Ciona intestinalis (yellow sea squirt): 100177029
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Entry
100177029 CDS
T01056
Name
(RefSeq) FERM, ARHGEF and pleckstrin domain-containing protein 1
KO
K06082
FERM, RhoGEF and pleckstrin domain protein 2
Organism
cin
Ciona intestinalis (yellow sea squirt)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH
RhoGEF
FERM_C
FERM_M
FERM_N
SOS1_NGEF_PH
FA
RHG20_PH
PH_11
PH_13
PH_20
IQ_SEC7_PH
Motif
Other DBs
NCBI-GeneID:
100177029
NCBI-ProteinID:
XP_009859507
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Position
8:complement(5383636..5404916)
Genome browser
AA seq
1045 aa
AA seq
DB search
MPHSSATVQVQMLDHSVHTYDVKVKSYGNMLLQSVMKDINLLESDYFGIQYTDRQGNRVF
LDPLKKIKSQITNISNVVLHFVVKFFPPDPGQLQEEYTRYLFALQVKQDIVDGLLPCNEN
TLVVMASYIAQSEFGDWNSFDCSDLSYLRDLKLLPPLVDMNEHDLLVKVSENHKIRTGET
KADSDYHLLDIVRRLEQYGLRLLPAKDQENTDIKLAVAHMGVVVFRGNSKINTFNWARIR
KLSFKKKRFLIKLRTETSVDKNGQNVGDILVFVMASRDTCKNFWRHCIEYHAFFRLEIHP
DPAPKPKIIKRGSTFRYSGKTQKQLHELVRNSNFRRTTFVRASARKPTIQPNNRTPQFNS
PAITVTPSVISTEHDDSGIPSPIKTEAEVNGHVTTTPDLTMASKGDGLVYSQKEEKPEEL
SPSSMATAAWQVESEHLHSSVVSVPSHETPDEAPDTTAQTAESQNESKSAEQVAPLPSPV
NLHSGGMSDPNDLTEVSALSVNGSVASSVVSPPGLLSTRGLKSTSSLSSETRYPSSQAYY
IAKEILTTERTYVKDLEVITTWFKSALQKEGSESLLPENTANQLFGGIGSLVALHQQFLC
TLDDRLSSWEGRGSTGATNDQLVDDLMLSHMLVLKKYLASLENGESLITAIEEVGDAEPK
FESLYREFELQKVCYLPFNSFLLKPMQRIAHYKLITERLMNYYEAESTLQQHPDLQSAYK
EACVLCTATQERLKRAHNLQKMAQLRRDLIGVEHLLKPNRTFIREGSLYKLSRKGFQQRL
FFLFSDCLVYTSKGVTSTNQFKVHAELPLQGMIIEVNEGESAVPNCFSILSASKTVIVAA
ATQEEMDKWLEDFSVAIARAGREMEMYESPLNNAAGSLSRLSMEQSSEDGEGSVRNSMER
LKPPMQHRSNATMHVCWHRNTSVSSSDHLVSLKNQLSGYLLRKFKNSNGWQKLWVVFTNF
CLFFYKSNQDESPLASLPLLGYTINSPTEADGIRKDFVFKLKFKTHVYFFRAESQYTYNR
WIEVISSATVTSQRTRLFSRMDSYQ
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgccgcattcatcggcaacagttcaagtccagatgttggaccattctgttcacacatat
gatgttaaagttaaaagctacggtaacatgctcctacagtcagtaatgaaggatatcaat
ttactggaatccgattactttggcatccaatacacagacaggcaaggaaacagagtcttt
ttggatccacttaagaaaatcaaaagccaaattacaaacatcagcaatgtggttctacac
ttcgtggtcaagtttttcccaccagaccccggtcaactacaagaggaatatacccgctac
ttgtttgctttacaagttaagcaggatattgttgatggcctgctaccttgtaatgagaac
acattggtggtcatggcttcatacatagcccaatctgagttcggagattggaattcattc
gattgttccgacttatcctacttacgagatcttaagctcttacccccactagtggacatg
aacgagcatgatttgctcgtcaaagtttccgaaaatcataaaattcgaactggtgaaacg
aaagcagactccgactaccaccttctagacattgttcgtcgccttgaacaatatggacta
aggctgctaccggcgaaagaccaggaaaacaccgacattaagcttgcagtggcgcatatg
ggggtcgtggtgtttaggggcaattccaaaatcaacacgtttaactgggcgcgaatccga
aaacttagctttaagaaaaaacgattcctgatcaaactaagaactgaaaccagcgttgac
aaaaatggtcaaaatgttggagatatcctagttttcgttatggcttcacgagacacttgt
aaaaacttctggcgtcactgtatcgagtatcatgcattcttccgactcgaaattcaccca
gacccagccccaaaaccaaagataatcaagagaggatctacgtttagatatagcggcaaa
actcagaaacagcttcatgagttagtacgcaacagcaacttccgtcgtacaacgtttgtt
cgagcttcagcgaggaaaccaaccatccaaccaaataaccgaacaccacagtttaactct
ccagctataactgttacgccgtcagtaatctccacggaacatgacgactctggtatacca
agtccaatcaaaacagaagctgaggtcaatggtcatgttacaaccacaccagacttaacc
atggcttctaaaggagatggtttggtttattcacaaaaggaagaaaaaccagaggagttg
tcgccttcaagcatggcaactgctgcgtggcaagttgaaagtgaacacctccacagcagc
gtagtatcggtgccaagccatgagacgcctgacgaggcaccagacaccactgctcaaact
gctgagtcacagaatgagtcaaaatctgctgagcaagtggcacctcttccatcccctgtt
aatctacattcaggtggcatgtccgaccccaatgatctcactgaagtttccgcactttcg
gttaacggatccgttgcatcgagcgttgtttcacctcctggacttctctccactagaggg
ctgaagtccacgtcatcgctgagcagtgaaacgcgctacccgtcatcacaagcttactac
attgcaaaggaaatacttacaactgaacgaacatatgttaaagatttagaagttatcaca
acatggttcaagtcagcactacagaaagaaggttctgaatctcttcttcccgaaaacacg
gcgaaccagctctttggaggaatcggatcacttgtggctcttcaccagcagttcctctgt
accttggatgatcgattatcgtcctgggaggggagaggatcaacaggagccaccaacgat
caactcgtcgatgatctgatgttgagccacatgcttgtgttgaagaaatatcttgcttcg
cttgagaatggtgaatcgctcatcacagcaattgaagaagttggagacgcagaaccaaag
tttgaatctctgtaccgggagtttgaactacagaaagtttgctacctgccgttcaactct
ttcctactcaaacctatgcagagaatcgcacactacaagttgattactgagcgcttaatg
aactactatgaggctgaatcaacattacagcaacatcctgatctacaatcagcttacaag
gaagcatgtgtgctctgtactgccacccaggagcgtctcaagcgagctcacaacctccag
aagatggcgcagttgagacgtgacttgattggcgtggaacatttgttgaaacctaaccgg
acttttattagagagggaagtttatacaaattatcgcggaaaggattccaacaaagactc
ttcttcctcttctctgactgccttgtatatacaagcaaaggggtcacttctaccaaccaa
ttcaaggtccatgctgaacttcctttgcaaggaatgatcattgaggtaaatgaaggcgag
agcgcggttccgaattgtttcagtattctctccgcttccaagacggtcatcgttgccgca
gcaacgcaggaagagatggataaatggctggaggacttcagtgtcgccattgcacgagct
gggagagaaatggaaatgtatgagtcgccccttaacaatgctgcaggatctctgagtcgc
ctctccatggagcaatcctcggaagatggcgagggctcggttcgtaactcgatggaaaga
ttgaaacccccgatgcagcatcgatccaacgccactatgcatgtctgttggcatcgcaac
acaagtgtcagctcgtcggatcacctggtctcgctaaagaatcaactaagtggatatttg
ttgagaaaattcaagaattcaaacggttggcaaaagttgtgggttgttttcaccaatttc
tgtctattcttctacaagtcaaaccaggatgaatcaccactagcaagccttccactgctc
ggttacaccatcaattcaccaactgaagccgatggaatacggaaagatttcgttttcaaa
ctcaagtttaaaacccacgtgtatttcttcagggctgaaagtcaatatacttacaacaga
tggattgaagtgattagcagtgccactgtgacgtcacagagaacccgtctcttcagtcgc
atggatagctaccaatag
DBGET
integrated database retrieval system
