Ciona intestinalis (yellow sea squirt): 100176007
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Entry
100176007 CDS
T01056
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100176007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100176007
03019 Messenger RNA biogenesis [BR:
cin03019
]
100176007
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100176007
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100176007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
Pcf11_helical
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
100176007
NCBI-ProteinID:
XP_009860855
LinkDB
All DBs
Position
14:complement(3439706..3454315)
Genome browser
AA seq
1752 aa
AA seq
DB search
MDDVIEEYSSSLQDLTFNSKPHINMLTILAEENKAHAESVVKVIEAQLYKASEKLPILYL
LDSIVKNVGENYTPLFAKNIVNTFRQAFMTGNEKQKMSLYKLRTTWDEYFPLKRLHALDV
KIQGIDPNWPVKPLPAHLQDASTNIHVNPKFIKRNDTPVVKPQVTPVVSKPSQSKQVNDV
DKIKEQMIRQQKELLDLQQRKLMLELEQTKQELEAKQKEMQSQSIKSEKVPTSRDPRIKQ
NPAPKIPVGSLRVTVKNKPMQTAPKEHSIAKDQKLKVNGEPHKVPPRPNKASTNLQNKPE
PSKIKAAALSKKRSPKNLNKKSKNMISPTERSGAKPKLHQFNKTGMKGLETKPKMHVKET
KKLGQPSDENPLEKLLPVPNEQKESDRRKKRTYRNKPPRSPSPPPPKVARRSSSPAPIPR
ISPDSNVRRDPRQFGKENRRIRSLKEKQPRESSRSSEGSISPRFSPEPDSEDLHRTPGDW
NRPPKRIRPPNDEPSHPPINRRKSADPNIQIPQELTLSHQNEILRQADRQLQNGELTHEQ
HQELLKQLHQLFELQRIRKMEIEEEEDHRRKMNSGNRRGFPPAHMRGGRMNRPPGMMEED
PRFRDHHEPPVHNNRRMAPRGFSRGRGFRGRGRPFQSRPRSPPSPRKIGGPIHDPRLRDE
HEKFSPNPGIPNDFHPDQGPHLSPPHHLEEERLKHRSLSPLHSRRDTPPRKGPPKLERKS
DDRLKNLRKYAHDEQNIQREINDQQIPISARFPTMQNDRNGEESVHMEKERNLEEPEDYI
IANLPKNEPKQQNFEEPEDYIIANLKEEEQTPCEEPEDYIIANIPASAGSYQEDVDQQRR
NSDSEQAYMEHRKKLKQSMHGKDIDKEEEEKMEESGSIEKTTSGTDTDADLSSERKKSEE
LIRSPSLPLKKRRYVSSESPEKKTDDQKDEEATVEKIEAPEAIKDHADSKQEKDKAKDVE
QDIVEVKKEDLFERKIEEDEKMKGPEKDAPGHDEKNSSVFVRDDDDDIAPERGHPRFRGP
RHPPRGRIPHPRDRLQEKEEARMQRIYEEEKEKLEWEHELHHQLQMERWEEERSLKSDDF
NRREAGPPFRRGRGRGFPRLPPRDRRDGWESPPMDEEDLDIARGSIRRGGPPHRPPVVRG
RRFPTHQRDRRRPPLPHDARPPPGYHRGRSPPDRRLPPHPRHPGEPRPPPEWERGHRLPP
NEAHFPPDRPFHPEERRLSPPPINERRKLPIEPARDLPPVNQPPPINQINVDRLLSNLLA
KGILKKTEPERSSPTPPTVSTPPLVKTEPVTAPSVVATKPVEEPRTISPFDEELMTMDPD
ANIPIITLNSDLKIRHDEIIKRLFTGIQCSACGLRFTTRQTDLYAEHLDWHYRVNRKDKE
GFVQSHRSLYPAAGEWICFEEVVDPEEKAKNPFNEDPVKGEFPGANEENDLTVPLTGRPG
EDICKVCKEAFETFYNENDDEWQFANCVKVDDDNFHPSCYEDNYNSSSLITPIKAPLYNP
LDSVKEEIPGLDNSPQIKEEPQSEDEKMEESEVPEKSEVFIKTEVQTDFPNDILEDLVNK
ENEMILNENTEQSQDTEKRQEPVAQDTNSNSMQDNCDVTNTVDDVTTTGDDIGAAIKDAL
LSDGTSPRQNTTDDVIAPDDVTTDDITASDDVTTDDITAPNDVTTDDITAPNDVTTDDIT
ASNDVTTDDITDAPQTENVKPKDGVINDVPNGDNSHSDVTEKDVKAHDDVTDMDTTSAVV
LDNILSENSDNL
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgttattgaagaatattcgtcgtcattgcaagatttaaccttcaattccaag
ccacatatcaacatgctaaccatcctggccgaagaaaacaaagcccatgctgagagtgtc
gtcaaagttatagaggcccagttgtataaggcatcggagaaactaccaattctctatcta
cttgattccattgtaaagaatgtgggagagaactacactccgctctttgcgaagaacatt
gtcaataccttccgtcaagcattcatgactggaaacgagaagcaaaaaatgagtctttat
aagttgcgaacaacatgggacgaatactttcctctcaagagattacatgcccttgatgta
aagatacagggtattgatccaaactggccagtgaagcctttacctgcccaccttcaagat
gcatctaccaacatacatgttaacccaaagtttataaaacgaaatgatacaccagttgtt
aaaccacaagtcacaccagttgtttcaaaaccatctcaatcaaagcaggtaaatgatgtt
gataagatcaaggagcaaatgatccgacagcagaaggaacttcttgacctccagcagcga
aaactgatgcttgaattggaacaaaccaaacaagaacttgaagcaaagcaaaaagagatg
caaagccaatcaataaaaagtgaaaaagttccaacatcaagagacccaagaattaaacaa
aatccagctcctaaaattcctgttggttccttgcgtgtcactgtgaagaataaaccaatg
caaacagcaccaaaggaacattctatagccaaggaccagaagttaaaagttaatggggaa
cctcataaagttccaccaaggccaaataaagcttctacaaaccttcaaaataaaccagaa
ccttcaaaaattaaggctgctgctctatctaaaaaacgctcgccgaaaaatttaaataaa
aagtcaaaaaatatgatatcaccgactgagcggtctggcgctaaacctaaattgcaccag
ttcaataaaactggcatgaaagggctggaaactaaaccaaagatgcatgtgaaagaaaca
aagaaattgggccaaccaagtgatgagaatcctcttgagaaacttcttcccgttcccaac
gaacaaaaggaatcagatcgtcgcaaaaaacgaacatacaggaacaaaccacctcgctca
ccctcccctccacccccaaaagttgcacgaagaagttcttctcctgcaccaataccccgt
atttcacctgacagtaatgtacgtcgggatccacgtcaatttgggaaggaaaatcgtaga
attagatctttaaaagagaaacaaccaagggagtcttccagatctagtgaaggttcaata
tcgcctcgattttccccggaacccgattcagaagacttacacaggacacctggtgactgg
aaccgacctccaaaaagaattcgacctccaaatgatgaaccctctcacccaccaataaac
agacgcaaaagtgccgacccaaatattcaaattccacaagaactaactttaagtcatcaa
aatgagatcctgagacaggctgatcggcaactgcagaatggtgagctaacacatgagcaa
catcaggagttattgaagcaattacatcagctctttgaacttcagaggattaggaagatg
gaaatagaagaggaagaagatcatagaagaaaaatgaactctgggaatagaagaggattt
cctccagctcatatgagaggtggaagaatgaatcgacctccagggatgatggaagaagat
cctcgtttccgggatcatcatgaacctccagtgcacaacaaccgaaggatggctcctaga
ggatttagtagaggaagaggttttcggggaagaggaagaccatttcaatcaagacctaga
tccccaccaagtcctaggaaaattggaggacctattcatgatcctcgtcttcgagatgaa
catgaaaagttctccccaaatcctgggatcccaaatgactttcatcccgatcagggtcct
catctctccccacctcatcacttggaagaagagagacttaaacatcgatccctgtctccc
ttgcattcaagaagagacactcctccccgcaaaggtcctccaaaattggagcgaaaatca
gatgacagacttaaaaatcttcgaaaatatgctcatgatgagcaaaacattcaaagagaa
ataaatgatcaacaaattcctatctctgctagatttccaacaatgcaaaatgatagaaat
ggtgaagaaagtgttcatatggagaaggagagaaatctagaggaaccagaagattacatc
attgctaatttgccgaagaatgaaccaaagcaacagaactttgaagaaccagaagattat
attatcgcaaacttaaaggaagaggagcagactccttgtgaggagccagaggactacatc
atcgcgaacatacccgcatctgctgggagttatcaagaggatgtagatcagcagaggagg
aattccgattctgagcaggcatatatggagcataggaagaagttgaagcaatctatgcat
ggtaaagatatagataaggaagaagaggaaaagatggaagagagtggatcaattgaaaaa
acaacttctggaacagatacggatgctgatttatcttctgagaggaaaaagtccgaagag
ttgattagatccccatcccttccacttaagaaacgacgctacgtcagttctgagtctcca
gagaaaaaaacggatgatcagaaagatgaggaggcaacggttgagaagattgaagctcca
gaggcaataaaagatcatgctgactctaagcaggagaaagataaggcaaaggatgttgag
caggatattgtggaggttaaaaaggaagatctttttgagcgtaaaattgaagaagatgag
aaaatgaaaggcccagaaaaagatgctcctggtcatgatgagaaaaattcctctgttttt
gtccgggatgatgatgatgatattgctcctgaaagaggtcatccaaggttcagaggacct
agacatcctccaagaggaagaatcccacatcccagagatcgcctgcaagagaaagaggaa
gctcgcatgcagaggatttatgaggaagagaaggagaaacttgaatgggagcatgaactt
catcatcagctgcaaatggaaagatgggaggaagaaagaagcctgaaaagtgatgatttc
aacagaagagaagctggtcctccgttccgcagaggaagaggtcgtggattccctcgttta
cctccaagagatcgtcgagatggatgggagtctcctccaatggatgaagaggaccttgac
atcgcacgcgggagcatccggcgtggtgggcctccacatcgacctccagtggtgagagga
cgaaggtttccgactcaccagcgagaccgacgcaggcccccattgccccatgatgcccgc
ccaccacctggttatcaccgtggtcgttcaccccctgatcgccgactaccccctcatccc
agacaccctggagaacccagacccccacccgagtgggagagggggcacagactcccaccc
aatgaagcacatttcccaccagatcgaccctttcaccccgaagagcgtcgattatcacca
ccacctatcaatgagcgtcgaaaactgccaattgaacctgctcgtgaccttccacctgtc
aatcaacctccacccatcaatcaaatcaatgttgacaggctgctgtcaaacttgctagcc
aaagggatactaaagaaaactgaacctgagcgttcaagtcccaccccacccactgtatct
acaccaccgcttgtaaaaactgaacctgtaactgcaccatctgtagttgccactaaacca
gttgaggaaccgcgaactatttccccatttgatgaagaattaatgacgatggatccagat
gctaacattcctattataactcttaattcagatctaaaaatacgccatgatgagatcata
aagcggctctttaccggcatccagtgttcagcatgtggtttacgttttacaacgaggcaa
acagacctctatgctgaacatcttgattggcattaccgagtcaaccggaaagataaggaa
ggtttcgtccaatcacatcgttcgctatatcctgctgcaggggaatggatttgctttgaa
gaagttgttgaccccgaagaaaaagcgaaaaatccatttaatgaggacccagtaaaaggg
gaattccctggggcaaatgaggaaaatgacttgacagttccgttaacagggcgccctgga
gaggatatttgcaaagtatgtaaagaagcatttgaaacattctacaatgaaaatgatgat
gaatggcagtttgctaactgtgttaaagtcgatgatgacaacttccatccaagctgttat
gaagataattataattcaagctcacttattacccctatcaaggctcctttatacaaccca
cttgattctgtgaaagaggaaatcccaggcttggataattctcctcagataaaggaggaa
cctcagtctgaagatgaaaagatggaagaatcagaagttccggaaaaatctgaagttttc
atcaaaactgaagtgcaaactgattttcctaatgatatattggaagatttggtgaataaa
gaaaatgaaatgattctgaatgaaaacactgaacagtctcaagatactgaaaaaaggcag
gaacctgttgcacaagataccaactccaattctatgcaagataactgtgatgtcacaaac
acagttgatgatgtcacaactactggtgatgacataggtgcagcgattaaagatgctttg
ttatctgatgggacttcacctcgtcaaaataccactgatgatgtcatagctcctgatgat
gtcactactgatgatatcacagcctctgatgatgtcactactgatgacatcacagctccc
aatgatgtcactactgatgacatcacagctcccaatgatgtcactacggatgacatcaca
gcttccaatgatgtcactacggatgacatcacagatgctccacaaaccgaaaatgtcaaa
cctaaggatggcgtcattaatgacgttccgaacggtgataattcacattctgatgtcaca
gagaaagacgtcaaagcgcatgatgacgtcacagatatggacaccactagtgcagttgtt
ttagataatattctcagcgaaaattccgataatttatga
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integrated database retrieval system
