Ciona intestinalis (yellow sea squirt): 100176629
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Entry
100176629 CDS
T01056
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03022
Basal transcription factors
cin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100176629
09124 Replication and repair
03420 Nucleotide excision repair
100176629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100176629
03400 DNA repair and recombination proteins [BR:
cin03400
]
100176629
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100176629
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100176629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
BRICHOS
SH2_1
ATP-sulfurylase
Motif
Other DBs
NCBI-GeneID:
100176629
NCBI-ProteinID:
XP_009858636
Ensembl:
ENSCING00000004652
LinkDB
All DBs
Position
5:2386234..2392073
Genome browser
AA seq
538 aa
AA seq
DB search
MSAEQIQLLISQVRHKKRDGSLYLMSERLAWCPEGRDHFDVSHLYSDIKCQKVSPEGKAK
IQLQIILLNESSFVFHFSNTNTAEGKSDREKVKTLLAQMLPKFRRTIDKELEEKNKLLQQ
DSELFQTYKDLVVSGVISPEEFWNSHSSKLSSSKQNLIAQKVGVSAGFLAEVRPQSDGCN
GLRYNLTSDTIHSIFSTYPAVKRKYLENVPDKLTEKDFWTMFFQSHYFHRDRTAQSSSKD
LFADCVKKDEQDILSLLSLGVKDKFNDLTYLEDGDSAQDEGYGNTLNEPLPGTAKPSASQ
IAHKNIIKRFNHQNAMILSTSLRQEKDGNGVTETDGEVVIKKARLKDATTYSDLESPHSS
NEAMLNIQKNERYKHGPTLVCQAHQELNNDNVREGMRIISSQCENYKPRLSQVLKPSNAA
NALKELSSGMSSSSQTSENAIQHILSQTQQDELKQLYASLSELLRHFWTCFPANTTFLQE
KVNRMCHSIETFQQTRLRVFQDQLRRSMVHANVTEHLDDMISAAFAKFNSWQSKKTRR
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgaacaaattcagcttctgataagccaggtccgccacaaaaagagggatggt
tcattatatttgatgagtgaacgactggcttggtgtccagagggcagagatcactttgat
gtcagccacttgtattctgatattaaatgtcaaaaagtgagccctgaaggaaaagcaaag
atccagttacagattattcttctgaatgaatcttcatttgtgtttcatttttccaacact
aacacagcagaaggtaaaagtgacagagagaaagtgaaaacattacttgctcaaatgcta
cctaagtttcgtcgtacaatagacaaggagttggaagaaaaaaacaagttgctgcaacaa
gacagcgagctgtttcaaacttataaagatcttgtagtgagtggagttatttcacctgag
gaattctggaattctcattcatctaaactgtcatcatcgaaacaaaatctgatcgcacaa
aaagttggcgtgtctgcaggattcctcgcagaagtccgtccacaatcagatggttgtaat
ggtcttcgctataacttgacatctgatacaatacattctatattttccacttaccctgcg
gtaaaacgaaaatatctggaaaacgtgccggacaaactaacagagaaggatttctggaca
atgtttttccaatcccattattttcaccgagatcgaactgcgcaaagctcaagcaaggat
ctatttgctgattgtgtcaaaaaagatgaacaagatattctgtctttgttgagcttgggt
gttaaagacaagttcaatgacctcacgtacttggaagatggggacagtgcacaggatgag
ggttatggaaacacgttaaatgaaccactacccggtactgccaagccgtcagcatcgcag
atcgctcataaaaatattataaaacgcttcaatcatcaaaatgcaatgattctctcaaca
agtctaagacaagaaaaagatggaaatggtgtcacagaaacagatggtgaagtcgtcatc
aaaaaggcgcgcttaaaagatgcaaccacatattctgatcttgaatctcctcacagcagt
aatgaagcaatgttaaatatacagaagaatgaaaggtacaagcatggcccaactcttgtc
tgccaagcacatcaagagttaaacaatgacaatgttcgggaaggcatgagaattatttca
tcgcaatgtgaaaactacaagccacgtctttcacaggtacttaagccatcaaatgctgct
aacgccctgaaagaactttcctctggaatgtcttcctcctcccagacctccgagaacgca
atccaacacatcctctcacaaacacaacaggatgaactgaaacagctatatgcttcgtta
tctgaactcttgcgtcacttttggacgtgcttcccagctaacacaacatttttacaggaa
aaagtaaaccgaatgtgccacagtattgagacttttcaacaaaccaggcttcgagttttt
caagaccagttacgtagaagcatggtacatgctaacgtcaccgagcacctggatgacatg
atcagtgcagcttttgcaaagtttaattcatggcaatctaagaagacacgcagatag
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