Ciona intestinalis (yellow sea squirt): 100175979
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Entry
100175979 CDS
T01056
Name
(RefSeq) DNA mismatch repair protein Mlh3-like isoform X1
KO
K08739
DNA mismatch repair protein MLH3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100175979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cin03400
]
100175979
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
100175979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
HATPase_c_3
DNA_mis_repair
HATPase_c
TSLP
WW
Motif
Other DBs
NCBI-GeneID:
100175979
NCBI-ProteinID:
XP_026689817
LinkDB
All DBs
Position
4:3714688..3718641
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AA seq
772 aa
AA seq
DB search
MQGASTASNLHHHPATVQSQLRSGVAITSVSQCVEELIANSIDANAKTIGIFVDLKKYYV
QVTDNGCGFSKYNLFKSARRYATSKCPDSENFKFNLAHYGYRGEALASMAELSSNVSIIT
CMKGDGSPYSKTISSFGTKHSDIQTHVATKQQQGSTVTVSGLFSNMPVRRKYMDDDIEAE
QIRKTVCNLALSNLEVTFTLNVLESAHTLRLSRTTDPLIRSSLKCLCNGRNHLANNVSFR
LNTIHDSVASQNFQTISTTNGKLHIDAYLSETGHRNKSIQYVYVNRRLVLKTKIHKLLSE
LTNQSQRDDSDVKGIISSPAYVIYLKCPYKWYDISLAPGKTMVEFRNWNFILSAVRKLFC
KAKNIPWISVETPANFKSESMDINTATDLVCVMGRAVGTTRPCDFTNAKSTSPNGNTTQN
CPFTEQDQNKHTELPKDWVTMFSQNLGRTVFFNTKTGCSSLTKPTLARSTEINLNKRGIG
LNKVLVPISKTPRLSANLLQSTQKTVKKPMPSVRVDNVTVFRPQQQNTTAHPTFFQGIYT
EVKLTKEVLTKLKVIGQFGNKFIACSVGCTTDSRGMLLLVDQHAAHERVRLESFISDAYE
SSKRINLKTSKLESKVEINLTKTQTAAVRNHPEVFYTCGLRFDSDLNTEDDLVTVNSIPS
LLTTSGTLKETIENLIEERTQALYVNRGVSDSMSPVLFQLLCSKACHGAIRFGDPLALEQ
CTELLTALSKCDFPFQCAHGRPSVMPLLDLNTLKTKKKRLNLKALSEIQNTV
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggcgcgtccacagcgtcaaacttacatcaccatcctgccacagtacaatcgcag
ctaaggagcggagtagccataacttcggtttcacaatgcgtggaggaattgattgccaac
agtatcgatgccaatgcaaaaactatcggcattttcgttgacctgaaaaagtactatgtt
caagtgaccgacaatggctgtggctttagcaaatataatctgttcaaatcagctcgtagg
tacgcaaccagcaaatgcccggacagtgaaaatttcaaatttaatctggctcattacggc
taccgtggcgaggcgttagcgagcatggcggagctctcctcgaacgtcagcattatcact
tgcatgaaaggagacggttcaccttattcgaaaactatatcttcgtttggtacgaagcat
agtgatattcaaacccacgttgccactaagcagcaacaaggatcaactgtgacagtaagc
ggtcttttctccaacatgcctgtcagacgcaaatacatggacgatgatattgaagctgaa
caaattcgcaaaactgtctgcaatttagctctttcaaatctggaggttacattcacgtta
aatgtgttagaatcggcgcatactttgagacttagccgaaccactgatccgcttatcagg
tcttcattgaaatgtttgtgtaacggacgcaatcatcttgctaacaacgtttcgtttagg
ttgaacactattcatgattcagttgcaagtcaaaactttcaaaccatttcaactactaat
gggaaactgcatattgatgcttacttaagtgagactggtcatcgcaacaaatccatacaa
tacgtttatgttaacaggcggttagtgctaaagaccaaaattcacaaactattgtccgaa
ttgacaaaccagagccaacgtgacgattctgatgtcaaaggaattatctcatcacctgcc
tacgtcatttacctgaaatgcccctataaatggtatgacatttcacttgcacctggcaaa
accatggttgagttccgaaactggaattttattttgtcagcggttcgaaaacttttttgt
aaagcgaaaaacattccttggatcagcgttgaaactcccgctaactttaaaagcgaatca
atggatataaacacagctacagatctcgtgtgtgtgatgggtcgtgccgtcggtacaaca
cgaccatgtgacttcacgaatgcaaaatcaacgtcgccaaatggaaatacgactcaaaat
tgtccatttaccgagcaagatcaaaataaacacaccgaattgccgaaagactgggttacc
atgttcagtcaaaaccttggacgtacggtatttttcaacactaaaactgggtgctcatca
ctaactaagccaaccttagctcggtcgacagaaatcaacttaaacaaacgtggtattggc
ctgaacaaagtactggttcccatttcaaaaacgcctcggttatcagcaaacttgttgcaa
tctacacaaaaaacagttaaaaagccgatgccaagtgttcgagtcgataacgttaccgta
tttcgaccacagcaacagaacacaacagcgcacccaacattttttcaaggtatttacaca
gaagtaaagttgacaaaagaggtcttaacgaaattgaaggtaattggtcaatttgggaac
aagtttattgcatgttctgttggctgcaccactgattcacgtggtatgctactactggtt
gatcaacacgctgcccatgaaagagttcgtttggaatcttttatctccgatgcctatgaa
tcaagcaagcgaataaatctgaagacatctaaacttgaaagcaaagttgagattaatctg
accaaaacgcaaacagcagctgtacgtaaccacccagaagtcttctacacgtgcggactg
cgatttgactccgatttgaatacagaagatgatctagtaacggttaacagcattccttct
ctgcttaccacttctggcactttaaaagagacgattgagaatttgattgaagagagaaca
caagcattgtatgtaaaccgtggggttagcgacagcatgtcccctgtattatttcaacta
ttgtgttccaaggcatgtcatggcgcaatacgattcggtgacccactcgcactggaacag
tgtactgagctgcttacggcgctgtccaaatgcgattttccctttcagtgtgcgcatggt
agaccttctgttatgccgctgttggatttgaatacacttaagactaaaaagaaaagatta
aacttgaaagcacttagtgaaatacaaaatacagtttaa
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