Ciona intestinalis (yellow sea squirt): 100175958
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Entry
100175958 CDS
T01056
Name
(RefSeq) vacuolar protein sorting-associated protein 54
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cin01009
]
100175958
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100175958
Protein phosphatases and associated proteins [BR:
cin01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100175958
Membrane trafficking [BR:
cin04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
100175958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
Nepo_coat
Motif
Other DBs
NCBI-GeneID:
100175958
NCBI-ProteinID:
XP_002125675
Ensembl:
ENSCING00000006576
LinkDB
All DBs
Position
Unknown
AA seq
838 aa
AA seq
DB search
MNDGTLKLQSAAKFDQKQQALRKSCATLKSIPKIFLHKDFSMMIPTTFASVLTSQDATNS
RKESSSSKLLQEKLSHYLDMVEVAIARQISVQSEAFFKAMSFHEKLHEYLNSTLVKTQQL
LLKTQQIRSAIVTCSLRVVQLHRERMNSADLLTKLHLMVTVHQTQPTIQLLLSTNEYAGS
LDLIRTTQDVLQQELNGIQCFRHLGCQLTEMERVIGQMMKQEMEDCFRIEINRPMSDGHM
CSQPHRVTAVTLGLLRLGHFDFIDSYREEIESSVKRIIKDIVCDAVNQHCDVIMEHETLA
AKMRMLDFKSWVEMLDCVFDALIVFVRRMKTFIELVSEVGLASVERGDTYRSSRRKHKVE
PRVVDVSTNHVEYDDSNNLFIGESMDDLASYEDELVATAAHCYVTEDDQQSSQSSEQNEA
ETTSNCSEETISSEDFEKLSKVLRSTLCWVVGFQHDRCVKILLAKGKDNSLDKLKSSEFL
VLAKSVKRYTNEADALIATSCGDNGINGPLGGAIQSQASRFISRFHDERKNKLSLILDNE
VWKQAEVPPELSLLLQNLVDGKLSSSENEVTRSEDPTSSKSCELLVLDGRRFAVVGTVLM
LMKMVSEYCRCCDDLPMSATDLVHRLRDLLTFFNSRTCQLVLGAGALQLVGLKTITTKHL
SLASQCLELVLYCLPSIRTHFESQLMKVHHVNDDHMKHKAVLRHFDHVTRIYQEHIMEIE
NKLLAIVENVVTRNIKKWEVKAPVPSSTMRNICKQICKFHETIRVLLPEKQTKGILIRLN
KEFKRQIHDSLTQWNIRNDGGPQHGLVAADLKYYELSIKGLPGIENVELLLQTVWDAV
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatggaactttaaaacttcaatctgccgcaaaatttgaccagaagcaacaagct
ttacgcaaatcctgtgcaactttaaaatcgatcccaaaaatatttctccataaagatttt
tcgatgatgattccgacaacgtttgcgtcagtgcttacctcgcaagacgcaacaaactcg
agaaaagaaagttcgtcatcgaaattgttgcaggaaaagttgagtcattaccttgatatg
gttgaggtggcaatcgcgcgacaaatatctgtccaatcagaagctttctttaaagcaatg
tccttccatgaaaaacttcacgaatatctcaattcaacgctggtgaaaacgcaacaactt
ttattgaaaactcaacaaatacgttcggccattgttacttgctcgctaagggttgtccaa
ctacacagagaacgaatgaactcggcagacttacttaccaaactccacctaatggtgaca
gtccatcaaacgcaacctacaatacaacttttattatcgacgaacgaatacgctggttcc
ctcgaccttataaggacaacccaggatgttttgcagcaggaactaaacggaatccaatgt
ttcagacaccttggatgtcagctgaccgagatggagcgtgtgattggtcaaatgatgaag
caggagatggaggattgtttcagaattgagataaatcgaccaatgagtgacggtcatatg
tgctcgcaaccccatcgtgtgacagctgttacgcttgggttgttacgactcggacatttt
gatttcattgatagttacagggaggaaattgaatcaagtgttaaacgaatcatcaaagat
atcgtttgtgatgcggtaaaccagcattgtgacgtcatcatggagcatgagaccttggct
gccaagatgagaatgttggattttaaatcttgggttgaaatgttggattgtgtgttcgac
gcattgattgtatttgtaagacgaatgaaaacctttattgagttggtgagtgaggttggt
ttagcgtccgttgagcgaggagatacgtatcgtagttcgcgtcggaaacataaagtggaa
cctcgtgttgtggatgtttcaaccaaccacgttgaatatgatgattcgaacaaccttttc
attggagaatccatggatgacctcgcaagttacgaggatgaattggtggcaactgccgca
cattgttacgtcacagaagatgatcaacaatcatcacaaagttctgaacagaatgaagcc
gaaactacatcgaattgttcggaggaaacgatttcaagcgaggattttgagaaattgtcg
aaagttttgcgttcgacgctgtgttgggtggtggggttccaacatgacagatgcgtcaaa
atcctccttgcgaaaggaaaagataattcacttgataaacttaagtcgagtgaattcctg
gttctcgcgaagtcggtcaagcgttacacgaacgaggccgatgcgctcatcgctacttcg
tgtggagataatggcattaacgggccactaggaggggcaatacaaagtcaagcttcaagg
tttatttcaaggtttcatgacgagaggaaaaataaactttcgttaatattggataatgaa
gtgtggaagcaggccgaggttccgcccgaactttcacttttgcttcaaaacttggttgac
gggaagttatcgtcgagtgagaatgaggtgacaaggtccgaggatccaacgtcgagtaaa
agttgtgagctgttggttttggacggacgaagatttgccgtggttggtaccgtgcttatg
ttgatgaagatggtgtcggagtattgtagatgttgcgatgacctcccaatgtcggcaacg
gatttggttcatcgacttcgtgacctcttgaccttctttaactctcggacatgccagctg
gtgttgggcgctggagcgttacagctcgttgggttgaaaacaatcaccaccaaacacctc
tcgcttgcttcacaatgtttagagcttgttctatattgcttgccttcaatacgaacacat
ttcgaatcacaactcatgaaagttcatcacgtgaatgatgatcatatgaaacataaagct
gtgttgcgacattttgatcatgtgacgaggatataccaggaacatatcatggagattgaa
aacaaattgttagcaattgttgaaaacgttgtgacgcgaaacattaagaaatgggaagtg
aaggcacccgtcccatcttctacaatgagaaacatttgtaaacaaatttgtaaattccat
gaaacgattagagttttactaccagagaaacaaacaaaggggattcttattcgattaaac
aaagaatttaaacgacaaatccacgattcacttacacaatggaatatacgtaacgatgga
ggcccacaacatgggttagttgcggcggatcttaagtattatgaactgtcaatcaagggg
cttcctgggatcgaaaatgtcgaacttttacttcaaactgtgtgggacgccgtctag
DBGET
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