Ciona intestinalis (yellow sea squirt): 100176960
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Entry
100176960 CDS
T01056
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100176960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100176960
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100176960
Spliceosome [BR:
cin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100176960
Complex C
U5 SnRNP specific factors
100176960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
DrmE_N
Motif
Other DBs
NCBI-GeneID:
100176960
NCBI-ProteinID:
XP_009857905
Ensembl:
ENSCING00000005082
LinkDB
All DBs
Position
3:complement(996392..1006740)
Genome browser
AA seq
2143 aa
AA seq
DB search
MADASARSLQYEYKANSNLVLQADRSLIDRRPRDEPTGEVLTLQGKLTEIKMGDRAQRTK
PPQMEERKAKRRKRDEDEKFQANLRGRSLLSDGVDEMVGIVYKPRTKETRETYEILLSFI
QAAIGDQPRDILCGAADEVIAVLKQEKSRDKERRNEIQLLLGQLEDSRYHVLVNLGRKIT
DFGAESDLKATDENIDETYGVNVQFESDDEDGDDNKYGEVREASDVEDEVEEGVEANVDT
VVSANLTNEAGGINVAKNKDLHPRDIDAYWLQRNLSKVYDDAIVSQQKAEEVLEILKTAG
DDLQCENQLVHLLGFNQFNFIKTLRLHRQMILYCTLLASAQSLDAKQEIEKKMESEADLK
MILEQLHDTEKEDIIREEQDRRERLRRSKVDADLKATDAENVKSEDVYQPSQKSIDLEDL
EFNQGSHLMANKKCQLPDGSYRKQRKGYEEVYVPALKPKPFKNKEKLVSIESLPKYAQNA
FEGFKSLNRVQSKLADTALNSDENILLCAPTGAGKTNVALLCMLKEIGKHINVDGSIKLD
NFKVIYIAPMKSLVQEMVGSFGKRLANYGVKVAELTGDHQLCKEEINATQVIICTPEKWD
IITRKGGERTYTQLVRLIIMDEIHMLHDSRGPVLESIVARTIRSIETTQEDVRLVGLSAT
LPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQHYIGITEKKPMKRFQVMNEIVYEKVVD
NAGRNQVLIFVHSRKETGKTARAIRDMCIDNDTLGQFLREGSASTEVLRTEAEQVKNMEL
KDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQVY
NPEKGRWVELGALDVLQMMGRAGRPQYDTKGEGVLITTHNELQYYLSLLNQQLPVESQMI
SCLPDALNAEIVLGNVQNIKDAVNWLGYTYLYIRALRQPSLYGVESPEDDPMLQQRRIDL
AHAAVTMLAKNNLVKYDRKSGQLQVTDLGRIASHYYCTNESMATYNQLLKPTLSEIELFR
VFSLSSEFKYITVREEEKLELNKLLERVPIPIKESIEEASAKVNVLLQAYISQLKLEGFA
LMADMVYVTQSAGRLIRALYEIVLYRGWAQLADKCLSLSKMINRRMWQSMTPLRQFKKVP
DEVVKKIEKKNFPWERFYDLGHNEIGELIRMPKMGKLLHRLIHQFPKMELSVHVQPITRS
TLRVELTITPDFQWDEKIHGNSEGFYIFVEDVDGEVVLHHEFFLLKSKYASDEHVVNFFV
PVFEPLPPQHFIRIISDRWIGSETQLPVSFRHLILPEKYPPPTELLDLQPLPISALRNSE
YEALYENDFPCFNPIQTQVFNAIYNGDENVFVGAPTGSGKTVCAEFALLHALNLDPDSRC
VYVTPVEAVADLIYKDWRKKFEVSLGKRVVLLTGETSTDLRLISRASIIIATSERWDVIS
RRWKQRKNVHTVSLFIVDEIHLIGGESGPELEVVCSRMRYIASQLDKNIRIIALGSSLAN
AKDVAQWLGCTNMHTFNFHPNVRPVPLELHIQGFNISHTQSRLLSMAKPVYNAITKHSPK
QACIIFVPSRKQCKLTAVDILTYTAADASAQRFLHCNESELGAYLEHVKDATLKETLSNG
VAYLHDGSTELERTVVEQLFSSGAVQVLVASRSLCWGLNLAAHLVVIMDTQHYNGKIHAY
VDYPVTDILQMIGRANRPLKDEEGKCVIMCQSSKKDFFKKFVYEPLPVESHLDHCLHDHF
NAEIVTKIIENKQDAVDYLTWTFLYRRMSQNPNYYNLQGVSHRHLSDSLSELVENTLADL
EQSKCISIEDEMDITPLNLAMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYE
SIPIRHHEDSTLKQLLPKVQHKPQNLRFTDPHIKTNLLIQAHLSRLQLPAELQSDTEQIL
GKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSRDSYLKQLPHFSADLIKQCTQ
KEIESVFDILEMEDSDRSQLLKMNESQMADVARFCNRFPNIELNYEVQSEDDLHAGTPVV
INVVLEREDEVAGPVIAPFFPQKREEGWWVVVGDPKTNSLISIKRLTLQQKAKVKLDFIP
PSAGSHSYTLYFMSDAYMGCDQEYKLLLNVRESAGESSASDSD
NT seq
6432 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcctcggcacgatcgttgcaatatgaatacaaagcaaattcgaacttggtg
ttacaagctgatcgatctttgattgatcggcgaccaagagatgaaccaactggagaagtc
cttacactgcagggtaagctgactgaaattaaaatgggagatcgtgctcaaagaacgaaa
cctccacaaatggaagagcgaaaagcaaaacgaagaaagcgtgacgaagatgaaaagttt
caagcaaatcttcgtggtagaagtttgctctcggacggtgtggatgaaatggttgggatt
gtttacaaacctcgtacgaaagaaacccgggaaacctatgagattctactcagtttcata
caagctgcgattggtgatcaacccagagatatcttatgtggtgcggctgatgaggtcatt
gctgtgttgaaacaagaaaagtcaagagacaaggaaagaagaaatgaaattcagcttcta
cttggtcaactagaagactctcgttatcatgtcttggtaaatttaggaagaaaaatcact
gactttggtgctgaaagtgacttaaaagcaacggatgaaaatattgatgaaacgtatgga
gttaatgttcagttcgaatctgatgatgaagatggtgatgataataagtacggggaagtc
cgtgaagcttcggatgttgaagatgaagtggaagaaggagttgaagcaaatgttgatacg
gttgtgtccgctaatcttacaaatgaagctggtggtattaatgtggctaaaaataaagat
cttcatcctagagatatcgatgcttactggctgcaaagaaatttaagtaaggtgtatgat
gatgctattgtttctcagcagaaagcagaagaagtattggaaattcttaagacagctggg
gatgaccttcagtgtgaaaaccagcttgttcatctgcttggatttaatcagtttaacttt
attaagactttacgacttcataggcagatgattttgtattgtaccttgcttgctagtgct
caaagtcttgatgcaaaacaagaaattgagaaaaaaatggaaagtgaagctgacctcaaa
atgatcttggagcaacttcacgacactgaaaaagaagatattatccgtgaagagcaagat
cgaagggaaagactccgacgttcgaaagttgatgcggatttgaaagcaactgatgcagaa
aatgtgaaaagtgaagatgtttatcaaccaagtcagaaatctattgatcttgaagatctt
gagtttaaccaaggttcccatttaatggcgaataagaaatgtcagttgccagatggttcc
tatcgaaagcaaagaaaaggatatgaagaagtatatgtacctgctttaaaaccaaaacca
tttaaaaataaggaaaaacttgttagcattgaaagtttgcctaaatatgctcaaaatgct
tttgaggggttcaaatcactaaacagggtgcaaagcaagcttgcagacacagctttaaac
agtgatgaaaatattttgctttgtgctccaactggtgcaggaaaaaccaacgttgcactt
ctgtgcatgttaaaggagataggaaaacatatcaacgtggatggatcaataaaactggat
aactttaaagtgatttacatcgctccgatgaagtctttggttcaagagatggttggaagc
tttggaaagagacttgccaactacggtgttaaagtcgctgagctcactggtgaccatcag
ttgtgtaaggaagaaataaatgcgactcaggttatcatatgcacccctgagaagtgggac
atcattacacgtaaaggaggtgaaagaacatacactcagttggttcgtttgataatcatg
gatgaaatacatatgctgcatgatagtcgtggccctgttcttgaatcaattgttgcacga
acaatcagatcaattgaaaccacccaggaagatgtgaggttggttggattgtcagctacg
ctaccaaactatgaagatgttgctactttcctccgtgttgatccagcaaaaggtttattt
tactttgacaatagctttcgccccgttcccctcgaacaacattacattggtatcactgaa
aagaaaccaatgaagagattccaagttatgaatgaaattgtttatgagaaagtggttgac
aatgcaggcagaaaccaggttttgatttttgttcattcccgtaaagaaactggtaaaact
gccagagcaatccgggatatgtgtattgataacgacacattggggcagttcttaagagaa
ggttcagcatcaactgaagttttacgtacagaagctgaacaagttaagaatatggaattg
aaagatcttctgccatacgggtttgccattcatcatgctggtatgactcgtgttgacaga
acgcttgttgaagatttgtttgcggatcgacacatacaagttttagtttccacatctacc
ttggcatggggcgtcaacttacctgctcacactgttataataaaaggaacacaagtgtat
aaccctgaaaagggtcgatgggttgaacttggtgcattggatgttttacaaatgatgggt
agggcaggtcgaccacagtatgatactaaaggtgaaggtgtcctgataactacacacaat
gagcttcaatattatttgtctcttttgaatcaacagttacctgttgaaagtcaaatgatc
tcctgtctccccgatgctttgaatgctgagatagtgcttgggaatgtacagaatataaaa
gatgctgttaattggttgggttacacatacctttatattcgtgcactgagacaaccatca
ctgtatggagtggaatcaccagaagacgatccgatgcttcaacaacgaagaattgattta
gctcatgcagctgtcacaatgctggccaagaacaacttagtgaaatatgacagaaaatct
ggtcagctgcaagttactgatcttggacgaattgcaagtcattattactgtacaaatgaa
agtatggccacatacaatcaacttctaaaaccaacattgagcgaaattgagttgttccgc
gtattttctctttcatctgaatttaaatatatcactgtcagggaagaagaaaaattagag
ttgaacaaacttttggaaagagtgccgattcctattaaagaaagcattgaggaagcttca
gccaaagtcaatgtgctactacaagcttacatatcccaacttaaattagaaggatttgct
ttaatggcggatatggtttatgtcacgcaaagtgcaggaagacttatccgtgctttgtat
gaaattgttctttatcgaggttgggctcagcttgcagataaatgcctctcactgagtaag
atgattaaccgaagaatgtggcagtcaatgaccccactgcggcaatttaaaaaagtccca
gatgaagttgtgaagaaaattgaaaagaaaaattttccatgggaacggttttatgatttg
ggtcataatgagattggagagttaattcggatgccaaagatgggaaaacttcttcatagg
ttaattcatcagtttcccaagatggaattatcagtccatgttcaacctatcaccagatca
accttacgagtggaattgacgatcacaccagattttcaatgggatgaaaagattcatggg
aactctgagggattctatatatttgtggaagatgttgatggtgaagtagtcttgcatcat
gagttctttcttttaaaaagcaaatatgcatctgatgagcatgttgtcaacttctttgtt
ccggtgttcgagcctcttcctcctcaacatttcatcaggatcatatcggatcgatggatc
ggatcagaaacccaacttccagtttcattcagacatctcatcttgccagagaagtatccg
ccaccaaccgagcttcttgacttgcaacctcttcctattagtgcactaagaaactcagaa
tacgaagccctatatgagaatgactttccttgttttaacccaattcaaacacaagttttt
aacgcaatctacaatggagatgaaaatgtattcgttggagctcctactggtagcgggaaa
acggtttgtgctgaatttgctttgctgcatgcgttgaatcttgaccctgattcaaggtgc
gtttatgtcacacccgtcgaagctgttgctgatttaatttacaaagactggcgtaaaaag
tttgaagtcagtttggggaaacgagttgtcctgttaacaggagaaacaagcacggatctt
cgtttaatatcaagagcatcaatcatcatcgctacttcagagagatgggatgttatttct
cgacgatggaagcaacggaagaatgttcacactgtatcgctcttcattgttgatgaaatt
catttgattggaggggagagtggacctgaacttgaggttgtttgttctcgaatgcggtac
atcgcatcccagcttgataagaatattcgaatcattgcacttggatcttcgttggcaaat
gctaaagatgtcgctcagtggttaggatgtacaaacatgcatacattcaattttcatcca
aatgtacgaccagtgccgcttgaacttcacattcaagggttcaacatcagccacactcag
tcaagacttctcagcatggcaaaacctgtttacaacgctataacaaagcactcaccaaag
caagcctgcattatatttgtgccttccagaaagcagtgtaagcttactgcagttgatatt
ttaacttatactgcagcagatgcctcggcacagaggtttcttcactgcaatgaatcggag
ttaggtgcttatttggaacatgttaaggatgctacgttgaaagaaacactgagcaatgga
gttgcttatttacacgatggttcaactgagttggaacgtactgttgtggaacaactgttt
tcttcaggtgcagttcaagtgcttgttgcttcccgtagtttgtgctggggattaaatctc
gccgctcatttggttgtgatcatggatacccagcattacaatggcaagattcatgcatat
gttgattaccctgtgacagatatattgcagatgattggccgtgccaatcgaccattaaag
gacgaagagggaaaatgtgtgattatgtgtcaaagctcaaaaaaagactttttcaagaag
tttgtttacgagccactgccagtagaatcccaccttgaccactgcttgcatgatcacttt
aatgcagagattgtcaccaaaattattgaaaacaaacaagatgctgttgattacttgacc
tggactttcctttacagaagaatgagtcaaaatccaaactattacaacttgcagggtgtc
tcgcatcgacatttatctgacagtttatctgaattggtagagaatactttagctgatctt
gagcaatcaaaatgcatttcaattgaagatgaaatggatatcactccgctaaatttggct
atgattgccgcttactattacattaattacaccacaattgagttattcagcatgtctctc
aatgcaaaaacaaagatacgtggtttgattgagatcattagtaacgctgcagaatatgag
agcatccctattcgacaccatgaagacagcacactgaaacaacttttaccaaaagttcag
cacaagccacaaaacctaaggtttactgatccacatattaaaaccaacctcttgatccaa
gctcatctttcaagacttcagttaccagcagaactacaatctgacaccgaacaaatactt
ggaaaagctatccgattaatacaagcctgtgttgatgtattgtcttcaaatggctggctt
tctccagctcttgctgcaatggagcttgcacagatggtaacacaagcaatgtggagtcga
gattcctatttaaaacaactgccacacttcagtgccgacctcattaaacaatgcactcaa
aaggagattgaaagcgtgttcgatattcttgagatggaagattcagatcgaagtcaactc
ctcaagatgaatgagtcgcagatggcagatgttgcgaggttttgcaacaggttcccaaac
attgaactgaattatgaagttcaatctgaagatgatctgcacgctggcacccccgtggtc
attaatgttgtgttagaaagggaagatgaagtagctggtccagtgatcgctccattcttt
ccacagaagcgtgaagaaggttggtgggtggtggtgggtgacccgaagacaaacagcctt
atttcaatcaaacgacttacacttcaacaaaaagcaaaagtgaaattagatttcattcct
ccttctgctggttcacattcctatactttatatttcatgagtgatgcttacatgggatgt
gaccaggagtataaacttctacttaacgtgcgagaatctgctggtgaaagtagtgccagt
gattctgattaa
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integrated database retrieval system
