Ciona intestinalis (yellow sea squirt): 100177149
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Entry
100177149 CDS
T01056
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100177149
Membrane trafficking [BR:
cin04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
100177149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
Motif
Other DBs
NCBI-GeneID:
100177149
NCBI-ProteinID:
XP_018669069
Ensembl:
ENSCING00000009432
LinkDB
All DBs
Position
9:complement(4967575..4983871)
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AA seq
1718 aa
AA seq
DB search
MTSLMELIRRLHEERLFIKSEQDAVWKLNDEVRSRVEALSHTYWVTRQHYLNLSRLIVNS
SQETPALCNRRSKQLDNIEFVDGYKELGYQESMYSQFIEAFINNPTFAAACLAYGDKLGL
DSTSDVARTMVMGCYGNNMVADDHRQLLELIETLMLLQLATIEQPSRLLQKGTSAFCTVF
KLFAESLWSGKLFLMSALHQPIMEIIMDHELFLETNPQKVLARLSSNEIAKRFGSQDTPA
FQEKLKQHVERTEQALIDICSSFVDSLLQTMTCFPQSLRWIISRAFHIVKDAGVVSESEA
RSLSADFLLHQFVCPAIVNPELYGVTGDVPLSDLTRFNLMQVAQVLQVMAHWNETSQQND
SFYSKLDKGPMRRLIDVVISPSNQDSTPDNIVSQHTHTNRSVFITIKQLVQLIHFLNDLQ
KSDVRGVDQSTLAEILNHLPDNPPASVVKEMQSNVQPPDDNAASRGNGNSGYLTPSGGSA
GDLQGMNNSGNLTPAKKIFSKSTKIKNRSPKRDESLEVNEDIAAGDVSSNGNNTQPDTMG
VVLVMSLSNSGPDQQPGTLGEAEVLELQATQTLPPNVSTIEAASLDDASLTEADGLEKRS
RFSLYSGGSDLSEVGEELPTEDGISRTSGSSSIDLDQQEEAAVDDTSSFHAISSHGNQDD
DDDGGDQESVTHANNDEALKALRRKLPTSRESIEDKMRKFEIRQELGVRFADPGVTDPRR
DEPGNQPAPVDARSDTWSMDVYASDSEAPAEQDSQSERLDEISEDPPGRLRPSNNGSISS
FLALARDEDSRSDVWSVEVLPSDSEPPDIRSEDRLQELESETGTAASEDVMEDNRSRAST
PGLSAASGFSGVSGLSLVSDNIQAKASDEQWSHYDRSYGKCPSSISPDADDLINRGGGSG
ESSHTGGGGSSNSSEPDRAVPSSSSASASPRLAANQSPLLMSSRADGNIRTSASFDAKRV
EKSVAWNIPKQEDAPDSGSSPMDFEHINTIKRSPYKKSSKDSRDNASFTPPPRPPPPQHK
NNPTPTQPFTPEVLPQPPPMQTSKIVAWDETPDNKPTDKPLQTVNHNQDSPFVVVNTHPT
HDDVLSTFDPLSKNNSAIPKINMDSSQNQTDEQEKVPEIKPSDTGAATTDRLVSVNTANN
QSTSAPLATKPEEGNNENKPHKNNLPQGARPKEPNVQDGRNKPLDRKKSWWKTNRFPSFA
KRKGGLPRLNGGYDGTASSSFYNAGSSLEKEIQLNDSELSSPGEDILQKYRQKVSNQQNE
NGAGEPGLDPGIYSGESPDHQNISGSTATDVQSPLSDDTVTTATRGASSNSSYHGTWHGT
HDIKSRATPATCPMAKGESKEDTKRKLRKALSLTEPPPEPPSPALLLLGVMSPNSSDALF
VEKRGGRKNDRTNQKDHLMSFLRGAHAEALMLHDRSRIAHLDEVLRSISQLDDAGCRAIL
QSMWNDCNHRSSYAAYLIRARQHLLSTSSYLQHMTTCAEMDKTICRKFFTSQCVRIFLKE
KEKVVWDFRNSFMRLGASDEKVSLVGSFLSWINSRMGEDRIWEGASDEQMLEAESCVERI
IFTYIDKHAMFPNGDGDLLRDQLFHQHISRLSAVLTPLHPSLQVRRKYLKESPWLSAQRE
ARMLSAHRSPRGKLDAALRCCRAVMHLLKLADESEAPGADDFTPVLVFVLIKANPAHLLS
TVQYVTSFVGDQLTGEESYWWMQFTAATEFIKTIDERK
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtttaatggaattaataagacgactgcatgaagaacgactgtttattaaatct
gagcaggatgcagtttggaaactaaatgatgaagttcgatcacgtgtggaagcattatcg
catacatactgggtaacgaggcaacattacttgaatctaagccgcttaattgtcaacagt
tcacaagaaacaccagctttatgcaatcgccgatcaaaacagttggacaacattgagttt
gttgatggatataaagaacttggttaccaggagtccatgtactcacagtttattgaagcc
tttattaacaatcccacattcgccgctgcatgtttggcttatggagataaacttgggtta
gattccacatctgatgtagccaggaccatggttatgggatgctatggtaataatatggtt
gcagatgatcacaggcaattacttgagttgattgaaacattgatgttgctacaacttgcc
actattgaacaaccaagcagattgctacaaaaaggaacatcagctttctgcacagtgttc
aaactttttgctgaatccttatggtcaggaaaactgtttcttatgtctgcgttacaccaa
ccaataatggagatcattatggatcacgaactattccttgaaacaaacccacaaaaagtt
ctagcccgactcagctccaatgagattgctaaaaggtttgggagccaagatacccctgcg
tttcaggaaaaactgaagcagcatgttgaacgaacagagcaagcattgattgacatttgt
tcttcatttgttgatagtttgttacaaactatgacgtgcttcccacaaagcctgaggtgg
attatatcgagggcgtttcatattgtgaaagacgcaggtgttgtatcagaatctgaagca
agatcattaagcgctgattttcttctccatcagtttgtttgcccagctattgttaaccct
gaattatacggggtaacgggggatgttccactaagtgatctaacaaggtttaacctaatg
caagttgctcaggtattacaagtgatggcacactggaatgaaacttcccaacaaaatgat
tcgttttactcaaagctagacaagggcccaatgagaaggttaatagatgttgtgattagc
ccaagcaaccaagattcaacgcctgacaatatagttagccaacacactcacactaatcga
tcggtattcatcacaattaaacaactggtgcaacttatacatttccttaatgatctgcag
aaatctgacgtacgaggcgtggaccaatcaacccttgccgagatcttgaatcatctcccc
gacaatccacctgcaagtgttgtgaaggagatgcaaagtaatgtccaaccacctgacgat
aatgctgcatctcgtggcaatggtaattctggttatcttacaccatctgggggatcagct
ggtgacttacaaggcatgaataactcagggaatcttactccagctaaaaagatattttca
aaaagtacaaaaataaagaatcgatcaccaaaacgagatgaaagtttagaagtgaatgaa
gatattgcagccggagatgtttcttctaatggtaacaacacccaacctgatactatgggt
gttgtattagtgatgtcacttagtaatagtggacctgatcaacaacctgggactctgggc
gaagctgaggtattagaactacaagccacccaaaccctcccacccaatgtatcaaccatt
gaagctgcttcattggacgatgcttcactaactgaggctgacgggctggaaaaaaggtcg
cgattctcactttattctggaggctcggaccttagtgaggttggtgaggagcttccaact
gaggatggaatctccaggacttccggatcatcttccattgatcttgatcagcaggaggaa
gcagctgtggatgatacaagcagcttccatgctattagctcgcatggaaaccaggatgat
gatgatgacggtggtgaccaggagagcgtaacgcacgcaaacaacgacgaagctttaaaa
gctttaaggagaaaactaccaacctcacgtgagagcatcgaagacaaaatgcgaaagttc
gaaatccgtcaagaacttggggttcgtttcgcggacccgggtgtaactgacccacgaagg
gatgaaccagggaaccaaccggcccccgtggatgcgcgcagcgacacatggagcatggat
gtttatgcttcggactctgaagctcctgctgaacaggattcgcagtcggaaagattggat
gaaatatcagaggatcctccaggaaggttgagaccaagcaacaacgggagcatcagctcc
ttccttgctcttgctcgtgacgaagattcaaggagtgatgtatggagtgtggaggtgctg
cctagcgacagtgaacctccggacattagatcagaggatcggctgcaggagcttgaatcg
gagacggggactgctgcatctgaagatgtgatggaagacaacagatcacgtgcgagtacc
ccaggattaagcgcggcatccgggtttagtggagtatcgggtctaagtcttgtatctgat
aatattcaagctaaagcaagtgacgagcaatggagtcattatgatcgtagttatggaaaa
tgtccttctagtattagtcccgatgctgatgacctgattaacagaggaggggggtctggg
gaaagcagtcacactgggggagggggaagttctaacagtagtgagcctgatcgtgctgtg
ccgtcatcatccagtgcttccgcatcaccaaggttggctgccaaccaatctcctttattg
atgtcctcgcgagcagatggcaacatccggacttccgcatcgtttgatgcgaaaagagta
gagaagagcgtggcgtggaacattccgaagcaagaggacgctccggatagcgggagttct
ccaatggactttgaacacatcaataccatcaagaggagtccttacaagaagtctagtaaa
gattctcgggataatgcatctttcaccccaccaccgaggcccccacccccacaacataaa
aacaaccccactcccacccaacccttcacccctgaagtattaccccaacccccacccatg
caaaccagcaagatagttgcatgggatgaaacaccagataataaaccaacggacaaacct
ctacaaactgtcaatcataaccaggactctccctttgtagtggttaacacacaccccact
catgatgatgtgctaagtacatttgatccactcagcaagaataattcagccattcctaaa
attaacatggattcttcacaaaaccaaacagatgagcaagaaaaagtcccagagataaaa
ccatcagatacaggagctgctacaaccgataggcttgttagtgtcaatacagcaaacaac
caaagcacctccgcacctcttgccacgaaaccagaagaaggtaacaatgaaaataaacca
cataagaataacttaccacaaggtgcaaggcccaaggaaccaaatgtacaggatggtagg
aacaaaccactggatcgcaagaaatcttggtggaaaacgaaccgatttccgagctttgcg
aaacgcaagggtgggttaccaaggttaaatgggggatatgatgggacggcatcgtcaagc
ttttataatgcaggatcttcactggaaaaagaaattcaactgaatgattctgaattaagc
tcccctggtgaagacatcttacagaagtatcgacagaaagtatcgaaccaacagaatgag
aatggagcaggggagcctgggttggatcctggtatctactcaggggaatcacctgaccac
caaaatataagcggatccacagcaactgatgttcaatccccactaagtgacgatactgtg
acaactgcaacccgtggcgcgtcatccaattcctcataccacggcacgtggcatgggaca
catgacatcaaatctcgtgccacgccggctacatgtcccatggctaagggagaatcgaaa
gaagacacgaagagaaagctaaggaaagccctctccttgaccgaaccaccccctgagccc
ccgtcccccgccctacttctacttggggtgatgtctcccaactcatctgatgctttattt
gtggagaaaagaggggggaggaaaaacgatcggacaaatcagaaagatcacttgatgtct
tttctccgtggagcgcatgctgaagccctcatgctccacgatagatcaaggattgctcat
cttgatgaagtgttaaggagcatctcccaacttgatgatgcgggatgcagggccatcctc
cagagcatgtggaatgattgcaaccaccgttcatcatacgcagcttatttaatacgagca
cgacaacatctgttatcgacgtcatcgtatctacaacacatgactacgtgtgctgagatg
gataaaacaatttgcaggaaattcttcacctcccaatgcgttcgtatcttcctcaaagag
aaggaaaaagtggtttgggactttaggaatagtttcatgaggttaggagcatcagatgag
aaggtatcacttgttggttcgtttttatcgtggatcaactcgaggatgggagaggatcgg
atatgggaaggcgcaagtgacgagcaaatgcttgaagctgaaagttgtgttgaacgcatc
atcttcacttacatagataaacacgccatgtttcctaatggagatggagacttacttaga
gatcagctgttccatcaacatatttcacggctctcagctgttctaacacctctccatccc
tccctgcaagttcgacgcaaatatctcaaagagagtccgtggttatctgcacaaagagaa
gcgaggatgttatctgctcatagatctcctcgtgggaagctggatgctgctctccgatgt
tgcagagcggtgatgcatcttcttaaacttgcagatgaaagtgaagctcccggtgccgat
gatttcactccagtgcttgtgtttgtattgatcaaggcaaacccagcccatctactttca
acagttcaatacgttaccagtttcgtgggcgatcaactaacgggcgaggagtcttactgg
tggatgcaattcacggccgctactgagtttattaaaactatcgacgaaagaaaataa
DBGET
integrated database retrieval system
