Ciona intestinalis (yellow sea squirt): 100176840
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Entry
100176840 CDS
T01056
Name
(RefSeq) splicing factor, arginine/serine-rich 15
KO
K13191
RNA-binding protein 16
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100176840
03041 Spliceosome [BR:
cin03041
]
100176840
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100176840
Spliceosome [BR:
cin03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
100176840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
100176840
NCBI-ProteinID:
XP_002127718
LinkDB
All DBs
Position
12:complement(4146625..4156573)
Genome browser
AA seq
1224 aa
AA seq
DB search
MEAVKSFNDELSGIYETKPPISRAKMALLTKKAIKGIKFYKHIVQSVEKFVQKCRPEYKV
PGLYVIDSVVRQSRHQFGAEKDVFMPRLCKNIITTFQHIYKCPSEDKPRILRVLNLWQKN
SVFPQEIVQQLMVMGGAPSPPSNSTQSESNSAAKPAAPDAANLTNILTHLLSNPDTSQIQ
NLAGLLSRSQQSQLDDLLHQIKAPEPPGKDEIKEEVEVIEETVFQQPPLNNQPPFLHQPP
FLHTEQDNKPPAFNRDVLDFDYSDDEKTPPMPPGNQPRREPAALNHNQRNQFDPTTIPNL
PTPNQLQQLTANGGLHHPPQRPPIHPPPQLQQPPFQPNHQPPDMDRMRRLEAEQENFNHQ
LEQMSSERGNRDPFRGPDAKRRRSRSRDRQRDRPRSRHSRERSHRSRRSRSRSRDRSRRS
RRSKSLERKEKKGMVPQKEGSISVLTTTLWIGNISSKVLQHELKALVGEYGEVESVNMIP
PRGCAYICMKQRADASRAIGKIRHQRLAGKSLKCDWAPSKEMPEEHKSTWVKEHGVNYIP
ISDQPGQMKELLTWGFIDPESLSEEKKAELVAAQNPETEEEEMIETPQMGQQVLPGFNPT
FVSAPGMVPMGQPMMVRPGFPVNPFQVPHQLGFHQQQPPQIRPEHSQMEVKPPEKEGAMT
PTRDEQGEALQQQQAMPQFQAPFGGVPMAQRFQRPMHLPQLQIRMMPGMGQQLMQPRMGV
MPIRMGFPMQLRPGFHPNMGARMPMQGGTPQMMQNPMQQQMAAHVRPMGGFPGQIPMLRP
TVTEPHVPTTSGINPMFEGIRQGEPPTSGISKPAETDLNPNPTTPTATIAPAREMGLPPS
REDEEARNPERGPSRGGMDRGPPRDFDRGSSRGMRRSPPRDMDRRSRDMDRDRRSRDSRR
SPPREYDRSRDRYRDRRDFDRRDMDRGSRGRDRRDDRDWGPPRGGFRGRGGFGGDRGRRG
FDRGFSRGGRGRGGWGRPDSRRSPEIDPEEEEYQRQRREKLKKRHEEEDEYVTEKIDFSS
FGLPSGFGGALEDGQGPPESNEDDKDKPESNSDGKDEACDDGNRPPNPSNTDNIKEEVPA
ATLHDENISNSNEYESTNTEENNPNKGSVKQEYVTPSQSIDNFKTANQTAVKTEYTNQEP
ENQTEFSNEIVPKFESIQPEQINEPEPTTETPYKDEIEAPQPGVPLSPKQEPNVRNCSPG
TPTNDECISESKDNIQDGLNSDEM
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgttaagtcgtttaacgatgagttgtccggcatatatgaaacaaaacctccc
atttcgagagcgaaaatggcgctgcttacaaagaaagcaattaaaggcatcaagttttat
aaacacattgtacaaagtgtagaaaagtttgtgcaaaagtgtcggccagagtacaaagta
ccaggattatatgtaattgattcggtcgtgcgccaatctcggcatcaatttggtgctgaa
aaagatgtcttcatgccaagactatgcaagaatattatcactacatttcagcatatttat
aaatgtccatcagaagacaagccacgaattctacgagtgctgaacctgtggcaaaagaat
tctgtttttcctcaagaaatcgtgcaacagttaatggtaatgggaggtgctccatctcca
ccatctaactcaacacagtcagagtcaaactctgcagcgaaacctgcagcaccagatgca
gcgaacctcacgaacatccttactcatcttttatcaaatcctgacacaagccaaatacaa
aacctcgctggtttgttgtcaagatcacaacaaagccaacttgatgatctgcttcaccaa
ataaaagcaccagaaccaccaggtaaagatgaaatcaaagaagaagttgaagtaatagaa
gaaacagtgttccagcaacctcctctaaacaaccaacccccctttctacaccaacccccc
ttcttacacactgaacaagacaataaaccgcctgcatttaaccgcgatgtgttagatttc
gattacagcgatgatgagaagacgccacccatgccccctggcaatcaaccacgtcgagaa
cccgcagctctcaatcataatcagcgtaatcaatttgacccaaccaccatacccaaccta
ccaacccccaaccagttgcagcaattaacagcaaatggggggttacatcacccaccccaa
agacccccaattcacccacccccccaactccaacaacccccattccaacccaaccaccaa
cctccggacatggatcgcatgagaaggttagaagccgaacaagaaaacttcaaccatcag
cttgaacaaatgtcctctgagagaggaaaccgagatccttttcgtggtccggatgcaaaa
agacgaagatcaagatcccgtgatcgtcagcgagaccgccctcgatctcgacattcccgt
gaaagatctcacagatcacgaagatctcgttcacgctcacgtgatagaagtcggcgctca
cgaaggtcaaagtctttagagcgtaaagaaaagaaaggaatggtcccacagaaagaggga
tcaataagtgtattgacaaccactttgtggattgggaacatttcatccaaggttttacaa
cacgagttaaaggctttggttggtgaatatggtgaagtggaaagcgtgaatatgatacca
ccgcgtggttgtgcttatatttgtatgaaacaacgtgctgatgcgagtcgtgctatcggg
aaaatacggcatcaacgtctcgctggcaagtcgcttaagtgtgattgggctccaagtaaa
gagatgccggaagaacacaagtcaacctgggtgaaagaacatggggttaactacataccc
atctccgatcaaccagggcagatgaaagagttgttgacatggggatttattgacccagag
tcgttatctgaagagaaaaaagccgaacttgtggctgctcaaaaccctgaaactgaagag
gaagaaatgattgaaactccgcagatgggtcaacaagtgttaccagggtttaaccccacc
tttgtatccgcccctggtatggtacccatggggcaacccatgatggtgagaccaggattc
cctgttaacccgttccaagttccccaccaacttggttttcaccaacaacaacctcctcaa
atacgtcccgagcactcgcaaatggaggtgaaacccccggaaaaagagggagctatgacc
ccaacaagggacgagcagggtgaagccctacaacaacaacaagcaatgccgcaattccaa
gccccatttggtggggttcccatggctcaacgattccaacgtccaatgcatcttccacag
ctacagataagaatgatgccaggaatggggcaacaactgatgcaaccccgaatgggggtc
atgccaatcaggatgggtttcccgatgcaacttcgccccgggtttcaccccaacatgggt
gcgaggatgcctatgcaagggggtacccctcaaatgatgcaaaaccccatgcagcagcaa
atggcagcgcatgttcgaccaatggggggattccctggtcagataccgatgttacgaccc
acagtgactgaacctcacgttccaacgacgagtggaatcaacccaatgtttgaaggtatc
agacaaggggaaccacccacatctggaataagcaagccggctgaaacggatttaaacccg
aaccccacaaccccaactgccactattgcccctgctcgagaaatgggacttcccccgtcc
agagaagatgaggaggcaagaaatcctgagcgaggaccaagcaggggtggcatggataga
ggacccccacgcgatttcgatcgtggctcttcaaggggcatgaggaggagcccacctcgt
gatatggatcgaagatcgcgagatatggaccgtgatagaagatcacgtgattcaaggagg
tcaccgcctcgtgaatatgacagatcacgtgacagatatcgtgaccgaagggattttgat
aggagggacatggatagaggatcaagaggtcgagatcgtcgtgatgacagagattggggt
cctccgcgtggaggtttcagaggaagaggaggatttgggggtgatcgaggccgacggggc
tttgatagggggttttcaagaggtggtagaggtcgaggtggctggggtcgtccggactct
cgaagatcaccagagattgatcctgaagaggaagagtaccagagacaaaggagagagaag
ttaaagaagagacatgaggaagaagatgaatatgtcacggagaaaatcgattttagttcg
ttcggtttgcccagtgggtttggtggggcattagaagatggtcaaggcccacctgaatct
aatgaagatgataaagataaaccggaatccaattcagatggcaaagatgaagcatgcgat
gatgggaacagacctccaaatccaagcaatactgataatattaaagaagaagttccagct
gctacattgcacgatgagaatatcagtaactcaaacgaatatgaaagtacgaacacagaa
gaaaataatcccaacaaaggttctgtaaaacaagaatatgttaccccatcacaatcaatt
gacaattttaaaactgccaatcagaccgctgtaaaaacagaatacaccaatcaagaacca
gaaaaccaaactgaattttcaaatgaaattgtgcccaagttcgaaagcattcaaccagaa
caaatcaatgaaccagaaccaacaacagagacaccatataaagatgaaatagaagctccc
cagccaggcgtcccgctgtctccgaagcaggaacctaatgtgagaaactgtagcccaggc
actcctacaaacgatgaatgtatttctgaatctaaagataatattcaggatggacttaat
tctgatgaaatgtga
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integrated database retrieval system
