Ciona intestinalis (yellow sea squirt): 100177013
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Entry
100177013 CDS
T01056
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
100177013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cin03400
]
100177013
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
100177013
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rad4
BHD_1
BHD_3
BHD_2
Motif
Other DBs
NCBI-GeneID:
100177013
NCBI-ProteinID:
XP_026691298
Ensembl:
ENSCING00000013290
LinkDB
All DBs
Position
8:complement(1818189..1826577)
Genome browser
AA seq
1317 aa
AA seq
DB search
MPKSKSTKKRITVKSEKKDVPPSTKKEAASSMSSDEDDWEEVEEDKINQSNIAVKDVEIE
FDLPGVVQKQRKKNSAKDWILAFVKRCMNKNIKDRQISLHKVHLVCLLSVGFQLNEVGSS
EDLQALILSTLPEKFIDPQPKLMTIERLTNLLNWITSKFTKGNNAVTLKNQGMVNIGEKE
KCIEKCIEIESVQQKLDLVLLCLVLFRALGLQVRFVFSVHPISFKPPKYEEVEKNALKLA
NHLEKLKKVTANQCENLEELLCKVRLVNFTPEEIKEESIPQVDGACDDETTQPRRSTRKR
TKVLAEAKTNKNSSSRTKRQKPNEKSSSETEVVSKYEFKDSSLTKEATNTNSNNSKEVSK
HFKSKVGNKSRPQRNISPSKKLSIMVSNDKPAFEDNKPCADQQNHISDDQDAVTRKRKND
EEQEKENKVKRTLRKIAVKIKSCPKDSGHLSEENNDFETTVSKKRKTRSNKTKPKTQKAQ
KQDTVLSDEEDDFLPDQKPDSDDDEDSDFEAVEHKKAKLSTSRPSQLKKPPTKKPVKKAS
GTKSKSNNQNSEKDINEWLEVYIAKVGWVTVDCVSGVINEPDAIESKTTNPIQYVLSFDG
NNSVKDVTSRYASQWLIMTRKLRIGYLEKDWWNNLLACYKTKNKAQDLEENKQLEAKLLS
QPLPTSIAAFKSHPLFALRRHLLKYEAVYPPDVPPLGYVKSEEVLPRSSVHCLHTKEKWL
QSALTVRDGEQPYKMVASYLLNKKLQRNSDTPSLALFGEWDAVTRKRKNDEEQEKENKVK
RTLRKTTVKIKSYPEDSGHLSEENNDFETTVTKKRKTRSNKTKPKTQKVQKQDVVLSDEE
EDFLPDQKPDSDDDEDSDFEAVEHKKAKPSTSRPSQLKKPPTKKPVKKASGTKSKSNNQN
SEKDINEWLEVYIAKVGWVTVDCVSGVINEPDAIESKTTNPIQYVLSFDGNNSVKDVTSR
YASQWLIMTRKLRIGYLEKDWWNNLLACYKTKKQVSYNSVYSYNVQAQDLEENKQLEAKL
LSQPLPTSIAAFKSHPLFALRRHLLKYEAVYPPDVPPLGYVKSEEVLPRSSVHCLHTKEK
WLQSALTVRDGEQPYKMVASYLLNKKLQRDSDTPSLALFGEWQCDPYQPPVAEGGKVPRN
DFGNVDLYQPSMLPIGCVHLRLPNLQVVAKKLNIDIASAVVGFDTHHGFPHPTLDGYVVC
KEFEEVLTDAWEEEETLAAERAFAKREERVLKNWKLLFRGVLTLERLRNKYKDVEPIDST
PNEQQTSADEKTPATTSSAWQTERLQNEKEKQKPKRKTRAAKKKTNKNNFPYEVETI
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaatcaaaatcgaccaaaaagaggatcacagtgaaaagtgagaaaaaagatgtt
cccccatccacaaagaaggaagctgcatcatcaatgagcagtgatgaggatgactgggaa
gaggtggaagaagataaaatcaaccaatccaatatagctgtaaaggatgttgaaattgaa
tttgacttgcctggagtcgttcagaaacaaagaaagaaaaattcagcaaaagattggatt
cttgcatttgtgaagcgatgcatgaataaaaatattaaagatcggcaaatatctttgcat
aaagtacatttggtttgcttgttatctgttggcttccagttaaatgaagtcggttcaagt
gaggatcttcaagcattaattctttcaactctgccagagaagtttatagatccacaacct
aagttaatgactattgaacgtttaaccaacttactgaactggatcacttcaaagttcaca
aaaggcaacaatgctgtaactttaaaaaatcaaggtatggttaatattggtgaaaaagaa
aaatgtattgagaaatgcattgagattgaaagcgtacaacaaaaactggacttagttttg
ttgtgtttggttttatttcgtgccttgggattacaagttcgttttgtgttttctgtccac
cccatttcatttaaaccaccaaaatatgaagaagtggaaaagaatgccctcaaactggca
aatcatttggaaaagttaaaaaaagttacagcaaaccagtgtgagaatttagaagaactt
ctctgcaaagtacgtttggttaactttacacctgaagagataaaggaggaatccatacca
caagtggatggggcttgcgacgatgaaaccactcaaccacgtcggtcaactcgtaaacgg
acaaaagttttggctgaagcaaaaactaacaagaactcaagttctagaacaaaaaggcaa
aaaccaaacgaaaaatcgtcaagtgaaaccgaagttgtgtcaaaatatgaatttaaagac
agctctttgacaaaggaagcgacaaatacgaacagtaataattcaaaggaagtttcaaag
cattttaaatccaaggtgggaaacaaatcaagaccgcaaagaaacatttcaccttctaaa
aagctcagcatcatggttagcaatgataaacctgcgtttgaggataataagccgtgtgcg
gaccagcaaaaccatatatctgatgatcaagatgcagtcacacgaaagcgaaaaaatgat
gaagaacaagagaaagaaaacaaagtaaagcgtactttgagaaagattgccgttaagatt
aaatcttgccctaaggattctggacatttatccgaggagaataatgattttgaaacaact
gtttcaaaaaaacgtaaaacaagaagcaataaaaccaaaccaaagacacagaaagcacag
aaacaagatactgttttatctgatgaggaagatgactttttgccggatcaaaaacctgac
tctgatgatgatgaggacagtgattttgaagctgtggagcataaaaaagcaaaactttca
acatcaagaccctcccagttaaagaaaccaccaacaaaaaaaccagtcaagaaagcatct
ggaaccaaatcaaaatcaaacaatcaaaatagtgaaaaagatatcaatgaatggctagaa
gtttatattgctaaggtcggttgggtgacagtggattgtgtgtctggtgttattaacgaa
ccagatgctattgaatcaaaaactacaaatcctattcaatatgttctttcatttgatggc
aacaatagtgtgaaagatgttacatcaagatacgcttctcagtggctcattatgacaagg
aaactgagaataggttaccttgaaaaagattggtggaacaatctacttgcctgttataaa
actaaaaacaaggctcaagatttggaggagaacaagcagttagaagcaaagttgctttca
cagccattgccgaccagcattgctgcattcaagagccatcctctttttgctctgcggcgt
catttgctaaaatatgaagctgtatacccaccagatgtgccaccccttggttatgttaaa
agtgaagaagttttacctcgttcctctgtccattgtttgcacaccaaagagaaatggctt
caatctgcattaacagtaagagatggtgagcaaccttacaagatggttgcatcttactta
cttaataaaaagcttcagaggaactcagatacgccatctttagctttatttggagaatgg
gatgcagtcacacgaaagcgaaaaaatgatgaagaacaagagaaagaaaacaaagtaaag
cgtactttgagaaagactaccgttaagattaaatcttaccctgaggattctggacattta
tccgaggagaataatgattttgaaacaactgttacaaaaaaacgtaaaacaagaagcaat
aaaaccaaaccaaagacacagaaagtacagaaacaagatgttgttttatctgatgaggaa
gaggactttttgccggatcaaaaacctgactctgatgatgatgaggacagtgattttgaa
gctgtggagcataaaaaagcaaaaccttcgacatcaagaccgtcccagttaaagaaacca
ccaacaaaaaaaccagtgaagaaagcatctggaaccaaatcaaaatcaaacaatcaaaat
agtgaaaaagatatcaatgaatggctagaagtttatattgctaaggtcggttgggtgaca
gtggattgtgtgtctggtgttattaacgaaccagacgctattgaatcaaaaactacaaat
cctattcaatatgttctttcatttgatggcaacaatagtgtgaaggatgttacatcaaga
tatgcttctcagtggctcattatgacaaggaaactgagaataggttaccttgaaaaagat
tggtggaacaatctacttgcctgttataaaactaaaaaacaagttagttataattcagtt
tactcatacaatgttcaggctcaagatttggaggagaacaagcagttagaagcaaagttg
ctttcacagccattgccgaccagcattgctgcattcaagagccatcctctttttgctctg
cggcgtcatttgctaaaatatgaagctgtatacccaccagatgtgccaccccttggttat
gttaaaagtgaagaagttttacctcgttcctctgtccattgtttgcacaccaaagagaaa
tggcttcaatctgcattaacagtaagagatggtgagcaaccttacaagatggttgcatct
tacttacttaataaaaagcttcagagggactcagatacgccatctttagctttatttgga
gaatggcagtgtgacccttaccaacctcctgttgcggaagggggaaaagtaccaagaaat
gattttggcaatgttgatttataccagccatccatgctacccattggatgtgttcatttg
agattaccaaaccttcaagtcgttgctaagaaactaaacattgatattgcttctgctgtt
gttgggttcgatacacaccatgggtttccccatccaactttggatggttatgttgtgtgt
aaagagtttgaggaggtattaactgatgcttgggaagaggaagaaaccttggcagctgaa
cgtgcttttgcaaaacgcgaggaacgagttttgaaaaattggaaacttctttttcgtgga
gttcttactttagagcggctccgaaataaatacaaagatgttgaaccaatagattcgacc
ccaaatgaacaacaaacatcagcagacgagaagactcctgcaactaccagttcagcttgg
caaacagaaagattacagaatgaaaaggagaagcaaaaacctaaaaggaaaacgcgtgca
gcgaagaaaaagacaaataaaaacaattttccatatgaagtggaaaccatttga
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