Ciona intestinalis (yellow sea squirt): 100176650
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Entry
100176650 CDS
T01056
Name
(RefSeq) transcription factor RFX4-like isoform X1
KO
K09174
regulatory factor X 4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
100176650
Transcription factors [BR:
cin03000
]
Eukaryotic type
Other basic domains
RF-X
100176650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFX_DNA_binding
Pox_D5
Motif
Other DBs
NCBI-GeneID:
100176650
NCBI-ProteinID:
XP_026690015
Ensembl:
ENSCING00000010119
LinkDB
All DBs
Position
4:complement(1787009..1792240)
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AA seq
717 aa
AA seq
DB search
MQQQTVGLVAVSMSPSKTKRLAVNRTNEITVVDEHGNTVGKYQPNLTASSELKPFFFLNV
IGMLVSEPATTYMSSSSREMPIHMRYPVPCSNEATITTEWLTKNFEENSLTSVPRSIMFD
EYQKFCRDSNTKPFNQAVFGKIVRACFPNLTTRRLGVRGQSRYHYAGLSVKLLSRYARKF
HAFGEGLNLLRNNSSYQRRNEITSGGTTQTPEYNYVASHETVPYQTADVMANIKAKRNVN
PFSLVLPPYPTEDDVEIKDGWTKPTLAAFLDFYRCYNRRLLGYIISLDFEKTTSHLSNFG
ASIPNQCKSMLKTTDICGIIALCDDIMFQEATTALLPDCLATLTTEFNVTIRKFAKTLPS
WVGAKRCYDSTTNANVISTRIEAAKVWGEYVRRVTTLCHVAKEARKTLVDPLVLTQLLDD
LCNLGVSDIVAQSTFAGGDDVYTTGDQSAPCNEKEEAMSYISNFCQLLQCHASVEMYVCL
LLEIIDRHAGLIPESKLESKGYEVITDRTRQFVMKWAMYASKMLTEITLKSSESVGTFHL
VMLLFGDYINHVICFRGERAKGMKRLRSVIKKGSFYFTRLKNSGSRSTTNNVGESSISNH
SRQPFPLNNNKYTQRSGDNSAYLREVSNSVPAYRRNREVNERKEPKIEPKQIHCINPSYF
PETNMVQDTRLDRMMIQNDPRPAVVVEPAFQPENERASFYLLPGNNNAPGGAMLLRK
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcaaaccgtaggccttgtagcagtttccatgtcacccagcaaaacaaagcga
cttgctgttaatagaacaaatgaaattactgttgtagacgaacatggtaacactgtaggt
aagtatcaacctaatcttactgcttccagtgaattaaaaccttttttttttctaaatgtt
ataggaatgctggtatccgaaccagcaacaacgtacatgtcttcgtcgtcccgggaaatg
cccatacacatgagatatcctgtaccatgcagcaatgaggcaacgataaccactgagtgg
cttactaagaatttcgaagaaaattctctcacaagtgtaccaaggagcattatgtttgat
gagtaccagaaattttgccgggacagcaacactaagccgtttaatcaagcggttttcggg
aagattgttcgagcttgctttccaaatttaacaactcgtagacttggtgtacgtggtcaa
tctcgctatcattacgcaggtctgagcgtcaaactcttatctcgttatgcccgaaaattc
cacgcatttggagaaggacttaacttacttagaaacaacagttcttatcaacggcgaaac
gagatcacgagtggaggtacaacacagactcctgagtacaactatgtagcatcgcatgaa
acggtgccatatcaaactgctgatgtaatggcaaatataaaagccaaaagaaatgtgaac
ccgttttcgttggtgttgcccccatatccaactgaagacgacgtagaaataaaagatggt
tggacgaaaccaacgttggctgcctttctcgacttttaccgttgctacaaccgccgcttg
cttgggtacattatcagtcttgatttcgagaaaacaacgagtcatttgtccaattttgga
gccagtatcccaaaccagtgcaagagcatgttgaaaacaaccgatatatgtgggataatt
gctctgtgtgatgacataatgtttcaagaagctacgacggctttgctgccagattgcctg
gcgacacttacaacagaatttaacgtcaccattcggaaatttgcaaaaactttaccgtct
tgggtcggcgcaaagaggtgttatgactctaccaccaatgctaacgttatcagtacaagg
atcgaagcggcgaaagtgtggggcgagtatgtcaggagagtgacaacgctctgtcacgta
gcgaaagaagcgagaaaaacgctggtcgacccgttagttctaacacagcttttagatgat
ctatgtaatcttggtgtttctgatattgttgcccaaagtacgttcgctggtggtgatgac
gtgtacacgacaggcgaccaatcagcgccatgcaacgagaaggaagaggcgatgagttat
atttcaaacttctgtcagcttttgcagtgtcacgcgagtgtggaaatgtacgtttgcctc
ttgcttgaaataatagatcgacatgctggtctcataccagaaagtaagcttgaaagcaag
gggtacgaagttataactgaccgaacgaggcaattcgttatgaagtgggcaatgtacgca
agcaaaatgctgacagagataactttaaagtcgagcgaatcagtcggaacatttcatctt
gtgatgctgctgtttggagactatattaaccacgtaatctgcttccgtggagaaagagca
aaggggatgaaacgacttcgatccgtgattaaaaagggttctttctattttacacgactc
aaaaattcaggaagtcgttctactactaataatgttggcgaatccagtatatcgaaccac
agtcggcaaccgtttccattaaataataataaatatacccaacggagtggcgacaatagc
gcttacctacgggaggtctccaattctgtaccagcttacaggcgaaacagggaagtaaac
gagcggaaagagcccaaaatcgaacctaagcaaattcattgtatcaacccttcctatttt
cccgagacaaatatggtacaggatactcgccttgacagaatgatgattcaaaacgaccct
agaccggcagtggtggtagaacctgcgtttcagcccgaaaacgaaagagcttcgttttac
ttactaccaggcaataataacgcgcctggcggtgctatgcttttaagaaagtga
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