Ciona intestinalis (yellow sea squirt): 100175966
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Entry
100175966 CDS
T01056
Name
(RefSeq) glial fibrillary acidic protein
KO
K07606
vimentin
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100175966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100175966
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cin04812
]
100175966
04147 Exosome [BR:
cin04147
]
100175966
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
100175966
Cytoskeleton proteins [BR:
cin04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
100175966
Exosome [BR:
cin04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100175966
Exosomal proteins of other cancer cells
100175966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
CENP-F_leu_zip
Myosin_tail_1
TPR_MLP1_2
Baculo_PEP_C
ATG17_like
MscS_porin
APG6_N
Nuf2_DHR10-like
DUF2576
Laminin_II
DUF7491
She9_MDM33
DUF16
SHE3
DUF6376
Uso1_p115_C
FlgK_D1
BLOC1_2
Tup_N
DUF6212
Prefoldin_2
YwqH-like
Spectrin_Anc-1
KASH_CCD
Phage_GP20
PUMA_CC
Laminin_I
FlxA
Virulence_fact
V_ATPase_I
LemA
Spike_torovirin
Crescentin
Zw10_N
NPV_P10
DUF7603
ATG16
UPF0242
Motif
Other DBs
NCBI-GeneID:
100175966
NCBI-ProteinID:
XP_002119136
Ensembl:
ENSCING00000008941
UniProt:
F6Q6Q9
LinkDB
All DBs
Position
3:5307344..5311911
Genome browser
AA seq
438 aa
AA seq
DB search
MQSPAGQSGQSSSYRVVTSSRTTTSSSNNAAGSPLRLGDIQPQGRMSYGMYSSSYDGGYS
GGVGSVYVSDKDLQDLGGEQGVQFRNMRSGEKEELKGLNNRFASYIERVRFLEQQNKLLE
AQLRQLSVKYESKLGELYASEVRRLKAIIDSLNTDKALIDAELDHMRQDVTDLRREHDTS
VSEREELERELNNLRGNVDECTISRVDLERQLMTLREELDFENLAHTEIVNELKSQLVTD
HVRVQVDTHGPDLSDLLRDIRAQYDLAAKRNREESEEWYSGKLNDLNAKVSQDANRLKDA
QGELSEMRTRVGTHTTQIESLRSNKDYLERQLADVEERFSRDINGYQDQIAELQSQLEKI
KAEMAERLREYQDLLAVKLGLDFEISTYHKLLEGEEFRLQGVSPGLSSGGTTYSLRKVVE
EYESAYKNAQSKSGRKSP
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcaccggcaggacaaagtggacagtcgtcttcatacagagttgtgacttcatcg
cgaacaacaactagctcttccaacaacgctgcaggttctccacttcgactcggcgatatt
caaccccaaggaagaatgtcttacggtatgtactcatcaagttacgatggcggatacagc
ggaggtgtaggatcagtgtatgtaagtgataaggacttgcaagatcttggtggtgaacaa
ggcgttcagtttagaaacatgagatctggagagaaagaagaactcaagggcttgaacaac
cgattcgcatcctacatcgagcgagttcgtttccttgaacaacagaacaagttgctcgag
gctcagcttcgtcagctttccgtgaaatacgaatctaagctgggagagctttatgccagt
gaggttcgtcgcttgaaggccatcatcgactcgttgaacactgacaaggcactcattgat
gctgaacttgatcatatgagacaggatgttactgatttgagaagagagcacgacacgtca
gtaagtgaacgtgaagaacttgaaagggaattaaacaatttgagaggaaatgttgacgaa
tgtacgatcagccgtgtggatttggagagacagctcatgacgttgagagaagaacttgac
ttcgaaaaccttgcccacactgagatcgtgaacgaactcaagtcccaactggtcaccgac
cacgtaagagtccaagtagatactcatggacctgacctatccgatctcctccgtgacatt
agagcacaatacgacctcgctgcgaaacgaaacagagaagagtcggaagaatggtacagt
ggaaagttgaacgacctgaacgctaaggtttcccaagatgccaaccgtcttaaagacgca
cagggagaactgagcgaaatgagaacccgcgtcggcacacacaccacgcaaattgagtcc
cttcgttccaacaaagattacctggagagacaactcgctgacgtggaagaaagattcagt
cgcgacataaatggttaccaagatcaaatcgcagaactccagtctcagttggagaagatc
aaagccgagatggcggagagacttcgagaataccaagacctgctggcggttaaactaggt
ttggacttcgaaatcagcacataccacaaactgctggaaggcgaggagttcagactgcag
ggggtgtcgcctggtttgagcagtggtggaacaacctactcgctcagaaaagtcgtcgaa
gaatacgagagtgcatacaaaaacgctcagtcgaagagtggaagaaaatcgccttga
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