Ciona intestinalis (yellow sea squirt): 100177182
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Entry
100177182 CDS
T01056
Name
(RefSeq) LOW QUALITY PROTEIN: syntaxin-binding protein 5-like
KO
K08518
syntaxin-binding protein 5
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100177182
Membrane trafficking [BR:
cin04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
100177182
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
100177182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WD40_Prp19
Beta-prop_EML_2
Beta-prop_HPS5
WDR55
ANAPC4_WD40
WD40
Beta-prop_NUP159_NUP214
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
EIF3I
Synaptobrevin
Lgl_C
FKBP15
Motif
Other DBs
NCBI-GeneID:
100177182
NCBI-ProteinID:
XP_002127809
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All DBs
Position
12:3986943..4004184
Genome browser
AA seq
1124 aa
AA seq
DB search
MPRVIFKRVLEALSGNTSSSSSGGNSSNHVEPNFSSDLSTDQFQPYKIARHGFPYRPTAL
AYDPVQKLLAIGTYTGTIRILGQSGVDRYIAHETDKPVIKLIFLNNQGALVSVCADDTIH
LWNLRQTQPAILHSLKFNRERITCTYIPHGSKWLYIGTDKGNVHLCHVESFTLSGYSISW
NKAIELSQKSHPGQVIEIAENPCNESRIIIVFQCGTFVLWDLKQKEALQRYYCNNTIHHV
CWHHEGKQFMCSHNDGIISLWSVSNKDKPISFQRPHGKESSGSISYHAIEKVDWLSCTDA
ESLVIFSGGLAEEGDTQPTITVMQGKSITVLEMGSPVVDFVAVSHTPWKCDNQDPTDLVI
LLNKELVVLDLKTPGYPCVEPPHALDLHDSPVTCLEFYLDTNSTLLPTLCEIAATKPQCK
DIFKKEWPLGGGECNLDEYEGIPELVVSGHAHGSVRFWDATAGNLKPIYKLRTYKIFHRS
SRESSTTEEEDEAYRITNIALCPHTRTLVTANISSTLIIYKLHSSEIHTEICTLSINVMD
EIGMLVPPAPDHNHVSNLVGLHGEASSNEDLTQTSSYYTVTAPSATTTTTTAENENHVVQ
KSRLRSKSGNFRQSPGFQSDFICMFTDDGTISPISIFISLSTSNNLISIGTIASLSVIDI
TQKTCLFNMNTNNILMSIDGKMHSSSKLKLQGLTDTSPSALSTDHSFSKSQLEKEDSLNS
DSAPSAMPSKSKRYIKISKKNTSLSLEKSIGSMESSDDHMLSRASSSTESDHGRSNEAVT
YLCFSCTNIKKHSNTTVPCMWVGTQSGCLFSIIFNQSNHENRASNRVTSSLSGTLLQLHG
ALVSCLFINSTGQVVTDHMYTWTPQTSVEEKDHVTDHDGEISRDIHFMMVTSERQVKIFT
LPSLSCVHVFELPIECGQFIHSSVDTLINGTCAAGYTSSGHIVVLGLPSLNLLLNVPYLP
PNDDRIAHTFSFTSDGQAMFLPNPTELQRIAYYVGIHENVQEMVGHLFVPCEDIEKPTTG
FFKGLFGGGYTSIDRENLFGEGVNGKTKAIAKYIPGTGGSSFEGFRHGNVGSEFHQLKNK
VLERGQRLGELEEKSQKLVDSASRFAAVSNEVMHKYKNKRWYQM
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgccaagagtaattttcaagcgagttttggaagctttgtcgggcaatacatcttccagt
tcatccggagggaattcttcaaatcatgttgaaccaaactttagttcagatttgagtacg
gaccaatttcaaccttataagattgcaagacatggctttccataccggcctacagcattg
gcttatgatccagtacaaaagcttcttgctattggaacatatactgggactattcgaatt
cttggtcagagtggcgtggatagatacatagctcatgaaacggataaacccgtcattaaa
cttatattcttaaacaaccagggtgcactagtatctgtgtgtgcagatgacacgattcat
ttgtggaacttacgacagacacaacccgcaatccttcactctttgaaattcaacagagag
cgaataacatgcacctacatcccacacggaagcaaatggctttacattggtacagacaag
ggtaatgttcacttgtgtcatgtagaatccttcacgctatctggttactcaatcagttgg
aataaagcaattgaactttcccaaaagagccaccctggtcaagtgatagaaattgcggaa
aatccatgcaatgagtctcggattataattgtgttccagtgtggtaccttcgtcctatgg
gatttaaaacaaaaagaagcactacaacgttattactgcaacaatacaatccaccatgta
tgttggcaccatgaagggaaacagttcatgtgttctcacaacgatggcattataagtctg
tggagtgtttcaaataaagataaacctatatcattccagaggccacatggcaaggaatct
tctggtagcatcagttaccatgcaattgaaaaagtagattggttgtcctgcaccgacgct
gaatcgttggtgatattttctggtggccttgcagaggaaggagacacccaacccaccatt
acagtcatgcagggcaagtcaatcactgtacttgagatgggatctcctgtcgttgatttt
gttgctgtttcacacacaccctggaaatgtgacaaccaagatccaacagacttggtgatc
ctcctaaacaaagaacttgtagtgcttgatctgaagacccccggatacccatgtgtggag
ccacctcacgcattagaccttcacgactcccctgtcacatgcctggagttttaccttgac
acaaactcaacattacttccaacattatgtgagattgctgcaactaaaccacaatgcaag
gatatctttaaaaaagaatggccattgggaggaggtgaatgcaacttggacgaatacgaa
ggaatacccgagttggttgtatcaggtcatgcacatggttctgttcgcttctgggatgct
actgcaggtaacttaaagcctatctacaaactccggacctacaagatcttccatcgctcc
tccagggagtcctccaccactgaagaggaggacgaggcatacaggatcaccaacattgct
ctttgccctcacacacgaacactggtgacggctaacatcagttcaacgctcattatatac
aaacttcactcttcagagatacacacagaaatctgcacgctgtcaatcaatgtgatggat
gagattggcatgttggtacctcctgctcccgaccacaaccatgtatctaacttggttgga
ttgcatggagaagcatccagtaatgaagacttgacacaaactagctcttattatacggta
acagcacctagcgctacaacgacaaccactactgctgaaaatgaaaaccatgttgttcaa
aagtcacgactcagatctaaaagtggaaacttccgacaaagtcctggttttcaatctgat
ttcatttgtatgttcaccgatgatggtacaatatctcctatctctatattcatatcttta
agcacttcaaataatcttatttcaattggtacaatagcatcactttctgtgatagatata
acacagaagacttgcttatttaatatgaacacaaacaacatattaatgtctattgatggg
aaaatgcattcttcatctaaactcaagttacaaggtttaactgacacctctccttctgca
ctttcaactgaccacagtttctctaaatcacagttagaaaaagaagattcgttgaattct
gatagcgccccgtcagcaatgccgagtaaaagtaagcgttacatcaaaatatcgaagaaa
aatacttcgctgagtttggagaaatctattggaagcatggagagttcagatgaccatatg
ttaagcagagcatcaagctcaacggaatccgaccacggccgatctaatgaagccgtcact
tatctttgcttctcatgcactaacatcaagaaacacagcaacaccacggtcccatgtatg
tgggtgggaacccaaagtggatgtttattcagcataatattcaatcaatccaatcacgaa
aatcgagcttcaaatcgtgtcacaagctctctaagtggtaccttattacagttgcatggt
gctttagtgtcttgtttatttatcaactcaactggacaagtcgttactgaccatatgtat
acatggacaccacaaacatctgttgaggaaaaagatcatgtgactgatcatgatggtgaa
atatcacgtgatattcatttcatgatggtaacatcggaacgacaagttaagatttttact
ctcccaagtttatcatgcgttcatgtgtttgaacttcccattgaatgcggacagttcatt
cattcttctgttgatactttaattaacggaacatgtgctgctggttacacctctagtggt
catattgtggtgctaggactgcccagtttaaatttgcttcttaatgtgccatacctgcct
cccaatgatgacaggatagctcatacattctctttcacaagtgatgggcaagcaatgttt
ctgccaaacccaactgagttacaacgtatcgcttattatgtgggaattcatgagaatgtt
caggagatggttggtcacttgtttgtaccttgtgaagatatagaaaaaccaactaccggg
ttttttaaaggattgtttggtggaggttatacaagcattgatcgtgaaaatttatttggc
gaaggtgtcaatggcaaaacgaaagccatagcaaaatacatcccagggaccggtggttct
agttttgaaggtttccgacacggtaatgtaggttctgagttccaccaacttaagaacaag
gttttggagcgagggcaaagacttggtgaacttgaggaaaagtcacagaaacttgtagat
tctgcaagcaggtttgcagctgtttctaatgaggtcatgcacaagtacaaaaacaagagg
tggtatcagatgtaa
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integrated database retrieval system
