Ciona intestinalis (yellow sea squirt): 100175982
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Entry
100175982 CDS
T01056
Name
(RefSeq) m7GpppX diphosphatase
KO
K12584
m7GpppX diphosphatase [EC:
3.6.1.59
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100175982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100175982
Enzymes [BR:
cin01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.59 5'-(N7-methyl 5'-triphosphoguanosine)-[mRNA] diphosphatase
100175982
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
100175982
3'-5' decay
Other 3'-5' decay factors
100175982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
DcpS
Motif
Other DBs
NCBI-GeneID:
100175982
NCBI-ProteinID:
XP_002127473
Ensembl:
ENSCING00000004583
LinkDB
All DBs
Position
1:complement(6712716..6714051)
Genome browser
AA seq
333 aa
AA seq
DB search
MNASSTDGSSSTSTKRLKLSESSNGDATASRKSLSGVELVSVLNDKTSQKAIFVHGRIAS
AKSEQTADDAVILLEKKPFNQSQLQEILSSQTKLTVDLENDIYSTYTAYPPPLVSDIKAT
IICPAAEKHIRKYMKQKLTVVRETKEDYLNITMPFLEKQIASNVFNLQWVFNILEHKAET
ERVLFEDDNKNTGFMLMPDMKWDRSDVKSLYVMALPHKRGLKSIRDLTAEHIPLLENIQT
KGLEVIEKLFKIPANELRVYFHYQPSYYHLHVHINHIELDLPGTEALRAHLLSDVIENLK
LTGDYYQNKTFTFVLQENNFLFTEFAKANKALN
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaagcagcactgatgggtcgtccagcacatctacaaagcgtttgaaattgtcc
gaaagttccaacggtgacgcaacagcttcccgaaagagcttatcgggcgttgaacttgta
tctgtattgaacgataagacgagtcagaaggccatttttgttcatggcagaattgcttca
gctaaaagtgaacagactgccgatgatgctgttatattattggagaagaagcctttcaac
caaagccaattgcaggaaatactaagtagccaaaccaaattaactgttgacttggaaaac
gatatttattccacttatactgcgtatccaccaccattagtttcggatattaaagcaaca
attatttgtccagccgctgaaaaacacattcgtaaatacatgaaacaaaagttaacagtt
gttcgagaaacaaaagaagattatctcaacattacaatgccttttttagaaaaacagatc
gcatcaaatgtctttaatttacaatgggtgtttaacatacttgaacacaaggcagagaca
gaaagagttttgtttgaagatgataataaaaacacggggtttatgttaatgcctgatatg
aaatgggaccgaagtgacgttaaatctctctatgttatggcattgccacacaaacgtggc
ttaaaatctatcagggacttaacagctgagcatataccactgttggaaaatatacaaacc
aaaggcttagaggtgattgaaaagttgttcaaaattcccgctaatgagctgagagtttat
tttcattaccagccatcttactaccaccttcatgttcatataaatcatattgaattggat
ttaccaggaactgaagctttaagagctcatctactttctgatgtcattgaaaatcttaaa
ctaactggagattattatcaaaacaaaaccttcacgtttgtactgcaagaaaataatttc
ttgttcacagagtttgcgaaagcaaataaggctttaaactaa
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