Ciona intestinalis (yellow sea squirt): 100177285
Help
Entry
100177285 CDS
T01056
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100177285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100177285
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100177285
Spliceosome [BR:
cin03041
]
Complex C
Other components
Step II factors
100177285
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
WHD_HA2
AAA_19
nSTAND3
nSTAND_NTPase5
SRP54
Flavi_DEAD
Sigma54_activ_2
T2SSE
AAA_14
TssR_VWA
AAA_23
AAA_16
Sigma54_activat
PhoH
ATPase
ABC_tran
ATPase_2
Motif
Other DBs
NCBI-GeneID:
100177285
NCBI-ProteinID:
XP_018666850
Ensembl:
ENSCING00000003597
LinkDB
All DBs
Position
3
Genome browser
AA seq
1167 aa
AA seq
DB search
MNVADEGSIHRLEGSAGDSVGGLIIKKKKTTGEAHVFTKPESKPSLLGLDKLAALKKDEE
KSKREASDEKDSKWRSKHGHNDRHYRPARFETPSYTGGVSSTYRDRKDKRDKDRVKRKEG
VYASSKDGVREKKDRRSERSTRSEWEDTPSHSKSSMYPDTPKVHGRGTPQTSSWEADDDA
GRRSSRSWESPSPSIHRGRETPGSRRDFREGTSRRSKRSNETPLPTPSYKYNKWNRENKT
PQWGKASDMNDEQKQQWEEEQLRADRDWYMMDEGFDERNNPFNSSSEEYVEKREQQIKQQ
RKERISAHRKQINEDNEKWETNRMMRSGVVLQTKFDDEDLNEFGGARVHLFVHNIVPPFL
DGRIVFTKQFEPVIPLKDNTCDMAVVARSGSLLVRKYREQKERKKSQRKDWELAGTKLGN
IMGIKKEDDKENPDMSEDSDFKSSQRFSQHMGKKSEASSDFAKSKTLTQQRQFLPIYAVK
EELLNIVRDNNIVVIIGETGSGKTTQLAQYLHEDGYSKYGMIGCTQPRRVAAMSVAKRVS
EEMGVSLGEDVGYAIRFEDVTSEKTIIKYMTDGILLRESLRESDLDCYSCIIMDEAHERS
LNTDVLFGLLREVVTRRRDLKLIVTSATMDAEKFCHFFGNVPSYTIPGRTFAVDVLFSKT
VVEDYVEAAVKQALQIHVQGRKGDILIFMPGQEDIEVTCDTLTGLKNLEDVAPLAVLPIY
SQLPSDLQAKIFQKAPDGIRKCVVATNIAETSLTVDGIAFVVDPGFCKLKVFNSRIGMDA
LSVFPVSQANANQRSGRAGRTEAGVAYRLYTLNQYKHEMLTASVPEIQRTNLANVVLLLK
SLGVQDLLKFHFMDPPPQDNILNSMYQLWILGALDNTGALTSCGRNMVEFPLDPPLSKMM
IVATEMECSAEILIIVSMLSVPAIFYRPTGREEESDAKREKFSVPESDHMTLLNVYQQWK
TNGYSSTWCNEHFIHAKAMRKVREVRSQLKEIADQQKMKIVSAGNDWDVIRKCICAAYFH
HAARLKGIGEYVNVRTGMPCHLHPTSSLFGMGFTPDYVVYHELVMTSKEYMQNVTAVEGE
WLAELGPMFYSVKESAKSRHEKRAAAKERMSQMEEELSIAHEQIKKRKKEQESEKKPGSE
MVRIATPGQSKLTTISTPRRTPGRFGL
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttgcggacgagggttccattcaccgcctagaaggctcggctggtgactctgta
ggcggacttattattaaaaagaaaaaaacgacaggcgaagcacatgtgtttacgaaacca
gaaagcaaaccgtcgctacttggattagataagctagcagcattgaagaaagacgaagaa
aagagtaaaagagaagcaagtgacgaaaaagactcaaaatggcgttcaaaacatggccac
aatgacagacattaccgacctgcgagatttgagacaccatcctacactggtggtgtcagt
tcaacatatagagatcgtaaagataaaagagataaggacagagtgaaacgaaaggagggg
gtttatgcttcttctaaagatggtgtgcgagagaagaaagatagaagaagtgaaagaagc
actcgaagtgaatgggaagacacgccaagtcactccaagtcaagcatgtatcctgataca
ccaaaagtacatggcagaggaactccacaaacctcttcatgggaggcagatgatgatgca
ggaagacgctcatcacgatcctgggagtcaccatcaccatccatacacagaggaagggag
actcctggatcaagaagagattttcgggaagggacgagcaggagatcaaaaagatcaaat
gaaaccccccttccaaccccttcatataaatacaataagtggaaccgtgagaataagaca
ccacagtggggtaaagcatcggacatgaatgatgaacagaagcaacaatgggaagaggaa
caactacgagctgatagggattggtatatgatggatgaaggattcgacgaacgaaataat
cctttcaattcttcctcggaggaatatgttgaaaaacgagaacaacaaatcaaacaacaa
cgcaaggagagaatctcggctcatagaaaacaaataaatgaagataatgagaaatgggag
acgaaccggatgatgcggagtggtgtcgtcctccagaccaagttcgatgatgaggacttg
aatgagtttggaggagcaagagtccatctcttcgtgcataatatcgttcctcctttcctg
gatggaagaatcgttttcacgaagcagtttgaaccagttattccattgaaagataacaca
tgcgacatggcagtggttgcaaggagcgggagtcttcttgttcgaaagtatcgtgaacag
aaggagaggaagaagtcacagaggaaggattgggagttggcgggaacaaaactcggcaac
atcatggggatcaagaaggaagatgataaagagaatcctgacatgagcgaagatagcgac
tttaaatcctcacaacgcttcagtcaacacatgggaaagaaatctgaagccagcagtgac
tttgcgaaaagtaaaactctcacccaacagcgacaattcctgcctatctatgctgtaaaa
gaagaacttctgaatatagttcgagacaacaacatagttgtgatcatcggtgaaacaggc
tcagggaaaactacacagttagctcagtatctacacgaagacggatattccaaatatggt
atgatcgggtgcacccaaccacgaagggtggctgctatgtcggtggcaaagcgggtgagc
gaggaaatgggggtttccctgggtgaggatgtggggtacgctatcaggtttgaagacgtt
actagtgagaaaacgatcattaaatacatgactgatggtattttactccgtgagtctctt
cgtgaatctgacctcgattgctatagctgtattatcatggacgaggctcacgagcgctcg
cttaacactgatgtcctgttcgggttgttacgtgaggttgtgacccggcgccgtgacctt
aaacttatcgtgacatctgccaccatggatgccgaaaaattttgccatttttttggaaac
gttccaagttatactataccaggtcgtacttttgctgttgacgttttattcagtaaaact
gtggttgaagattatgtggaagctgctgttaaacaagcccttcaaatccatgtacaagga
agaaaaggtgatattctaatcttcatgcctggacaagaagacattgaagttacatgcgat
acattaacaggattgaagaacttagaagatgttgctcctcttgctgtgctcccaatctac
tcccaacttccctctgacctccaagcgaagatctttcagaaagctcctgatgggattcgg
aaatgtgtggtggcaactaacattgctgaaacatcacttacagttgatggaatagctttc
gtggtggatcccggcttctgtaaattgaaggtgttcaactcccgcataggaatggatgct
ttatctgtgtttcctgtgtcacaagccaacgcaaaccaaagatcgggtcgtgctggcaga
acagaagcaggggttgcttatcgtctatatacactgaatcaatacaaacacgagatgtta
acagcatcagtgcccgagatacaacgcacaaacctcgcaaatgttgttctattgttgaaa
tcgcttggtgtgcaagacctgctcaagtttcatttcatggaccccccaccccaggacaac
atattgaactccatgtaccagttatggatactcggtgcccttgataacacgggtgccctt
acatcatgtgggaggaacatggtggaatttccactcgatccacccctgtctaagatgatg
attgtggcaactgagatggaatgtagtgctgagatactgataatagtatccatgctgtcg
gtacctgccatattctaccgaccaactggtagggaagaagagagcgacgcaaaaagagag
aaattcagcgtgcctgagagtgatcatatgacgttacttaacgtatatcagcaatggaaa
actaatggatactcatccacatggtgcaacgaacacttcatccatgcaaaagcaatgaga
aaagttcgagaagttcgatctcaacttaaagagatcgctgaccaacagaagatgaagatt
gtatcggcaggcaatgattgggatgtaataaggaaatgtatttgtgcagcttatttccac
cacgctgcaaggctgaagggcattggggaatatgtgaacgtccgtacgggcatgccttgc
cacctgcacccaacgtcatctctgtttggaatgggatttacaccagattatgttgtctac
catgagctggtgatgacgtctaaggaatacatgcagaatgttacagctgtagaaggagaa
tggctggctgaacttggtcccatgttttacagcgtgaaggaatcggctaaatcaagacat
gagaagagagcagccgccaaagagcgaatgtcacaaatggaggaggagctttcaattgct
catgaacaaataaagaagagaaagaaggagcaagaaagtgagaagaaaccaggatccgag
atggttcgaatcgccactcctggacaatccaaactaactaccatttccactccaagacga
acacccggcagattcggtttatga
DBGET
integrated database retrieval system
