KEGG   Ciona intestinalis (yellow sea squirt): 100177335
Entry
100177335         CDS       T01056                                 
Name
(RefSeq) U2 snRNP-associated SURP motif-containing protein-like
  KO
K12842  U2-associated protein SR140
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100177335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cin03041]
    100177335
Spliceosome [BR:cin03041]
 Complex A
  U2 snRNP components
   U2 related factors
    100177335
 Complex B
    100177335
SSDB
Motif
Pfam: Surp RRM_1 CID cwf21 CTK3 RRM_7 RRM_5
Other DBs
NCBI-GeneID: 100177335
NCBI-ProteinID: XP_026690282
LinkDB
Position
5:complement(1224719..1236930)
AA seq 922 aa
MKAISDSKLKAFSIGRMNVTKNVLNKREKEEIKKKEEDKKTQEVYKEFVASFEGSKSNMK
TFVRGDVINPDKSMDTTKGKLYKPKSRLHEPDTHKPNVVSSPITPKSAVKPDRPTLKKKE
YKKKSNLELFKEELMVMQKEREQRHSVKKSMQRGPMVDSFNKPRQSRFQPLDDKIVANIA
DPSVLDDLVASSHENGDPMTTNLFLGNVNPKLDEQQLCELFGKYGPLASVKVMWPRTEDE
RARERNCAFVAFMTRKDADRALRHLQGRDICDYEMKLGWGKSVPIPPHPVYVPPALLDRT
LPPAPSGLPFNAQPLDPMKKPPAPGVPPEFVDQQDFENTLKNSVVRVVVPTERNLLALIH
RMIEFVVREGPMFEAMIMNREINNPMFRFLFNNKSPAHIYYRWRTYSVLHGESPTNYRTA
KFRIFRGGSLWQPPPLNPYSTGLEETDSEDEFPMHKSAKASEQDVTSADTDKVKGELKED
ERDKLEDILRSLLPRQKLIGDAMVFCLQHAECAEEIVECLAESLSILETPLTKKIARLYL
ISDILHNSSAKVANASFFRKQLESKLEQVMTDLHLCHVAISSRLRAEQFKQKILSCFRAW
DDWAIYPDKLLIHLQNTFLGLVGGTSQKQVEPKPLVSKDEGLPLISDEADDEDVDGVPMD
NVDVDGMPLDGEPLDGVPLENKKVAEEPQARFVQSKWEMVDPVEVEAQAMTTSKWDQLEN
QNYDGEPLEESHSQSENLAQEFKYDESKRAKLREIEVKVMKFQDELESGQRERKSGVSIS
KQVSQYREKLLDKVSEREEKMRHRDSDRKKDKRRGQSSSDDSDDSEHSKKKRRKKNKESS
DTPSHHGSGLVSYDSDGSSDSLRKYSLSAKKKKYSGRTRSRSREKYSRKVSTPDRRRSKS
PHRSKRSRSRSRERKKKRKSKH
NT seq 2769 nt   +upstreamnt  +downstreamnt
atgaaggcaatatcagacagcaagctgaaagcttttagcattggtcgcatgaatgtgacg
aaaaatgtgctcaataaaagggaaaaggaagaaattaagaagaaagaagaagacaagaag
acacaagaggtttataaagagtttgttgcttcatttgaaggcagcaagtcaaacatgaaa
acatttgtacgaggagatgttattaatcctgataaatctatggacactacgaaaggcaag
ctgtacaagccaaagtctcgcttacatgaaccagacacacacaaaccaaatgtcgtttct
tcacccatcaccccgaaatctgctgtgaaacctgaccgaccaacactaaagaaaaaggag
tacaaaaagaagagcaatttagaactattcaaagaggaattaatggtgatgcagaaagaa
agagagcaacgccacagtgtcaagaaatccatgcaaagaggtcctatggtagatagtttt
aataaaccaaggcaatccaggtttcaaccattagatgacaagatagtggccaacatagct
gatccatcagtgttggatgatcttgtggcaagctcccatgaaaatggtgatccaatgaca
accaacctgttcttgggaaatgtcaatccaaaattggatgaacaacaactttgtgaactg
tttggaaaatatgggccattagctagtgtaaaggtaatgtggcctcgtactgaagatgaa
agagcgagggaacgaaattgtgcgtttgttgctttcatgacgagaaaagatgcagaccgc
gcactgaggcatttacaaggaagagatatatgcgattatgagatgaaactaggttggggt
aaatctgtccctatccccccacacccagtgtatgtacccccagctcttcttgatcgtact
ctacccccggcaccatctggtcttccattcaacgctcaaccccttgatcccatgaagaaa
cccccagcaccgggtgtccctccagagtttgtcgaccagcaagactttgaaaataccttg
aaaaattccgttgtgcgtgtggtagtacctacggaaaggaacttgttggcattgattcat
agaatgatagagtttgttgtacgcgagggcccaatgtttgaagccatgataatgaacagg
gaaattaataacccaatgtttcgctttctcttcaataataaaagtcctgcacatatatat
tatcgctggagaacttactcagtgctacatggggagagtcccacaaattatcgcacggca
aaatttcgtatatttcgtggtggatcgttgtggcagccacctcctttaaacccatattca
actggcttggaggaaacagactcagaagatgaatttccgatgcacaagtcggctaaagca
tcggaacaagatgttacaagtgcagatacagataaagtaaagggagagttaaaggaagat
gaaagagacaaacttgaagacattttgcgaagccttttacctcggcaaaagttgatcggt
gacgcgatggtgttctgtctccaacatgctgagtgcgcagaagaaatcgttgaatgtttg
gctgaaagtttatcaatccttgaaaccccacttacaaagaaaattgcacggctgtacttg
atatcagatatcttgcacaactcatctgcaaaagttgcaaacgcttcgttttttagaaaa
cagttggaatcaaaactggaacaagtaatgactgacttacatttgtgtcacgttgccatc
agtagtcgtctacgagccgagcaatttaaacagaaaattctttcgtgctttagagcatgg
gatgactgggcaatatacccggataaattgcttattcatttacaaaacactttccttggc
ttagtgggcggaacaagccagaaacaggttgaaccaaaaccgttggtatctaaagatgaa
ggtcttccattaataagtgatgaagcagatgatgaggatgtagatggtgttcctatggat
aatgtggatgttgatgggatgcctcttgatggggagccactggatggggtgccattggaa
aataaaaaggtggcagaagagccacaggctcggtttgttcaatctaaatgggagatggtg
gatcctgttgaggtagaagctcaagctatgacaacttccaagtgggatcaacttgaaaac
cagaactatgatggagaaccacttgaagaatcccattcacagagtgaaaacttagctcaa
gaatttaaatatgacgaatcaaaaagagcaaaacttcgggaaattgaggtgaaagtgatg
aaatttcaagatgaattagaatctggacaaagagaacgaaaatcgggtgtttcaatttct
aaacaagtttctcaatacagagagaagttattggataaagtaagtgaacgggaagaaaaa
atgcgacatagagattccgatagaaagaaagacaaacgaaggggacaaagtagtagtgat
gattcggatgactctgaacattcaaagaaaaaacgaagaaagaaaaataaagaaagttcg
gacactccctcccaccatggatcagggttagtttcgtatgatagcgatggatcgagtgat
tctttgagaaaatattcactttcggcaaaaaagaagaaatattctggaaggaccaggtct
cgctcgagagaaaaatatagtcgcaaagtttccactcctgatcgtagacgatcgaaaagt
cctcatcgttcaaagagatccaggtcgagatccagggagaggaagaagaagagaaagagc
aagcattga

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