Ciona intestinalis (yellow sea squirt): 100176856 Help Entry 100176856         CDS       T01056                                  Name (RefSeq) pre-mRNA-processing factor 6   KO K12855   pre-mRNA-processing factor 6 Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin03040   Spliceosome Brite KEGG Orthology (KO) [BR:cin00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     100176856  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:cin03041]     100176856 Spliceosome [BR:cin03041]  Complex B   U4/U6.U5 tri-snRNP components    U5 snRNP specific factors     100176856  Complex C    U5 SnRNP specific factors     100176856 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  PRP1_N TPR_14 TPR_19 HAT_PRP39_N Suf TPR_16 HAT_PRP39_C HAT_Syf1_CNRKL1_N HAT_Syf1_CNRKL1_C TPR_2 TPR_8 TPR_9 TPR_21 CAF1A_acidic NatA_aux_su Motif Other DBs NCBI-GeneID:  100176856 NCBI-ProteinID:  XP_002128772 Ensembl:  ENSCING00000008817 LinkDB All DBs Position 7:4762970..4775888 Genome browser AA seq 949 aa AA seqDB search MSDITGVIQQQKKKKPWLGQAAPPGYVPGLGRGATGFTTRSDIGPARDVSDPTDDRHAPP GLRTVGDQLKASRKTEDEEEDLNDANYDEFTGYAGNLFSSGPYEKDDEEADAVYESVDRK MDERRKQYRERREREELERFREERPKIQQMFSDLKRKLSVISEDDWSNIPAVGDARNKRQ RNPQLEKITPVPDSLFTRGLAQSATVNTLDARQQQYGGINTPFPSGLNTPFPGTATPGWS TPAGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLHSMLPQYGGDVADIK KARLLLKSVRETNPKHPPAWIASARLEEVTGKLQVARNIIMKGTEMCPKSEDVWLEAARL QPSDVSKAVCASAIVQLPLSVKIWIRAASLETDDKAKKRVYRKALENVPNSVRLWKVAVE LEDTDDARIMLSRAVECCPHSTELWLALAKLESYQNARKVLNKAREHIPTDRHIWITAAK LEEAHDNHKMVNKIIERSITSLKANMVDINREQWIKDAEDTEKSGSIVTCQSIVRNVIGI GVEEEDRKHTWMNDAESSISHGAYECARAMYAHALNLLPSKKSIWLRAAYLEKNHGTRDS LETLLQKAVAHCPKAEVLWLMGAKSKWMANDISAARSILALAFQANPNSEDIWLAAVKLE SENNEHDRARKLLAKARANACTARVMMKSIKLEWCLNLLDDARSLLDEATNKYPDFAKLW MMKGQIFEQVGEIQSAREAYTAGLGKCPRAIPLWILLSKLEQKKGTLTKARAVLEKARLK NPNCPELWLASIRLEWKSDIKNIASSLMARALQECPSSGLLWSEAIFIEARPQRKTKSVD ALKKCEHDSHVLLAVARLFWSERKLTKAREWFLRTVKIDQDFGDAWAFFYRFELAHGNEE KQNEVLKRCVNAEPRHGQLWQSVSKDIANWKLKTMELLPIVSAKVPVVF NT seq 2850 nt NT seq  +upstreamnt  +downstreamnt atgtctgatattactggagttatccaacaacaaaagaaaaagaaaccttggttgggacaa gcagctccaccaggatatgtgcctgggttagggagaggagctacaggctttactacacga tcagatatcggtcccgctcgtgacgtaagtgatccaacagatgatagacacgctccacct ggattaaggacggttggagatcaacttaaagcttccaggaagacagaagatgaagaagag gacttgaatgatgctaattatgatgagttcacgggttacgctgggaaccttttttcctcc ggaccttacgagaaagatgacgaggaagcggatgctgtttatgagagcgtggatcggaag atggatgaacggaggaagcaatatcgggagaggagggagagggaggagctggagaggttc agggaagagagaccgaagattcaacaaatgttttccgatttaaagaggaagttgagtgtg atatccgaagatgattggtcaaacatacctgcggtcggtgatgcacgaaacaagcgacaa cgtaacccccaactagagaagataacccccgtgcctgattcattgttcactagaggtttg gcacaaagtgctacagtcaatacactggatgcaagacaacagcaatacggtggcatcaac actccatttccatctggcttaaacactcccttccctggcacagctaccccaggttggtca actcctgctggtgaacttgacatgagaaagattggccaagctagaaacacacttatggac atgaggttgagccaggtatctgactcagtaagcggccaaacagtagttgaccccaagggt tacctcacggatcttcactccatgttaccccaatatggtggggatgttgccgatattaag aaggcgaggttattgttgaaatcggttcgtgaaaccaaccctaagcacccccctgcgtgg attgcttcggctagactggaggaagtaacagggaagttacaagttgcgaggaatattatc atgaaagggacggagatgtgtcctaagagtgaagacgtttggttggaagcagcgaggcta caacccagtgatgtttcaaaagctgtgtgtgctagcgccatcgtgcagttgccgttatca gtgaagatatggatacgagctgcatcgctcgaaactgatgataaagctaagaagagagtt tatagaaaagcgcttgaaaatgttccaaactcggttcgtttatggaaagtagccgtggag ttggaagatacagatgacgctcgtataatgttatcgagggcagttgaatgttgtccacat agtactgaattgtggttggctcttgctaagcttgaatcatatcagaatgctagaaaggta ttaaacaaagcacgtgaacacattcccaccgaccgacacatttggataacagcagccaaa ctagaggaggcgcacgacaaccataagatggtgaacaaaattattgaaagatcaataact tcactcaaagctaatatggtggatattaacagagaacagtggataaaagatgcagaagac acagaaaagtcgggaagtatcgtgacttgtcaaagtatagtgaggaatgtaattggtata ggagtggaggaggaagataggaaacatacatggatgaatgatgctgaaagttcaatctca catggtgcatatgagtgtgcgcgtgctatgtatgctcatgctcttaacttacttccaagc aaaaagagcatctggctacgagctgcatacttagagaagaaccacggcactcgtgactcg cttgaaactttgctacagaaagctgtggctcattgtcctaaagctgaagtcctctggttg atgggagccaagtctaaatggatggctaatgatatctcagctgccagatccattcttgcc cttgctttccaagccaacccgaactctgaagacatctggcttgctgctgttaagttggaa tcggagaataatgaacacgatcgagcgaggaaacttcttgcgaaagctcgtgctaatgct tgtactgcacgtgttatgatgaagtcaatcaaacttgaatggtgtttgaacctacttgat gatgcccgatcattacttgatgaagccacgaataaatatcccgactttgctaaactatgg atgatgaaaggtcagattttcgaacaagttggtgaaattcaatcggcgagggaagcttat actgcgggtttgggaaaatgtccacgtgccattccattatggattctattgagcaagctt gaacaaaagaagggaacgttaacaaaggcaagagcagtgcttgagaaagctcgacttaag aacccaaactgcccagaactctggttagcatctataaggttagaatggaagtcggacata aagaacatcgcaagtagtttgatggcacgcgcgttgcaagaatgtccatcgtcgggactt ctatggtccgaagcaatattcattgaggcgcgaccacagcgtaaaacgaagagcgttgat gcgttaaagaaatgcgaacacgactcgcatgttttgctcgctgttgcaagattattctgg agcgagcgcaaactgacaaaagcccgcgaatggtttttaaggacggttaaaattgaccaa gactttggagacgcttgggctttcttctatcggtttgaactcgcacatgggaatgaagaa aaacagaacgaagttttaaagagatgcgtcaacgctgaaccaagacacggacaactctgg caatctgtttctaaagatatcgcaaactggaaacttaaaacaatggaattacttccgatc gtaagcgctaaggtcccggtggttttctga

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