Ciona intestinalis (yellow sea squirt): 100176504
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Entry
100176504 CDS
T01056
Name
(RefSeq) putative elongator complex protein 1
KO
K11373
elongator complex protein 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cin03016
]
100176504
Transfer RNA biogenesis [BR:
cin03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
100176504
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_ELP1_1st
A-sol_ELP1
Beta-prop_ELP1_2nd
HB_ELP1
TPR_ELP1
Beta-prop_WDR35_TULP_N
TPR_GEMI5
TPR_IFT80_172
Motif
Other DBs
NCBI-GeneID:
100176504
NCBI-ProteinID:
XP_009859423
LinkDB
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Position
8:complement(619488..623882)
Genome browser
AA seq
1334 aa
AA seq
DB search
MKNLKLLYCDHLNIIPGASFLTVDSETNKLYLATTDTVYGYDLNTFNKVFEVDLRKENLT
PDGNLEIVGLQFMSGEEKLCVSLKHGDIILLSTFDCEVECVGTLDCELDSMFWSPDQEVV
LFTTNVGTAVAMTHDFDPITEIEVGMDRFGEGEFVNVGWGKKETQFQGKAGKFVPGKEKK
VEAGLVVDDGKMKVVWRADGQYFAISTIENGCRKIRVWNRDCVLQYTSENLNGLENSLAW
KPSGSLIASTQMKAHRHDVVFFELNGLQHGEFTLNFERNSVNILKLEWNSDSSVLMVLAE
SRQGLDEESAVTYLQLWSSTNYHWTLKQSICFHEKVALACWDSENLFDLHVLMQNGSYHL
YKWNWVIDCSSSDGGGGYNSSSSELVASNGSHVAVVDGSKVKLTPFKHMNVPPPMCAYQY
KFNTNVKHLAFCESNLNSDSFITLTEDGSLFCFMKEGSYKDNNVDLKLVAAGGNGFKTTI
DILSLSAKFSISQSLEHKVELSNLRHLLWVGEQTMVAASYSYTLKSDAICLFTLDFGNFT
CMCKVIKAVSSNVVSMCSFKSGDTCVYVIAQMQDGKVFKYELSSLNCEALLDTQGSPVVL
TTLCPYMSVCSFQHTQAADTTYALISRSAQKQLFLNNTVISRECTSYSIHDEYILYTTSS
HKIICISRNSDISHYNKPTENPLPQQISCDISRSVERGSTIVTVTPNDTKVVLQMPRGNL
ELIHPRPLVISVVKRAINKFQYRDAFILMRKHRINMNLLYDHNPQQFNNKVEHFIEQLDS
VDYLNLFLSELKDENFTETMYSQYYPNSSKMGNVLISNSFTPSKVNSVCDKVLSVLNAAQ
NGKHFLSILTAHVRKIEPEIKQALSKVRDQKKSLNSALVAEGLHHLHVMVEGRVLYRESL
ATYDLELALMVAQVSNDDPKEYMPFLNKLKQMDPDYRNYEIDMFLKNYSRALVNIAKCPD
HFNECIALVKSHSLHREALKQFGKYTPQYKEISNLYAEFLVGKSRYEEAGIILARCDSHK
RAIKCFTTACSWQHALNSATYLKYSKEDQTELAQNLSRALADKNRFLEAAHLLEHEASDV
PSAIKALLKGRHWENALNVIRTHKQVDLIDTQVLPAIQDAMKENETSIKTYSEQFERYFN
RLMVVREIKKQKQLQAMLYGGGEGDLESDIASDFGSTVTGSSHSSASSRASGRTAKSRRK
QERKRFSLREGSRYEEEGLLQALREVVTNLSVLSTSIHSLLLHAALFYMDAEAESLQSLY
DKTRSIVSKNITNIWVLPDSSEFNGTGPQSTVNSILSNRANVNNSEPGSFADLETFLPPK
VDLNVKFGMHIYGK
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatctaaaattgctgtactgtgaccacttgaacatcatacctggtgcaagcttc
ttaacagtagattcggaaaccaataagttgtacttggctaccacagatacagtgtatggc
tatgacttaaacacttttaataaagtatttgaggtggatttaagaaaggaaaatttgact
cccgatggaaatttggaaattgttggcctgcagttcatgtctggagaggaaaaactgtgt
gttagtttgaaacatggagacattatcctgcttagtacttttgattgtgaggtagaatgt
gtggggacattggactgtgaacttgattctatgttttggagtcctgatcaagaagtagtt
ctcttcaccactaatgttggtaccgctgttgccatgacccatgattttgatccaattact
gaaattgaagttggaatggacaggtttggtgagggggagtttgttaacgttgggtggggg
aagaaggagactcagtttcaagggaaggcaggaaagttcgtgccagggaaagagaaaaag
gtggaagctggtctggttgttgatgatggaaagatgaaagttgtgtggagagcagacggt
caatacttcgctataagtaccattgagaatggatgcagaaaaatccgtgtttggaataga
gactgcgtgttgcagtataccagtgagaatttaaacggtttggaaaattctcttgcttgg
aaaccctcaggttcactgatagcttcaacgcaaatgaaagctcacagacatgatgtcgtc
ttttttgaattaaatggattacaacatggagagttcactttaaactttgaacgaaattct
gtgaatattttaaagctggagtggaattctgattcaagtgttctgatggtgctggctgaa
agtaggcaaggattggatgaagaatctgcagtaacctatttacaactgtggtcttctact
aactaccattggactttaaaacaaagcatttgctttcatgaaaaagttgcactggcatgt
tgggattcagaaaacctgtttgatctgcatgtcttaatgcaaaatggatcttaccacctg
tacaagtggaattgggtgatagactgtagtagtagtgatggtggtggtggttacaattca
agtagctctgaattagttgccagcaatggctcacatgtagccgtggtagatggatcaaaa
gtaaagcttacaccatttaaacacatgaacgttccaccaccaatgtgcgcataccagtac
aaattcaacaccaatgtcaagcatttggccttttgtgagtcaaatctaaattctgacagt
tttataacactgacagaagatggcagtttgttttgttttatgaaagagggaagttataaa
gataataatgttgaccttaaacttgtagctgctggtggaaatggtttcaaaacaaccatt
gatattttatcattatctgccaaattttccatttcccaatcattggaacataaagtagag
ctaagtaatctgagacatttactctgggtgggtgagcaaacaatggtagctgcttcatat
tcatatactttgaaatctgatgcaatttgcttatttacgttggattttgggaacttcact
tgcatgtgtaaagtgataaaggcagtatccagtaatgttgttagtatgtgctcatttaaa
tcaggggatacttgtgtttatgttattgctcaaatgcaagatggtaaagtgttcaaatat
gagctatcgtctttgaattgtgaagctttgctggatacccaaggctcaccagttgttctt
accacactatgcccatacatgagtgtttgttcatttcagcacacacaagcagctgataca
acatatgcactcatatcaaggtccgcacaaaagcagttatttcttaacaacacagtaata
agtagggagtgtacctcatactcaattcatgacgaatacatactatacactacgtcttca
cataaaatcatctgtatttcaagaaactctgacatcagtcattacaacaaaccaacagag
aacccacttcctcaacaaatatcttgtgatatttcccgttctgtagaacgtggctctacc
attgttactgtcacccctaatgatactaaagttgttctgcaaatgcctagaggtaacttg
gaacttatccatccacgtccgcttgtaatttcagtcgtaaaacgtgcaatcaacaagttc
caatatcgcgatgcttttatactaatgagaaagcacagaattaacatgaatttgctatac
gatcacaatccacagcagtttaataataaagttgaacattttatcgagcaactagattca
gttgattatctaaacttgttcttaagtgaattgaaagatgaaaattttacagagaccatg
tattcccaatattacccaaactcaagcaaaatgggcaatgttctcatatctaattctttt
acaccaagtaaggtgaactctgtttgtgacaaagtgttatctgtgttaaacgcagctcaa
aatgggaaacattttctctctattcttacagctcatgtgcgaaaaattgaaccagaaatc
aaacaagcactaagcaaagtacgagaccaaaagaagagcttaaactctgctcttgtcgct
gaaggattgcatcacctgcatgttatggttgagggacgtgttttgtacagagaatcatta
gctacatatgatttagagctcgcactaatggtcgcacaagtctcaaatgatgatcctaaa
gaatatatgccatttttaaacaagctcaaacaaatggatcccgattaccgtaactatgag
attgatatgtttttgaaaaactacagccgtgcattagtaaacatagcaaagtgtcctgat
catttcaatgagtgtattgcacttgttaagtcccatagcttgcacagagaagctctaaag
caatttgggaagtacactccacaatataaagagataagcaacctctatgctgagtttctg
gtcggtaaaagtcgatatgaagaagccggaattattcttgctcgatgtgacagtcacaag
agggcaataaagtgtttcacaacagcatgcagttggcaacatgcgttaaacagcgctact
tatttgaaatactcgaaggaagaccaaactgaacttgctcaaaacctttctcgtgccctt
gccgataagaatcgctttttggaagctgcacatttattagaacatgaagcaagtgatgtt
ccatctgccataaaagctttgttaaaggggaggcactgggaaaatgcacttaatgtgatt
cgaactcacaaacaagttgatctcattgacacccaagtgctgcctgcaatccaggatgcg
atgaaagagaatgaaacttcaataaaaacttactctgaacaatttgaaagatatttcaac
agattgatggtggttcgagaaattaaaaagcaaaaacaattacaagcaatgttgtatggt
ggtggagagggcgatcttgagtctgacattgcttcagattttggtagcactgtcactgga
tccagccacagtagtgcaagtagccgagcatctggtagaactgcaaaaagtcgcagaaaa
caagagagaaaacgtttctctttaagagaaggatcaaggtatgaagaagaaggacttctt
caagctttaagggaagttgtgaccaatctctctgtattaagtacctccattcactcccta
cttctgcatgctgcattgttttacatggacgcagaagctgagtcattacaatctctttat
gacaaaacacgatctattgtatcaaagaatattaccaatatttgggttttgccggacagt
tcagaatttaatggcactggtccacaatctacagtcaacagtattttatctaacagggca
aatgttaataactctgagcctggaagtttcgctgatctagagacattccttccacctaaa
gtagatttaaatgttaagtttggaatgcatatttatggtaaataa
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