Ciona intestinalis (yellow sea squirt): 100177084
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Entry
100177084 CDS
T01056
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
100177084
Enzymes [BR:
cin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100177084
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
U-box type E3
100177084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-C3HC4_2
U-box
zf-C3HC4_3
zf-CCHC
zf-RING_5
zf-C3HC4
zf-RING_2
YfbR-like
zf-C3HC4_4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
100177084
NCBI-ProteinID:
XP_026689737
LinkDB
All DBs
Position
3:1340632..1352027
Genome browser
AA seq
1865 aa
AA seq
DB search
MSAIHYKFSCSTEYKNVTFDGISLSLVDLKKSIMEKQKLKSTEVDLQITNAQTLQVYKDD
LALIPKNTAVLVRRIPLGPVRDSKVYVVKRSEKGTSSSYSVASKSAQDTSSTQPKLSFEE
LAKTSNLAEANASEEDKIKAAIAQSTNEYDPANFVRPPRHGTYNKYTSNNVGQTSIMRCF
RCNQMGHYSTQCSLPKVDPDRQPKVYRHATGIPRSHMVEVTQKSKGAMLTTDGKYVVPYM
DKKGYEVGKKEKPPFIPQSETKSIEDEEEDEPIPDELICLLCKDLLVDAVVIPCCGNSYC
DECIRNALLDSDDHQCPTCHKQNISPDSLIANKFLRQAVNKFKNDTGIAKKRSNAPVWPR
PAASESTKPKQTNIPMKVSYGPPKAGSQLDRPTTSGAYVVKAKTDQIAPRGYSIVKRTNE
IRSSSPVDSNQPIRIKLGGSSSEVLPSSATTTPSDQSTTTSITPQSENYTFNSTPDTTEE
KPKAVVEPGPPGITPPVAKVVRPLEENSEQKDEKDEIVNDVPEKLSGIHPLPHDKNETNE
QPDKQPEHTDSFEAVKAQTLDINIKPIEDIPKFEQPNSINPNIPQIEHPVVTKPQAVITP
HVPPTNLPLPILPPVNINIPPPSLPRMPTLLQPTSQQPVSFTQSILGPPPVISKSASHPS
LFQRPPPPFPFPPFFPLGSVPFTQPPPGFPPNLPPPGINIQSLIQGPPPSSIPTLTGLIP
SVSSSSSHIASQQRKQRSPPPRKHPDDWRRSNHRGQRTKLDLMSDEFTENLSKNKTRRRR
RRSYSSSSYSDSSSSNSSGSSYSSGSSSWSSSSYSRSRSTSPRNKGYKKKRSSKVRSRKK
SRPRSRERHDSTRGRKHTKRKHKSPPRSRKYSRSNSRSPTPRKDGRGRSDRGRSPPPSRS
KDARSRGNKRHNKNSSHPPIPVIGGTVSNPVIPGLPSKEAADYERDQALYAHYRQAYERD
WYEKGVMPPPPYDRFVQPRYSRSPSPPGTGSNPLLPGSGQWREEGKFHPHFNQQSAQLYK
DNSNFYAPVGNRLQAIASGYDNAMVDDVSPRSSRRYDDEALRGRSRRNVDSRRYVRRGES
SDKRVRTSSPDRVVDDGDATPVRDERPPPDEVEIIKKSESRKSRDNDRRSRRDDRRNKDE
KNRLKEERRYSSRDSHYNRHHHKESSSKPRSSSKSLKSEEKSTSYSSKRTSDDKSSKSSK
SSKISKSTSKPKPVSSKKKISITLKSIPGVNNENNNEATNVTPEPVSQAPSNEISETSAK
SASNKIVEKNSYGDTCEPQSSVQNKSPESKTGDDSAKLKGFTNSTFKEISPLETTAEHNV
ENDLKSKQEKHNETLQEDASDENIPEVVSAADEDESKMKSSVEHEILNSQSQIEADANAE
GSDKVSDKKDSNKVLGNKEENPIVYHTDDMQSKDVKRVPSPIIFTKTDETFENNLKSSDK
VPAPSTHRRKVKEVFSVEDKQRLSNLIVPNAKPSHSKSKSHLVPREKSKKSLRKKSKDKS
NTEPSGKEKKFVEYDGTAPPPPGDELVKINLPKSRWDDSDDGIPHETSEATGKSRRIRIK
RKSLQSEVIKDDKMMKGVSDDLASTVGKSSSIAEHSVDAKILITLPQNDDKQNQDVKNRQ
VSLVNTENTKQDVEEKKEIHVSVKGKALNVTSMRSSRGEEYHDEDALDLQPLSGLSNTES
ISDKTEKKKKKKKKKKHKNKSKKYSHESKSEVKDAPLSDTAQYEKEFTPCEEDAAAENNK
RKHRSDSGSPHQKTKSKKSGKEMVDRKRRRRASDYSDDGRMENSDDDETTKRNSRRHYSR
ERSHRGRSSSIRDEDYSQRKRRISSERKSRDRSRNRGKKRKKDRRRHRKRKYSYDQSPST
SYSDT
NT seq
5598 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcaatccattataaattctcgtgcagtacagaatacaaaaatgttacttttgat
ggaattagtctgtcccttgtggaccttaaaaaatccattatggaaaagcaaaaacttaaa
agtacagaagtggatcttcaaattacaaatgctcagactttacaagtgtacaaagatgat
cttgcattgataccaaaaaatacagcagttttagtaagaagaatacctcttggtcctgta
cgagattcaaaagtttatgttgtgaaacgtagtgaaaaaggtacttcctcatcttacagt
gttgcatcaaagtcagctcaagacacaagttccacacaaccgaaactaagctttgaagaa
cttgcaaagacaagtaaccttgctgaagctaatgcatctgaggaagacaagattaaagct
gccattgctcaatcaacaaatgaatatgatcccgccaattttgtaagaccgccacgccat
ggtacttacaataaatacacaagcaataatgttggccaaacttcaatcatgagatgtttt
cgttgcaatcaaatgggacattattcaactcaatgttcgttaccaaaagttgatcctgac
cgacaaccaaaagtttaccggcatgccacggggattccccgaagtcacatggttgaagta
acgcagaagagtaaaggagcgatgttaaccaccgatggcaaatatgtcgtcccatatatg
gacaagaaaggatatgaagttgggaagaaagagaaacctccatttattcctcagagtgaa
acgaagtcgattgaagatgaggaagaagatgaaccgattcctgatgagttgatttgtctt
ctttgtaaagatttgctcgtagatgctgttgttattccatgttgcggaaacagctattgt
gatgaatgtatcagaaatgcattacttgattctgatgaccaccagtgtccaacttgccac
aaacaaaacatttcacctgattcattgattgccaacaagtttcttcgacaggcagtgaac
aagtttaaaaatgacacgggaattgcaaagaagcgatccaatgcccctgtgtggcctcga
cctgctgcatcagaatctacaaaaccaaaacaaacaaacattccgatgaaagtgagctac
ggaccaccaaaggcaggttctcaacttgatcgtcccacaacatctggtgcatacgtcgtg
aaagctaaaactgaccagatcgctccccgtggttactccattgtaaaaagaaccaatgaa
attcgaagctcatcacctgttgattcaaatcaaccaatcagaattaagcttggaggatca
tcatctgaggtacttccatcatcagctacaaccacgccatcagatcagtcaacaacaact
agtattactccacaaagtgaaaactatacttttaactccacacctgatactactgaagaa
aaaccaaaagctgtggttgagccaggaccacctggtattacacctcccgttgctaaagtt
gtacgtcctcttgaagaaaacagtgagcagaaagatgaaaaagatgaaattgtcaatgat
gttcctgagaagctgagtggaatccatccacttccacacgacaaaaatgaaactaatgaa
caacccgataaacaacctgaacatacagattcattcgaagctgttaaagcacaaacatta
gatataaatataaaaccaatagaagatataccgaagtttgaacaaccaaattcaataaac
ccaaatattccccaaatagagcacccagtagttaccaaaccacaagctgtcataacaccc
catgttccaccgacaaacctcccacttcccattctaccaccagttaacataaacatccca
ccaccaagtttaccaagaatgcccaccctactccaacctacatcacagcaacctgttagc
ttcacacagtcaattcttggaccaccacccgtaatttcaaaatcggcctcacatccaagt
ttgttccaacgtcccccacctccttttccattcccaccattcttccctcttggatccgtt
ccctttactcagccacctccagggtttcctccaaatcttcctccaccagggatcaacatc
caatcattgattcaaggtcctccaccatcgagtattccaacactgacaggacttattcca
tctgtatcatcatcatcgagccatattgcgagtcagcaacgcaaacaacgatccccacct
ccgagaaaacatccagatgattggaggaggagtaaccatcggggccaacgaaccaaactt
gatttaatgtcagatgaatttactgaaaatttgtccaaaaacaaaacaagaagaagacgt
agaagaagttactcatccagctcatatagtgattcatcatcaagtaactcatcaggttct
tcatattcatctggatcctcatcatggtcaagtagttcatattcacgaagtcgctcaaca
agtcctcgtaataaaggatataagaagaaaagatcctccaaagttagaagtagaaaaaag
agtcgtccacgatcgagggaaagacatgattcaacccgaggcagaaaacatactaagcgg
aaacataaatctcctccacgcagcaggaaatacagtcgtagtaattcccgttctcccact
ccaaggaaagatgggagaggaagatcagatagaggaagatctcctcctccatcacggagc
aaagatgcacgttcacgtggcaacaaacgtcacaataaaaattcctcgcatccccccatt
cctgtgattggtggaactgtttcaaacccagtcataccaggtcttccatcaaaggaagct
gcagattatgaaagagatcaagcattatatgctcattatagacaagcatatgagagggac
tggtatgagaaaggcgtgatgccacccccaccatacgatcgcttcgtacaaccccgatat
tctcgatcaccgtcgcctcctggtactggaagcaacccactgctgccaggtagtggtcaa
tggcgtgaggaagggaagtttcatcctcattttaaccaacagtcagctcaactatacaaa
gacaacagcaatttttatgctccagttggtaatagattgcaggcaattgcaagcggttat
gacaacgcaatggtggatgatgtttcaccgaggtcttctcgaagatatgatgatgaagct
ttgcgtggcagaagtagacgtaatgtggattcacgtagatatgtgagaagaggagaatcg
agtgataaacgtgtgaggacatcttctccagatcgtgttgttgatgatggggatgctact
cctgttcgtgatgagagaccgcctccggatgaagtggagatcattaaaaaaagcgagtca
cgcaagagcagagataatgatagaagaagcagaagagatgatagaagaaacaaagatgag
aagaatcgattgaaagaagagcgaagatattcttcgagggattctcattataatcgtcat
catcataaagaatcttcatcaaaaccaagatcatcttccaaaagtttaaaatctgaagaa
aaatctacatcttactcttctaaaaggacaagtgatgataaatcctcaaaatcctcaaaa
tctagtaaaataagcaaatcaacctcaaagcctaagcctgtatcaagtaaaaagaaaatt
tctattacactgaaaagcataccaggagtaaataatgaaaataacaatgaagcgactaat
gtaacaccagagcctgtttctcaagcaccaagcaatgagatttccgagacctcagccaag
tcggcaagtaataagattgttgaaaagaattcctatggtgacacttgtgaaccccaatct
tctgttcaaaacaagagtcctgaatccaaaacaggtgatgattcagctaaactaaaagga
tttacaaattccacatttaaagaaatttctcctttggaaacgacagcagaacataatgtt
gaaaatgatttaaaatctaaacaagagaaacataatgaaactttacaggaagatgcttcg
gatgaaaacattcctgaagttgtttcagctgctgatgaggatgagagtaaaatgaagtcc
tctgtagagcacgagattttgaattctcaatctcaaattgaagctgatgccaatgctgaa
ggaagcgataaggtgtcagataaaaaagacagcaataaagtgttgggtaataaggaagaa
aatccaatagtttaccatacagatgatatgcaaagtaaagatgtcaaacgagttccgtct
cccattatatttacaaagactgatgaaacttttgagaacaacttgaaatcctctgacaaa
gtaccagcaccttcaacacacagacgcaaagtaaaagaagttttttcagttgaggacaaa
cagcgcttgagcaaccttatcgtaccaaacgccaaaccatcgcattcaaagtcaaaatct
cacttagttcctcgagaaaagagcaaaaagtcacttcgaaagaaaagtaaagataaaagt
aatacagaaccatccgggaaagagaagaagtttgttgaatacgatggcacagcgccccca
cctcctggagatgaacttgtgaagattaatctaccaaaatcaaggtgggatgattcagat
gatggaattccccatgaaacatcagaagctacaggtaaaagtaggaggattaggatcaaa
cggaaatctcttcaaagtgaagtcatcaaagatgataaaatgatgaaaggtgtttccgat
gatcttgcttcgacagttggtaaatcttcgtcaatagctgaacattcagtggatgcaaaa
attctgatcactcttccacaaaacgatgataaacaaaatcaagatgtaaaaaatcgccaa
gtgtcattagtaaataccgaaaatacaaagcaagatgttgaagagaaaaaagaaattcat
gtttctgtaaagggaaaagctctcaatgtgacatccatgaggtcttctcgtggggaggaa
tatcatgacgaagatgctttggatcttcaacctttatcaggtttaagtaacactgaatca
atttcggataaaactgagaagaaaaagaagaagaagaagaaaaagaagcataaaaataaa
tctaagaaatattcccatgaatccaaaagtgaagtgaaagatgctcctctttcggatact
gcacaatatgaaaaggagtttactccctgtgaggaagatgcagcagcagaaaataataag
aggaagcatcgaagcgattcaggttccccgcatcagaaaactaaatcaaagaagagtggg
aaggagatggttgataggaagcgaaggaggcgagcatctgattatagtgatgatggaagg
atggaaaactccgacgatgatgaaactacaaaaagaaattctagacgtcattattcgcgt
gaacgatcacatcgaggtcgctcgtcttcaattcgtgatgaagattattcacaaagaaag
cgacgcatttcaagcgaaagaaagtcacgtgaccgctcccgaaaccgcggaaagaagcga
aagaaagatcgacgtcgacatcgtaaaaggaaatattcgtatgatcaatctccatcgact
tcttactctgacacttaa
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integrated database retrieval system
