAKKEKHETKTLHNKNQTENNVGSSIESPLSSPVQKKKKDFISLPLMNEIM
DSEVSNSSWVDMMPIVIGCSYSLAPPLSSSVCERYILNFLTPLGEYQDLLSIFLELKALD
LVRHYLEKSITNDGLLTFSALRFFASLLCHNKIAAEFVENLGVQRLLSVIRPSMGATGVS
ICLYYLAYNRDAMDRICQLPSKVLLNLVKYTAWLLECSHESGRCHAALFFSISFQFRIIL
KLFDQQNALRKLLNVLSTLPIISGDGDINVTDEENQYTYRQAARTTCATLRKYFETHLLI
KVKMVKQQLQVQEDTSRHTSQSKVIDCDRENVLEYLDFLLGLEQTYSAIPPSVLVNWHPV
QSFMTLDGVKLLLKLIAITCEWSNYNGKAETLRSALDCLAVVTLSTKAQLQLCETINIPD
SSTPETGISILLNVAEGESYTGIEPEPQKSALAVIVNCVCGPQYKFEGTVGRVVNTTPQN
RSVSKFIDEARRKLWECVKTNNGIKILLHLLTITHPAVHADDLRLLACKALCGLCRCETV
KQIASMLPMFNNGQLQALTRQPVMQDRKKQHARFCKYMEELTEQVSGKPSAFRMDLESLR
KAHIVSQTVIRYDNRELLQLIHNHLQWSGLHSSAASLAKEALLNTPTTFSPSVLSTPKNL
VRHALTGGAGDASTPASRKISFNRGTHAHGSTPALPPHSSVMCTPTQKKMKFRNRLENGQ
TTEPSGMDIQKYRLSSNGRVTVVEPGLLGADKDSHTPTLNTIVADFLKSQHAHCENPVVT
VPEFSLTRSHCCPKPLYRAEAPINIASRYFRRQITPRWGGVGGCARDRQFIYSRFRPSFV
FRPPDQENVPYTCCAFMPDDLSLAVGNFQGDITFHSLDTEQDRVIENCANAPIVCLEPSR
DGERLLTVAEGVFSNPCTMFNVENMESKFNYRGAYHVEFSKTTQDRVIGTKDSSALIYDA
ATGQIIQTLEKVNLAKQYTCNKATFSPNDDLVLSDGLLWDPRVSSTEPIHKFDKFNSSMS
GIFHPRGTEVIINTEVWDLRNYHLLRTVPYIDQCTLHFNRDSTVMYAAKSLSHLEMEDID
ENDDSSPGSTTFLAIDAQNYRPLSVTDTKHKIYDFAADGKDCNLAVIERQQHSDDNNEDE
RISVCRLYEVGKVRGDDDEEDDFMVEENNDEDDGNDDDDDNSSQSSDDMSSHSGDDQMGR
FLRRRRDRRRWRRRRRERQRRSGSSGSESENENGDGSRGSESDDWQDDDVSLSGLSVGSF
GQDTSSGGSNGFFDMFE
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgcaactgcaccaacagccacggatgatgctaaaacatatctcagtgaaata
atggaggaattaaatcagttagaaagcactgaacctggatctgaacctgtatcaattcta
acaaaactttctgaacgagttgaaaaagaaactgaagattttcataaacaggatccagat
ccatttgatgatagacatccaatttacatcatacccaactgttcatttggtaaattcctt
aaagttcttaccaagcaccatagtcagttcttggacaaagtaatcaacacatatttgcat
tcaaccaccaatcctgatgataacgagacatcacttcgttcagtgtcggcacgttttctt
cttggtgtgatgcctggtctggacatgacaaaaatcttttcatcaaatacggaagctttt
actttactggagcgttggatcaaaacaaaacctgaacctctatgtacatacgccactgga
atatattcttatttgttggaacatcatgagatatgttcccagcgtcatagtgaaagttct
gcattggttccaattctattgcgccgcttatggaatttaattgagcctggaaaatatcct
gaaaatgaacaatctgagacaacaaagtgtgatttgcaaccaaagcaaccagaaacaact
tcttgcaatcaaactgacacaacatccaaccctgtaaaaaactcaagtgttaaaaagcgg
aaactgtctgctacagaggaatgcagcaaagcaaaaaaagaaaaacatgaaacaaaaacc
ttacataacaagaatcaaaccgaaaataacgttggttcgtcaatagagtcaccattatca
tcaccagtacagaaaaagaaaaaggattttataagtttgccgttgatgaatgagataatg
gatagcgaagtcagcaatagtagttgggttgacatgatgccgatagttattggatgttcc
tacagtctcgcacctcctttatcttcaagtgtttgtgaacgatatattcttaacttctta
actccacttggtgaatatcaagatcttctctcaattttccttgaactaaaagctcttgat
ctggtcagacattatcttgaaaaaagtataactaacgatggcttgctaacgttctctgct
cttcgattttttgcttctcttctttgtcacaacaagattgctgcagaatttgttgaaaat
ttaggagttcaacgccttctgtcggttattcgtccctccatgggtgctacaggtgtttct
atctgtctctactatcttgcttataaccgagacgccatggatagaatttgccagcttccg
tctaaagttttgcttaacttggtcaaatacacagcatggctccttgaatgctcccatgag
tccggaagatgccacgctgctctcttcttctccatttctttccaattccgaatcattctc
aagttgtttgaccaacagaatgctcttcgtaaactcctaaacgtgctgagtactcttccg
atcatcagtggagacggggacatcaatgtaactgatgaggagaaccagtatacgtatcgt
caagctgcacgcactacatgtgcaacattaagaaaatactttgaaactcaccttcttatt
aaagtaaagatggtgaaacaacaattacaagttcaagaagacacttcacgtcatacgagt
caatcaaaggtgattgattgtgatcgcgaaaatgttcttgaatatcttgacttcttgctt
ggcttggaacaaacttactcagctattcctccatctgtgcttgttaactggcacccagtg
caatccttcatgacactggatggggttaaattacttctcaagttgattgcaatcacatgc
gagtggtccaactacaatggtaaagcagaaacgttacgttctgcacttgattgccttgca
gtggtcactttatccaccaaagcacaattgcaactttgtgaaacaatcaacattccggat
tcttccacgcccgaaactggtatcagcatcttgttaaatgtagcagaaggagaatcatat
acaggaattgaaccagaacctcaaaaatcagctctggctgtcattgtgaattgtgtgtgt
ggtcctcagtataagtttgaaggtacagtgggtagggtggtaaacacaactcctcaaaat
cgatcggtctccaagtttattgatgaagcaagaaggaagttgtgggaatgtgtgaagact
aataacggaatcaagatcctgctccatctcctcaccatcacccaccctgctgttcatgct
gatgatttgaggttactagcatgcaaggccttgtgtggtttgtgtcgatgtgaaacagtg
aaacagattgcatccatgcttccaatgtttaacaatggccagctacaagcattgacgaga
caaccagtgatgcaggatcgaaaaaagcaacacgcgaggttttgcaaatacatggaagaa
ctaacagaacaagtatccgggaagccgagtgcgtttagaatggacctggaaagcttaaga
aaggctcacattgtttcacaaaccgtgatacgttacgataatcgcgagttgcttcagctc
atacacaaccatctacaatggtctggtttacattcaagtgcagcatcattggcaaaggaa
gctttactcaacacaccaaccacattcagtccatctgtgctttcaactccaaagaatctt
gtccggcatgcactcactggaggtgctggagatgcatcgaccccagcaagtcggaaaatc
tcctttaacagaggaacacacgctcatggttcaaccccagctttaccccctcattcctct
gttatgtgcacacctacacaaaagaaaatgaaattccgtaaccgattagaaaatggtcaa
actaccgaacccagtggtatggacattcagaaatatcgattatcatcaaatggacgagta
actgtagttgaaccaggtctcctaggtgctgataaagattcccacaccccaacacttaac
acaatagttgctgacttccttaaatcacaacacgcacattgtgagaaccctgttgtgacc
gtgccagaattctctttaacaaggtcacactgttgtccgaagcctttgtatcgagcagaa
gctccgataaacattgcatcgagatattttcgacgtcaaatcacccccagatggggtggt
gtggggggttgcgctcgtgatcgacagttcatctatagcaggtttcgaccgagttttgtt
ttccgaccacctgaccaagagaatgttccttacacatgttgtgcattcatgcctgatgac
ctgagcttagcagtcggcaatttccaaggagacatcacgtttcatagcctcgacacggaa
caggacagagtgattgagaattgcgctaatgctccaattgtttgtcttgaaccttcaagg
gatggggagaggttactaacagttgcagaaggagtgtttagcaacccatgcaccatgttt
aatgtggaaaatatggagtcaaagtttaactatcgtggtgcgtaccatgttgagttttcc
aagaccactcaagatcgagtgattggaactaaagattcatctgctctgatttacgacgca
gccactggccaaattattcaaaccttagaaaaagtgaaccttgcaaagcaatatacttgt
aacaaagctactttttcaccaaatgatgatcttgtcctatctgacggcttgctttgggat
cctagagtcagttctactgaaccaatccataagtttgataagtttaactcgagtatgtcg
ggtatttttcacccacgaggaacggaagtaatcatcaacacagaagtttgggatttgagg
aattatcatttgctacgaacagttccatacatagaccaatgtactttgcattttaacaga
gacagcactgttatgtatgctgcaaaatcactgagtcatttggagatggaagatatagat
gagaatgatgattcaagtccaggatccacaaccttccttgctatcgatgcacaaaactat
cgaccactcagtgtaactgacactaaacataaaatatatgactttgctgctgatggaaaa
gattgtaatttagctgttattgagcgtcagcaacattcggacgataataacgaagacgaa
agaattagcgtttgtagactttatgaagttggtaaagttcgaggtgatgatgatgaagaa
gatgatttcatggtagaggagaataatgatgaggatgatgggaacgatgacgatgatgat
aacagctcccaatcctccgatgacatgtcctctcactctggagatgatcagatgggtcgc
tttctcaggaggagaagagacaggaggaggtggaggagaagaagaagagaaaggcagagg
aggagtgggagcagcgggagtgagagtgagaacgaaaatggggatggaagtcgtggaagt
gaaagtgatgattggcaggatgatgatgtttccttgtccggcttaagtgtgggttccttt
ggtcaagacactagtagtggcggctctaatggtttctttgatatgttcgaataa
DBGET
integrated database retrieval system
