Ciona intestinalis (yellow sea squirt): 100176594
Help
Entry
100176594 CDS
T01056
Name
(RefSeq) dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like
KO
K12667
dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit 2 (ribophorin II)
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin00510
N-Glycan biosynthesis
cin00513
Various types of N-glycan biosynthesis
cin01100
Metabolic pathways
cin04141
Protein processing in endoplasmic reticulum
Module
cin_M00072
N-glycosylation by oligosaccharyltransferase
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00510 N-Glycan biosynthesis
100176594
00513 Various types of N-glycan biosynthesis
100176594
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100176594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribophorin_II
Ribophorin_II_3rd
Ribophorin_II_C
Ribophorin_II_2nd
Motif
Other DBs
NCBI-GeneID:
100176594
NCBI-ProteinID:
XP_002121868
Ensembl:
ENSCING00000009122
LinkDB
All DBs
Position
2:5895678..5902618
Genome browser
AA seq
626 aa
AA seq
DB search
MNFKCISTLLALVGIANAVQLDSVLTTENSKQLISKFKAPYKTLEDAHYSIVGLKSYQQG
GAVASAEKEAACKLVKTVDTKSLTSIFYAATTQAEIPACKHEFNSETLEFVKGKISETSD
VKTIYEAVSILKSLGKAVDSDEVISVLLAAVKADNSVLASSLALLTASQLSKPNLSSLLK
SVDVEDMAAQADELSERYLHFDNDLAVTATFLSAAISLPAKSLPISNDQVILFSNFVLRH
KNSVSSIKEASLLVSALAKVASASQIAVGKAQLISGTSLSEANPSIKVSILNVFGQPIPN
LSVKAESIIRASDNEVLLSNAAFKVDENMNYQLLFWKNKPKSGFYDVTLAASSPKATLVG
VSEVEFRVKITTKMALTNLEIGTAEKDQVTPTLNSLKYGGKTESMSADTQQRIIMKFQVQ
DTTDKSLITPHQAFVRFVSSTGQEIIFVAEHDKTLTYKFEIDLATAGREQFNSASGKYSM
HLIVGDATISNPVFWKFGDINLKLGEAKKSKSSFESHYSAKPEIQHTFRLPEERPPVFVS
QAFTVACLLPIVLLFIFWAKVGANLGKLKLAPKNIIFHAGLIGIFVLYYFCWKSLDMFTT
VQYLFGVGAVTFVFGNSVLSDIANNR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaagtgcatttctacattgcttgcactggttggtattgccaacgctgtgcaa
ctggactcagttttaacgactgaaaacagcaaacaactaatttccaagtttaaggcacca
tacaagacattggaagatgcacattactcaattgttggcctgaagagttatcagcaagga
ggtgcagttgcttctgcagaaaaagaggctgcttgcaaacttgtgaaaactgtagacacc
aaatctttgacatcaatcttctatgctgccactactcaagcagagatcccagcttgcaaa
cacgagttcaacagcgagaccctagagtttgtgaaaggaaaaatttctgagacttcagat
gttaaaactatttacgaagctgtttctatcttgaagagtttgggaaaagcagttgacagc
gatgaagtgatctcagtccttctagctgcagtaaaagccgacaacagtgtcttggcttca
tcccttgcactactcactgcgtctcagctctccaaaccaaacttatcatccctgcttaaa
tctgtggatgttgaggatatggcagcacaagctgatgaactgagtgaaagatatcttcac
tttgacaacgatctcgctgtaactgccaccttcctctctgctgccattagtctcccagct
aaaagccttccaatcagtaatgaccaagttattctgttttccaactttgtacttcgccac
aagaactctgtatctagcatcaaagaagcgtccttgcttgtatctgctcttgcaaaagtg
gcttctgcatcacagattgctgttgggaaagcccaacttatatctggaacctctctttca
gaagctaacccatctattaaggtttctatcttgaatgtatttgggcaaccaatacccaac
ctttcagtgaaagccgaatccatcatccgtgcttctgataacgaagttttgttgtctaat
gctgcgtttaaagttgatgagaatatgaattaccaacttctattctggaaaaacaaacca
aagagtggcttttatgatgtcacacttgctgcttcctcaccaaaagctaccttggtcggc
gtctctgaggttgaatttcgggtgaaaatcacgaccaaaatggctctcaccaacctagag
attgggacagctgagaaagatcaagtcactccaactttgaacagccttaaatacggtggt
aaaaccgagtcgatgtcagctgacactcaacaaagaattatcatgaagtttcaagtccaa
gacactacagacaaatctcttatcactccacaccaggcattcgtccgttttgtcagctca
accggccaagaaattatatttgttgccgaacacgacaaaactttaacatacaagtttgag
attgaccttgccactgctggtcgcgaacaatttaactcggcgtcgggaaaatactcgatg
catctgattgttggtgacgcaaccatctccaaccctgtgttctggaaattcggtgacatt
aacctgaaacttggtgaagcaaagaaatcgaaatcttcattcgagagtcattattcagcg
aaacccgaaatccaacacacattccgactgccagaagaaaggccaccagtgtttgtgtct
caagctttcacagttgcttgccttcttcctattgtgttgctgttcatcttctgggctaag
gttggtgcaaatcttggaaagttgaaacttgctccaaagaacatcatctttcatgctgga
cttatcggaatctttgttctttattatttctgctggaagagccttgatatgttcacaacg
gttcagtatctatttggcgtgggagctgttacgtttgtatttggcaactccgtcttgtca
gatatagctaacaaccgctga
DBGET
integrated database retrieval system
