Ciona intestinalis (yellow sea squirt): 100177236
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Entry
100177236 CDS
T01056
Name
(RefSeq) sorting nexin-13 isoform X2
KO
K17925
sorting nexin-13
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cin04990
]
100177236
Domain-containing proteins not elsewhere classified [BR:
cin04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
100177236
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PXA
Nexin_C
PX
RGS
Motif
Other DBs
NCBI-GeneID:
100177236
NCBI-ProteinID:
XP_002125747
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Position
3:complement(5531534..5546656)
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AA seq
979 aa
AA seq
DB search
MTETNSTVNSVNGIYWGAIILILGFLTFGLLGLLYAALYLLCFLAGVVAILYDHSQGNVK
QSVKAFAFARTPEALSLSQGIPKVLETDYSKRDFNIDRRLTSSSSIDERLHECLDYLLRD
YIKYWYNGLSDDPEFLHSFLVTLHDVIRALSSRFSSIDWQPYLTKNLVEDFASHVKCFRK
AQVEIQESQTSQQSTDSVESLSASQTNNNNKSDGSDNGSDKAVETILDCFFDFEIKFSKT
CRELVSFGVKKQSEYLQDVSEVLLYLLLPVDEFHCRPLKYMMRELLVHGVFLPMFKLYSD
PDYLNQYVNWLISDNCITSEWFLNVLRHSSEIGELHSIREKCDEEIARLRAKDTVGDDPA
IKQQLGSMRYVKNLCERQIRKKHDGNVYTDNIELDLEGYQTEKSKLYNLPLSVILRNNIA
LQIFIEYMQSVNGQAYLFFWLTVDGYRASAEQQLNEVKLQQLQGAIQRTPDMEMLRAIGH
NIYDQYLSKHAEPRVPLDQTTDRALKKKLDSGEPSPYVFDDIQQKVFGIMQKSESFFPAF
KASPYYMRLLAELDLLRETSLTSNDTNGSVGSSLDDISTSENEEVNKLTAVITQTGICKE
HGKTYAMFAVTVTRHWGNGRQESWDTFRRYREFYDLHLSLKENGSNLSTIRFPGRTFFKD
LKEDFLERRRTELNQYLSSVLSLEHCGKAMECLHTFLDAKAYQKNPRTFASKMDSMMRES
AQSVANFMSQAPDNLIGGIQRASDKVSGGIQKFSDKLPGSERKLSNEENHIEYNIENNIP
LRILLLLMDEVFDLKQRNQWLRRQMVAALQQVITTVFGDRMNRKIVDYVDNAVSAQQVSE
YIRTFQDSFWPGGILADVTPVRDDITVMRTRVLTKTKLHGVIPDEVRPLVGNETSRRGMA
RLFELLQHQELNTRFCYVLLEGVLCRVFPENRFQDLFTKFHSSSPKMRSHKRALMTRGVD
KWKQETRERKSRVLRRFES
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaccaactcaactgttaactctgtcaatggaatatactggggtgccattatt
ttaattctcggatttctaacatttggtttgcttggacttctctatgctgccctatatctg
ctttgtttcttagcaggagttgtagcaattctttacgaccacagccaaggaaatgtgaaa
caaagtgtcaaagcttttgcgtttgcaagaacaccagaagctttatctttatctcaaggc
attccaaaggtgttggaaacagactactcaaaacgggatttcaatatagatcgtcgttta
acatcatcaagcagcattgatgagagattacatgagtgcctcgactatttactccgtgac
tacatcaagtattggtacaacggattatccgatgatcccgagttcctccacagtttcctc
gttactcttcatgatgtcatcagagctctttcatccaggttcagcagcatagactggcaa
ccttacttaaccaagaacttggttgaagactttgcttcccatgttaaatgcttccgcaaa
gctcaagttgaaattcaagaatcccagacaagccagcagtctacagattctgtcgaaagt
ttatcagcatcacaaacaaacaataacaataaatctgatgggtcagacaatggatcagac
aaagcagtggaaacgattctggattgctttttcgatttcgaaatcaaattttccaaaact
tgtcgagaattagtgtcttttggtgtcaaaaaacaaagtgaatatttacaagatgtgagt
gaagtcttattatatctcttgcttcccgtcgatgaatttcattgtcgaccgctcaaatac
atgatgagggagcttttagtacatggagtatttcttccaatgtttaaactgtacagtgat
ccagactacctcaatcagtacgtcaattggctgataagcgacaattgcattacaagtgag
tggtttcttaacgttttacgacacagctccgagatcggtgaattacactcgatacgtgag
aaatgtgacgaagaaatcgctcgactgcgagccaaggacacggtcggagacgaccccgcc
attaaacaacagctcggtagcatgaggtatgtgaaaaatctatgcgagcgtcagataagg
aagaaacatgacggcaacgtttacactgataatatagaacttgatttggaaggttaccaa
actgagaagagcaaactatacaatcttccattgagtgtgatattgaggaacaacatcgct
ctacaaatttttattgaatacatgcagtcagtgaatgggcaagcatatctgttcttctgg
ttaacagtggatggatatcgtgcgtctgctgaacaacaacttaatgaagtgaagctgcaa
caactacaaggtgccatacaacgaacacctgacatggagatgcttcgtgccataggacac
aacatatatgaccaatacctcagcaaacatgcagaaccacgggtgccgctggatcaaaca
acagatagagccttgaagaagaagcttgactctggggagccatcgccttatgtgtttgat
gatattcaacaaaaggtgtttggcatcatgcagaaaagtgaatctttcttcccagcattt
aaagcaagtccttattacatgaggttgcttgctgaacttgatctgctgcgcgaaacaagt
ctaacatcaaatgacaccaatggttctgtgggttcgtcacttgatgatatatcaacatcg
gaaaatgaagaagtcaacaaactaactgctgttataacacaaacaggcatatgtaaggag
catgggaaaacatacgccatgttcgctgtcacagtaactcgtcactggggtaatggtagg
caggaatcatgggatactttccgcagataccgagagttttatgaccttcatttaagtctg
aaggaaaatggaagcaacttgagcaccatccgcttccccgggaggactttcttcaaagat
ctaaaggaggacttcttagagaggaggaggacagagttgaaccaatacctcagttctgtt
ctatcacttgaacattgtgggaaagccatggaatgtttacataccttcctggacgcaaag
gcttatcagaaaaatccaagaacttttgcaagcaaaatggactccatgatgcgagaatca
gcgcagagcgtcgccaacttcatgagccaagctccggataaccttataggtggaatacaa
agagcatccgataaagtgtccggaggaattcagaagttttccgataaacttcctggatca
gagaggaaacttagcaatgaggaaaaccacatcgaatataacatcgaaaacaacatcccg
ctgcgaatcctacttctccttatggatgaagtatttgacttgaagcaaagaaaccagtgg
ttacgtcgacagatggttgctgcattacaacaagtcataactactgtgttcggggatcga
atgaacagaaaaatcgtggattacgtggataatgcagtttcagctcagcaggtgagcgag
tacattcggactttccaagactcgttttggccaggtggaatacttgctgatgtcacacca
gttcgtgatgacatcacggtcatgagaactcgtgttctcacaaagaccaaacttcacggc
gtgataccagacgaagtacggccgctcgtcggtaacgagacaagtagacgaggtatggct
cgactgtttgaacttctccaacatcaagagctcaacacgaggttctgttacgttctatta
gaaggtgtgctgtgtcgtgtgttcccagaaaacagatttcaagatctcttcacgaagttt
cactcctcgtcacctaagatgcgctctcacaagagggcacttatgacacgcggagtcgac
aagtggaaacaagaaactcgtgagcgaaagtcgcgcgttctacgtcgtttcgaatcgtga
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