Ciona intestinalis (yellow sea squirt): 100176261
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Entry
100176261 CDS
T01056
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100176261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
100176261
Enzymes [BR:
cin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
100176261
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
HECT type E3
100176261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
PEPcase
WWE_5
Motif
Other DBs
NCBI-GeneID:
100176261
NCBI-ProteinID:
XP_026689713
LinkDB
All DBs
Position
1:6262187..6286788
Genome browser
AA seq
2311 aa
AA seq
DB search
MLSRCDSAAGGQGLRKTKTASQETNNNHIPLSLNTEEDKDQQEVSSSGYTVRLRPRPTRQ
TEHYRSPTSKRKIPFKELGVSVKRTVSEPVTRTSVAVRPTRTSILREQKLKTGDIQNKKS
ELHKAQALDSGIPTKRLRSEQPDLPVKTSKSLEQVQTKKTTKKSGKSVKQKSKEVASKLW
YPFIPPAASSDSEEDISFQEELGSSSSTTSLPPTKLASRQTKSASNKTKDKSSADPTTSC
EGKSQEGKGGARPKVTSSKPGGRFTLGRFSKSDSAVSSDKTALKVNKETKASRSNQEPTE
SGVRTRSTLTKIPKATKTSKGKATNKRDEEGKAKNRKRYQSPPNHPLYARKTATNNGKTG
SCASTSRRGRGKTSSVTSREQEDTPPPPVMSQEADQSPEEAQPGSGAVGSSASDNQGASG
GAESAAAGAGGALNTDGDFDEPDMSRLQALLEARGLPSHFFGTLGPRVQQILHRSVNNGT
NSKAQQLLQGMQANGDESRQLQSAIEMCQLLVMGNEDTLSGFPIKMVVPALITLLRMEHN
FDMMNHACRALTYMMEALPRSSAVVVDAVPVFLEKLQSIQCMDVAEQSLTALEMLSRQHG
SSILRANGLSACLLYLDFFSLPAQRNALTVAANCCFVSSSDQRADFSKYYGTSIPLLVQK
LTHHDKKCVESVCLCFARLVDNYHNEPSILKVVAENGLLQNFQNILVVTPPLIGSNTFVM
VIRTMCLLCSSCPNLAAQLVRNNIAETLRYLLCGTASDSDEIELVPRSPQELYEITSLIG
ELMPRLPRDDPMFSVDRLLKQSGRGSGGETTATWQWRTDEGVWKSYSRHDNRMIEDSHRN
GDPEANLLVQGRVYVLDFNVMQQVNEDTGHARAIRRQPEKKDNNKLLVKTESDSSLTDAR
VSLVKEDSVVISQFVRSLFTLLYEVYGTSAGSPAVRHKCLRAVQRMVYYAEPELLRDVLR
NLSVSSHIASMLSSNDLKVVVGALQMAMILMNKLPDVFEVYFTRQGVTHQVEQLLNPAHK
VVGTNQPSPPEAPGTTSSNTSTPVFEGGPSSTDPSPSDPLPGRLSDMLRRKYPPRRSAGK
RMSASSLASTPEDSGGAHRTRGRSSASSPTTDRVISPPLTKAKAFAAAMSTYDGTTDTPT
GPKSKSSGASGRSSATSFFYNLNPTRWGRSSTSSSVAQPSVLGSPHSIGSVTSHSSTGSG
RMSREGLALPILKKMTSVKDTSREKVKVWVREQAKLFLEQYFSVGMTTDSPNDDKSSSVD
QRSLLHHLTSIAQALSTCVEMSVACRNLKALCDITSTSDVSSFELQHSGIVTSVLQFLTK
ESKLNNNDEEELCEMIRNSSKRRSLCIPTPPMTTRRRSKTESSATTQSLNFEETSIHFEG
DRPKSAPSEEMKLGQTEKKIRDDAFEADIPSKSDDNPADASQPLFLTSLDRDDRLRNFLN
VFTGLPTTDFCEEAISLSEFNNVEPLRNFVQKLTLCVSQMEQFQVKSHDLPSAPGRGSQA
LSFFARHQLKCQLQRHPDCSMSKQWHGGPVRVDPLALVQAIERYLIARGYGVASSSDAAW
EQAARQDVLMLMGDDESEDEIEVDNDEDDDDDDEEDDQPTLSTASATKTESTSNAKKHRL
ELYVGNYKLPYNMTVYQAVKQFNEEHCRSTSQMMSSDERDTDDEHITIASTGIWKTTHVI
RYKLVPDNEVSLSTYQWEEIITQNLPHTFEEKRSTLASTDGNIPVTKRPLNHYLKNKLPD
SFMTNDPSKEVLCLTRVIFGLTRYWHTLYTPSILSTDRPLLPISDFVNTKLSAKCSRQLQ
DPLMIMTGELPSWLSEIAHACPFVLPFDIRQLLFRVVSFDRDRAMQHLLDSGLLSDVNTA
SSSAGTGSLSQDSNNRFMPKIEKKKCSVKRENLLQQAEKLMADHGHTRSLLEVQYEGEVG
TGLGPTLEFYTLVSHELQRSNLSLWRSDDNSNSVDQSHNIEQTSAKKMLKKLSEIVEEEQ
FNSPVAMETSFVHSPVGLYPLPIGRTSKLGPIAKACSKFRFLGRFFAKAVMDGRLVDVPL
SMICYKWFLSQEHTITWLDLEQVDPGMSLTFNKLKRLLHQRLTIEQQQSDEMEEKINAVT
MDGCRLEDLGLDFLLPGFPNIELMKSGAKTSLSINNLDKYLNLIAYWTLSEGVRQQLDAM
RDGFQSVFPLQAIDYFFPEELDQLFCGARYQPWSERELADSCRTDHGYNHDSETVKTLFR
VLSQYDAAEQRAFLQFVTGSPHLPVGGLRSLHPPLTIVRKTCEENMTSDSYLPSVMTCVN
YLKLPEYSNESVMRERLQKAAQEGQKSFLLS
NT seq
6936 nt
NT seq
+upstream
nt +downstream
nt
atgttaagtcgttgtgactctgctgctggggggcagggacttcgtaaaaccaaaactgca
agccaagaaaccaacaacaaccatattccactttctctcaacaccgaagaagacaaagat
caacaggaagtttcaagttcaggatacactgtacggcttcggccaagaccaaccaggcaa
actgaacattacaggtctcccacttcaaagaggaaaatcccctttaaggaacttggggtg
tctgtcaaacgcaccgtgtctgagccagtcacacgtacatctgttgctgtacgaccgact
cggacaagtattttacgagaacaaaaactgaaaaccggagatattcaaaacaaaaaatct
gaattgcacaaagcacaagcattggattcaggcattcctacgaaaaggcttcgttcagaa
caacctgacctcccagtaaagacaagtaaaagtttagaacaagtacaaacaaagaagact
acaaagaaaagtggaaagtctgtaaagcaaaaatcaaaagaagttgcaagcaagttgtgg
tacccgttcataccaccagctgcttcctcagattcggaggaggatatttcatttcaagag
gagcttggtagtagttcatctactacttcccttcccccaacgaagctggcttccagacag
acgaagtcagcttcaaataaaacgaaggataaatcttctgctgatcccaccacatcctgt
gagggaaaatcccaagaaggaaaaggtggtgcgagacctaaagtaacaagctctaaaccg
ggcggtcggttcacccttggtagattcagcaagtctgactctgcagtgtcaagtgacaaa
actgcattaaaagtaaacaaagaaaccaaagcatctcgtagtaatcaggaacctactgaa
agtggagtaagaaccagatctactttgactaaaataccaaaggctacaaaaacctctaaa
ggtaaagcaacaaacaaacgagacgaagagggcaaagcaaagaataggaaacgttaccag
tccccaccaaatcatccactctacgcaagaaaaactgcaacaaacaacggcaaaacgggg
tcttgtgcgagcacaagccgcaggggtcggggtaagacgtcaagtgtgacatcacgagag
caggaggacactcctccccctcctgtcatgtcacaggaggcggatcaatctccagaagaa
gcacaacccggatcaggtgctgtgggtagcagcgcatctgataaccaaggagcatcaggt
ggggctgaatctgcagctgcaggagcaggtggtgcgttaaatactgatggagattttgat
gaaccagacatgtccagactacaagctttactggaagcaagggggcttccttctcacttt
tttggcacactaggacccagggtgcaacaaatattgcatagatctgttaacaatggcaca
aactccaaagcacagcagttgcttcaaggaatgcaagcaaatggtgatgagtcgcgtcaa
ttacaatccgccattgaaatgtgccaactccttgtcatgggaaatgaagatactttatca
ggatttccaatcaagatggtggtacctgctctcattactttactacggatggaacacaac
tttgacatgatgaaccacgcgtgtcgtgcgttgacttatatgatggaagctttaccccga
tcctcagccgttgtggtcgatgctgttcccgtgtttcttgaaaagttacaaagcattcag
tgcatggatgtagctgagcaatctctcacagcacttgaaatgctttcacgtcagcacggt
tcctccattcttcgagccaacggtctctcagcgtgtttgctctaccttgattttttttca
cttcccgctcaacgtaatgcactcactgttgctgctaactgctgctttgtatcctcaagt
gatcaacgtgctgacttcagcaaatattacggaacctctatcccgttgcttgttcaaaag
ttgacccatcatgacaaaaaatgtgttgagagtgtatgtctatgctttgcgcgtctcgta
gacaattatcataacgaaccatccattctaaaagttgtggcagaaaatggacttctgcaa
aattttcaaaacatccttgtagttacaccgccattgattggcagtaacaccttcgtcatg
gtgattcgtaccatgtgccttctgtgctcctcgtgccccaatctcgccgcgcagctcgtg
cgaaacaatattgctgaaacattgcgataccttctgtgtggaacagcatcagactcggat
gagatcgaacttgttcctagaagtccgcaagaactttatgaaattacttctttgattggg
gaactaatgccacggttacctcgtgacgacccgatgttcagtgtggatcgattacttaaa
caaagtggacggggttctgggggtgaaaccacagctacctggcagtggagaactgatgaa
ggggtgtggaaatcttactccaggcatgacaacagaatgattgaggattctcatcgcaac
ggtgatccagaggccaacctccttgtacaaggtcgtgtctatgttctcgacttcaacgtg
atgcagcaagttaacgaggatactggtcacgcgagggcgataaggagacagccagaaaag
aaagacaacaataaattgctggtgaagactgagtctgatagcagtctaacagatgctcga
gtgtctcttgttaaggaagatagcgtggtgatctcgcagttcgtacgatcgttgttcact
ctgctgtatgaggtgtatggtacttctgcgggttcacctgctgtgcgccataaatgttta
cgagctgttcagcgtatggtgtattatgcagaacctgagcttctgcgagatgttctcaga
aatctctcagtttcgagccatattgcctccatgctatcaagcaatgatctcaaggttgta
gttggagcattacagatggccatgatacttatgaacaaacttcctgatgtgtttgaagtt
tattttacaaggcaaggcgtaacacaccaggttgaacagttattaaacccagcacacaaa
gttgttggaaccaaccaaccgtcaccccctgaagcccccggcaccaccagctcaaacacg
tccacccctgtattcgaaggtggccccagcagtactgacccatctccctcagacccgttg
cctggacgtttatctgacatgctgcgtcgaaaatatcctccacgtcgcagtgcaggaaag
aggatgtccgcatcttcactcgcatccactcctgaggactccggtggagcacacaggaca
cgtggtagatcaagtgcatcatcacctacaacagatcgtgtgatatctccaccacttacc
aaagctaaggcatttgcggctgccatgtcaacatatgatggtaccacggatacaccaact
ggcccaaaatcaaagtcaagtggcgcaagcggtcggtcatctgcgacctcgttcttctac
aatttaaaccccactcgatggggccgttcatccacctcgtcaagtgtggctcaaccctcc
gtacttggatccccccattcaattggttcggttacatctcactcatctactggaagtggt
cgtatgtcgcgggaaggcttagcacttcctatacttaagaagatgaccagtgtcaaggat
acaagcagagagaaagtgaaggtgtgggttcgtgaacaggcaaagttattcttggagcaa
tatttctccgttggcatgacaactgattcaccaaacgatgataaatcttcttcagtggat
caacgctcgttgcttcaccatctaaccagtattgcacaagctttatctacatgtgtggaa
atgagtgtggcgtgcagaaacctcaaagctctatgtgacataacaagcacatctgacgtg
tcatcatttgagttgcaacacagtggaatcgtgacctcggttctacaatttttaaccaag
gaatccaagttaaacaacaacgatgaggaagaactttgcgagatgatccgtaactcttcc
aaacgtcgatccctctgcatcccaactcctccgatgacaacaagaagacgaagcaaaaca
gaatcgagcgcgaccacccagtcactcaacttcgaagaaacctccatccactttgaaggc
gatcgaccaaaatctgctcctagtgaagaaatgaaactcggacaaactgagaagaaaatt
cgcgatgatgcgtttgaagccgacatcccgtcgaagtcagatgacaatccggctgatgcc
tcacaacctctatttttaacgtcgctcgacagggatgacagactccgcaattttctaaat
gtgttcacaggcctcccaaccacagatttctgtgaagaagcaatatcactgtcagaattt
aacaatgtggaacctcttcgtaactttgtgcagaagttgactctctgtgtcagccagatg
gaacaatttcaagttaaatcacatgacctacccagtgcaccaggacggggatctcaagct
cttagtttctttgcaagacatcagttgaaatgtcaattgcagcgtcatccagattgtagc
atgtctaagcaatggcatggtggcccagtgcgggttgatcctcttgctttggtgcaagca
atagagagatacctgatcgctcgtggatacggagtggcatcctcgtctgatgctgcatgg
gagcaagctgcaagacaggatgtcctgatgttgatgggagatgatgaatctgaggatgag
attgaggttgataatgatgaggatgacgatgatgatgacgaggaagatgatcagccaacg
ttatcaacagcttcagccacaaaaacagaatccacttctaacgctaagaaacatcgcctt
gaactttatgttggcaattataaactgccctacaacatgactgtataccaggcagtgaag
cagtttaatgaggaacattgtagatcaacctcccagatgatgtcttcggatgagagggac
acagatgatgaacatattactattgcaagcactggtatatggaagacaacacatgtgatt
agatataagttggttcctgacaatgaagtaagtctatcaacctaccagtgggaagagatc
atcacacaaaatctcccccatactttcgaagaaaaacgatccactctggcttccacagat
ggaaacatcccagtaactaaacgaccattgaaccattatcttaagaacaaattgcccgat
tctttcatgacaaatgatccaagcaaagaggtcttatgcttgacacgtgtgatattcggc
ttgacacgatattggcacacactctacacacccagtattctatcaaccgatcgaccgttg
ctcccaatatcggacttcgtcaacacaaaactatcagctaaatgtagccgtcaattgcaa
gatcctctgatgatcatgacgggtgaacttccctcctggttgagtgagattgctcacgcc
tgtcccttcgtcctcccgtttgacatccggcaacttctcttccgggtcgtctcttttgat
cgggatcgagcaatgcaacatcttcttgactccggactcttatcggatgtaaacacagct
tcttcctctgcaggaacaggatcacttagtcaggattcaaacaaccgttttatgccaaag
attgagaagaaaaagtgttcagtcaagcgcgaaaacctactccagcaagcggagaaatta
atggcagaccacggtcacactcgttcattacttgaagtacaatatgagggtgaggtgggt
acagggttgggtcccaccctcgagttctacacccttgtcagccatgaacttcaacgcagc
aacctcagtttgtggaggtctgacgataacagcaactctgttgatcaaagtcacaacatt
gaacaaacctcagcaaagaaaatgctcaaaaaactttccgagatcgtggaggaggagcag
ttcaactctcctgttgctatggagacgagttttgttcactctcctgttggattgtaccct
cttccaatcggccggacatcaaaacttggtccgatcgcaaaagcttgttccaagttcaga
ttcctcggaagatttttcgccaaagctgtgatggatgggagactagttgatgttcccctc
agcatgatatgttacaaatggttcctgagtcaagaacacacaataacctggttagacctt
gagcaagtcgaccctggaatgtctcttacattcaacaaactaaaacgtctactacaccaa
cgactgaccattgaacaacagcaatcggatgaaatggaagaaaaaataaacgctgtgaca
atggatggatgtagactggaggacctcggacttgacttcctcctcccaggtttccccaac
attgagctgatgaagtccggagcaaaaacctctctctcaatcaataatcttgataaatat
ctcaacttgatcgcatactggacactgagtgaaggggttcgtcagcaacttgatgcaatg
agagatggattccaatctgtgtttccacttcaagcaattgactatttctttccagaggag
ttggaccagttgttctgtggtgcaagataccagccttggagtgaaagggagctcgccgac
tcgtgtcgcaccgaccatggttataaccacgacagcgaaactgtgaaaaccttgtttcgt
gtgttgtcacaatacgacgcagctgaacaacgagcctttttacagtttgtaaccggaagt
ccacacttgcctgtggggggtttacgttctctgcaccctcctctcaccatcgtgcgcaaa
acctgcgaggagaacatgacgtcggacagctatcttccgtcggtgatgacgtgtgtgaac
tacctaaagctgcctgaatattcgaacgagtctgtgatgcgagagcgcttacaaaaggcg
gcgcaagaaggccagaaatccttcttgctttcataa
DBGET
integrated database retrieval system
