Ciona intestinalis (yellow sea squirt): 100177218
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Entry
100177218 CDS
T01056
Name
(RefSeq) DNA replication ATP-dependent helicase/nuclease DNA2
KO
K10742
DNA replication ATP-dependent helicase/nuclease Dna2 [EC:
5.6.2.3
3.1.-.-]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100177218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cin03032
]
100177218
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100177218
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
100177218
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
100177218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
Dna2
AAA_11
AAA_19
AAA_30
Dna2_Rift
Viral_helicase1
UvrD-helicase
DEAD
AAA_29
nSTAND3
CbiA
SRP54
FtsK_SpoIIIE
T2SSE
MobB
ATP_bind_1
ResIII
Motif
Other DBs
NCBI-GeneID:
100177218
NCBI-ProteinID:
XP_018669895
LinkDB
All DBs
Position
12:complement(3685564..3703200)
Genome browser
AA seq
1325 aa
AA seq
DB search
MNKKTKSGKLSRSQGNILSFCSTRTAEDLLRSKDGLKQGKIDPFMKSKNSPGFYLKSKRK
TETSSSEMSSSPAKRTKVLSNIEEKNIISQDAELVEIASVSSCGSSQYCTAPECTSDIEN
SPCLENCNNTSENGSKHPTRYSPVLHKPLKRKQQKIKEKEKDENVITEAQQEDVGLKTKP
IPNKQLSEEKAVFCTKESSHKTSTKETNPNTQLSTEKAIFCPKKSPCITPATARNATSMS
CITKEVDPSKEVATNDYEWEDDLDLLKAFEEEETSTSESKVNTSFENELHYLRHKVVDVS
SSHEGGFLTKTITVENTKSKQQHQVILKHEWAESNLDSGDIINLVPNQESAEPCTVIDGK
TNLLVHHPDTLISGTTVSNSLGCLRRAVLSERFKNTEIATDPNNVSSVMLVGTIVHYIFQ
TAIKLKPPVAKEILLNVAKDAVYSRKYFADMLAMNTDPKAVLTQVENYLPQIESWIKDFR
VGKPCAGNTVNFQLPTSAAPNRFKPVRGSTLRYDANVALTEVKDIEENVWSPRYGLKGKI
DLTGNFKITDKKTRTTENTVLPLELKTGKDSHSMEHHVQVSIYTMFCNERRNKHGVPLIS
LPAGLLLYLKNLKTSCVPLKPVDSSGLMMLRNKVAHSITKTIMKSNANSFEEFSTQSFPP
TIDNDRTCRNCSQLRNCALVYKTVDESQGRYRPSSELFIMMSQLFSHLTDADLAYFRHWM
TCTFLEEQAANKKDKQKRFWLKTPQERFDEGKCITGLKLGGSSVPKPELADMFVQAFKRS
DNGKENMFKVGDLVLVNGNEPSHIAIATGTIHSINKSFISIITDRDFSGYDSDMIYSIDN
HIWLGAISTQSSLSNLSLLMSNETQCNKLRHLIIMHRDPFFAKNLDFIPRSSKNEIAQML
RGLNKTQRQAIKRVLISKDYTLVVGMPGSGKTTTIVAMIRILLLCGLRVLVTSYTHSAVD
NLLLKLIKYKTRFLRLGRPNQVHPNVLPYTEAVLSQNLKSPTELQKLYDEYRVVGCTCLS
VTSHIFFAIPGQNRPIFDVCIVDEASQIAQPACLAPLFHSERFVLVGDHLQLPPLVVSQE
AKKMGADESLFRRLTSHKPALCELTLQYRMNKEIMALSNHVTYEGRLECAHPTVAEATVK
LDNYDLVKSMLPDTDIEWLLRTIDPKTSVIFLDTSKREAYESEVEHGIQNMYEATIVTTI
AQWLIKAGCSPSKIGIIAPFRKQLRAIEEKMNSIEENTTLVEINTVDKYQGRDKSVILLS
FVRSKKEPLAEKKGELLNDWRRLNVGITRAKHKLVMVGCTRSLLEYEPCKKIIEYVQSNS
LLHFI
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaagacaaaatctggcaagttaagtcgaagtcaaggaaatattctttctttt
tgttcaactcgtactgcagaagatttgcttagaagcaaagatggtttaaaacaaggaaaa
attgatccttttatgaagagtaagaactccccaggtttttacctcaaatcgaaacggaaa
accgaaacatcatcaagtgaaatgtccagcagtcctgccaagaggacaaaagttctttca
aatatagaggagaaaaatatcatctctcaagatgcagaactggtggaaatagcttctgtt
agttcttgtgggtcgtctcaatattgtacagcaccagaatgcacaagtgacatagaaaat
tcaccatgtttggaaaactgcaacaatacttctgaaaatggttcaaaacatccaactaga
tacagtccagttctgcacaagcctttaaaaagaaaacaacagaaaataaaagaaaaagaa
aaggatgaaaatgtaattacagaagctcagcaagaagatgttggtttaaaaacaaaaccg
attccaaataaacagctatccgaagaaaaagctgttttttgcacaaaagaatcttcacac
aaaacctccactaaagaaacaaatccaaatacacaactatccacagaaaaggccattttt
tgtccaaaaaaatctccatgcattaccccagcaacagcgaggaatgcaacttcaatgagc
tgtataaccaaagaggtcgatccatctaaagaagttgccactaatgattatgaatgggag
gatgatcttgatttattgaaagcatttgaggaagaggaaacatctacaagtgaaagcaag
gttaacacaagttttgaaaatgaacttcattacttgaggcataaagttgtggatgtgtcg
tcttctcatgaaggggggtttctcacaaagacaattacagttgagaatacaaaaagtaaa
caacaacaccaagtgatacttaaacatgaatgggcagaaagcaaccttgattcaggtgat
attataaaccttgttcccaaccaagagtctgctgaaccatgtacagttattgatggtaaa
actaacttattggttcaccaccccgacacacttataagtggtacaaccgtgtcaaacagt
cttgggtgtctccgcagagctgttctatctgaacgttttaagaacactgaaattgctaca
gaccccaataatgttagttcagtcatgttggttgggacaattgtccattatatattccaa
actgctatcaagttaaaacctccagttgcaaaggaaatattgttaaatgttgcaaaggat
gccgtgtattctaggaaatactttgctgatatgcttgcaatgaacacagatcccaaagca
gtgttgacccaagtagaaaactaccttccccaaattgaatcttggattaaagatttcagg
gttggcaagccatgtgctggcaacactgtcaacttccagttaccgacttcagctgctcca
aaccggttcaaaccagttaggggatcaacattaagatatgatgcaaatgttgcactgaca
gaggtaaaagacatagaagagaatgtatggtcacccaggtatggacttaagggcaaaata
gatcttactggcaattttaaaatcactgacaagaaaactcgaaccactgaaaataccgtt
ttgccccttgaactaaaaacggggaaagatagtcattccatggaacatcatgtacaggtt
tcaatatacaccatgttttgcaacgaaagaagaaacaaacatggtgtcccactcatatca
ctaccagcaggacttcttctttatctgaaaaacctcaaaacaagttgtgttccacttaaa
ccagtggacagtagtggtttaatgatgctgagaaataaggttgctcactccatcacaaaa
accatcatgaaaagcaacgccaactcttttgaggaattttccactcaatctttcccacca
acaattgataatgaccgaacatgcaggaactgttcacaactacgtaactgtgcacttgta
tataaaaccgttgacgaatcacaagggagataccgaccctcatccgagttgttcattatg
atgagtcagcttttcagccacctcacggatgctgacttagcatattttcgccactggatg
acttgcacttttttggaggagcaagctgcaaataaaaaggataaacaaaaacgattttgg
ctaaaaactccacaagaaagatttgacgagggcaaatgcatcaccggtctaaaactaggg
ggatcctcggtacccaaaccagagctggctgacatgttcgttcaagcttttaaaagatca
gataacggaaaagaaaatatgttcaaagttggtgacttagtgttggtgaatggaaatgaa
ccaagtcatattgccattgctactgggaccattcattctatcaacaagtcatttatttcc
attattactgacagagatttttccggctacgattctgacatgatctacagtattgacaac
catatttggttgggagcaatatccacccaaagttcgttaagtaacttgtctctgctcatg
tcgaatgaaactcaatgcaacaaactgaggcacttgatcattatgcatagggatccattt
tttgccaaaaacttggattttattccccgttcttctaaaaatgagattgctcagatgctt
agggggttaaataaaacacagagacaagctattaagagggtgcttatatctaaggattat
acacttgttgttggtatgcctggcagtggtaaaacaaccactatcgttgctatgatcagg
atattgcttttatgtggtttacgagtactagtaacctcatacactcactctgctgttgat
aatcttttactcaaacttataaagtataagaccaggtttttacgtttgggtcggccaaac
caagttcaccccaatgtcctgccatacactgaagcggttttgtcacaaaacctaaaatca
cccacagaacttcagaaactatatgatgaatatcgtgtagtgggttgcacatgcttgtcc
gtcacctcacacatattttttgccatcccggggcaaaatcgaccaatttttgacgtttgt
atcgtggacgaagcatcccagattgcgcaacctgcctgcctagctcctctctttcactcg
gaacgtttcgttcttgttggagaccatctgcaacttccaccacttgtagtcagccaagag
gcaaagaaaatgggagctgatgagagtctgttcagaagactaacttcacacaaaccggct
ctgtgtgaacttacactgcaatatagaatgaacaaggagatcatggcattaagcaaccat
gtaacttacgagggaaggcttgagtgtgcgcatcctacagtggctgaagcgacagttaaa
ctcgataattatgacttggtaaaaagcatgttgcccgatactgacatcgagtggctgtta
cgtactattgatccgaagacgtcggtaatatttctagatacatctaagagagaggcatat
gaatcagaagttgaacacggtatacagaacatgtatgaagccaccattgtaactactata
gctcagtggctgattaaggcaggttgctcaccaagtaaaattggaattattgctccgttt
cgtaaacagctgcgggcaattgaggaaaaaatgaattcaattgaagaaaacacgacattg
gtggaaataaacacagtggataaataccaaggaagggacaaaagtgttatcctgctctca
tttgtaagaagcaaaaaagaaccacttgcagaaaagaaaggggagttgttgaatgactgg
aggcgtttgaatgttggtattactcgagccaagcacaagttggtaatggtcggctgtaca
cgcagtttattggagtacgagccgtgcaagaagataattgaatatgtgcaatccaacagc
ttactacattttatataa
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