Ciona intestinalis (yellow sea squirt): 100177341
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Entry
100177341 CDS
T01056
Name
(RefSeq) ribosome biogenesis protein bop1-A-like
KO
K14824
ribosome biogenesis protein ERB1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100177341
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
100177341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BOP1NT
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
ANAPC4_WD40
Beta-prop_Vps41
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
DUF7099
WDR90_beta-prop_4th
Vps16_N
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
B-prop_COPA_B_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_IP5PC_F
Beta-prop_WDR35_TULP_N
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_IFT140_2nd
Motif
Other DBs
NCBI-GeneID:
100177341
NCBI-ProteinID:
XP_002129775
Ensembl:
ENSCING00000006069
LinkDB
All DBs
Position
6:complement(1059172..1066996)
Genome browser
AA seq
760 aa
AA seq
DB search
MKKKRPLSELQTSILGENEENLFTNKPIEEEESENEEENEENVAEESESDYSGLGEDEDS
DSDDSMLGEEDSDVEEGEEVNEKSTEPTQHTEEKKETSEVVAKINEKLEKQTEDNDNDTS
DEEDSRNTVGNIPMQWYEDFPHIGYDLDGKKIAKPIRNNDELDKFLDKMDNPEYWKTIHD
KTTGRDHVLTEEELSLVNRVQRGYFYDAKYDPHEPYVDFFTNEKMLHPINNAPAHKRSFT
PSLVEKRKVGKLVHAIKMGWLKVGKPKQDDEEQIKFYDLWADVNDDKKSHSELARQKMHI
PAPKPALPGHEASYNPPPEYLPTQEEIDQWKEDDPEDRKFDFIPEKHDALRRVPQYPKFI
QERFARCLDLYLCPRQRKMKFNVNPDDLIPDLPKPRDLRPFPTVQALCYRGHQAMVRTIS
VDTTGQWLASGSDDGVVRIWEVQTARCVRELKIDEKEAIKCISWCPNTSVCLLAITVDTK
IIILNPYIGDRLVAQATDSLLQSYEPNEEEEEQSGSKSEKSNSLIPPWRSVETGLEYQDG
YRLVITHPKAVSKVTWHAKGDYFAATVPNNSNAQVFLHQLTKRRSQNPFSKCKGAVQSVL
FHPNRPFFFVATQQYVRVYNLVKQQLSKKLLSNAKWISSIAIHPGGDNLIVGSYDCRLSW
FDMDLSSKPYRTMRYHKRAIRACCFHRKYPLFASAGDDGSIVVSHGMVYSDLMQNPLIVP
VKVLKGHKVDRNLGVLDCCFHPHQPWIFSSAADNTIRLFS
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaagagaccactgagtgaattacagacctctatactgggagagaatgaggaa
aacttattcacaaataagcccatagaagaagaagagtcagagaatgaagaagagaacgaa
gaaaatgtggcagaagagagcgagagcgattattctggacttggtgaggatgaggactct
gattcagatgactctatgttgggtgaagaggatagtgatgtagaagaaggggaagaagtg
aatgagaaatcaacagagccaacacaacacacagaagaaaaaaaggaaacaagcgaagtt
gtggcaaaaataaatgaaaaacttgagaaacaaactgaagataatgataatgacacttca
gatgaggaggacagcagaaacacagttggtaacatacccatgcaatggtatgaagacttt
cctcatattggttatgacttggatgggaaaaagatcgcaaaaccaattcgaaataacgat
gaattggataaatttctcgataaaatggacaacccagaatactggaaaacgatccatgat
aaaacaacagggagagaccatgttttaactgaagaggaattgagtttggttaacagagta
caacgaggttatttctacgatgctaaatatgaccctcatgaaccatacgttgactttttc
accaatgaaaaaatgttacacccaataaataacgcccctgctcataaaagaagtttcacc
ccttctctggtggaaaaacgaaaagttggcaagcttgtccatgctattaaaatgggttgg
ctaaaagttggcaagcctaagcaagatgatgaagaacaaatcaagttctatgatttatgg
gcagatgtgaatgatgataaaaagagccatagtgaacttgcgagacagaaaatgcacatt
cctgcacctaaaccagcactgccagggcatgaagcatcttataacccacccccagagtat
ttgccaactcaagaagagattgaccaatggaaagaagacgacccagaagaccggaagttt
gatttcatccccgagaagcacgatgcattgagaagagttcctcaatatcccaagttcatc
caggagagattcgcccgatgcctcgatctttatctgtgtcctcgtcagaggaaaatgaag
tttaacgtgaaccctgatgaccttatccctgacctccctaaaccccgtgaccttcgacct
ttccccaccgtacaagctctgtgttacaggggtcatcaagccatggtccgtactatatcg
gtggatactacaggacaatggttggcatcaggttctgacgatggtgtagttagaatatgg
gaagtacaaacagctcgttgtgtgcgtgaacttaaaatagatgaaaaggaagcaatcaaa
tgtatatcatggtgtcctaataccagtgtgtgtcttctagctatcacagttgacacgaaa
attataattttgaacccctacattggagatcgactggttgcccaggcaaccgacagcctc
ctccaatcatatgagccaaatgaggaggaagaggagcagagtgggagcaagagtgagaag
agcaattccctcattcctccctggagatctgtagaaacaggattagaatatcaagatggg
tacaggcttgttataacacatccaaaagcagtatccaaggttacatggcatgccaagggc
gattactttgcagccaccgtgcccaacaattccaatgcgcaagtattcttgcaccaactc
actaaaagaaggtctcagaatcccttcagtaaatgcaagggagcagtacagagcgtgctg
tttcatccgaaccgacctttcttctttgtggcaacgcagcaatacgtacgtgtctacaac
ttagtaaaacagcagctttcgaaaaaactcttgtcaaacgcaaaatggatttcatcaatt
gccattcatccaggaggtgataacttgatcgttgggagttacgactgccgtctttcatgg
tttgacatggacctatcttccaagccataccgcacaatgcgttatcataaacgcgctata
cgtgcgtgttgcttccatcgaaaatatccactttttgcttcagctggtgatgatgggtca
attgtagttagccatgggatggtatacagtgatttaatgcaaaatccgctaatcgtgccg
gttaaagtactgaaaggtcacaaagtagatcgtaaccttggagtcctggattgttgtttc
catcctcaccaaccatggatcttctcatccgcagcagataatacgattcgtcttttctct
tga
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